| 65 |
0.0006555 |
0.04603 |
pa0184 |
N/A |
-11.46 |
0.086208 |
64 -- 73 |
101 -- 110 |
ABC transporter ATP-binding protein |
pa2294 |
_____________63_________74\n_____________|__________|\n5'-AUC...UCGGC__________UCGGC...UCC-3'\n______________AGCCUGAUGA\n______________||||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
67 -- 73 |
101 -- 107 |
-16.8516 kcal/mol |
3.27707 kcal/mol |
2.11196 kcal/mol |
63 74@LB@ | |@LB@5'-AUC...UCGGC UCGGC...UCC-3'@LB@ AGCCUGAUGA@LB@ ||||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -11.46 kcal/mol@LB@Hybridization Energy -16.8516 kcal/mol@LB@Unfolding Energy - mRNA 3.27707 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 64 -- 73@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 88 |
0.001191 |
0.06151 |
pa1669 |
N/A |
-13.12 |
0.033789 |
66 -- 116 |
61 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
pa0077 |
_____________65___________________________________________________________117\n_____________|____________________________________________________________|\n5'-AGG...UGUUC___C____CU_________U__U___U__GG____________C__C_____________GAACA...UCG-3'\n______________ACC_UGGU__GCCUGGUGG_GA_GUA_UC__________GAUU_GC_UGGG_UUCUCGGC\n______________|||_||:|__|||||:||:_||_:||_||__________||:|_||_||||_:||||:||\n______________UGG_ACUA__CGGACUACU_CU_UAU_AG__________CUGA_CG_ACCC_GAGAGUCG\n3'-UUU...GUUUU___C____AU_________C__C___U__ACUUCUCAGG_______C____A________AAUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________120__________________________________________________________60\n |
78 -- 84 |
101 -- 107 |
-47.9471 kcal/mol |
19.2589 kcal/mol |
15.5734 kcal/mol |
65 117@LB@ | |@LB@5'-AGG...UGUUC C CU U U U GG C C GAACA...UCG-3'@LB@ ACC UGGU GCCUGGUGG GA GUA UC GAUU GC UGGG UUCUCGGC@LB@ ||| ||:| |||||:||: || :|| || ||:| || |||| :||||:||@LB@ UGG ACUA CGGACUACU CU UAU AG CUGA CG ACCC GAGAGUCG@LB@3'-UUU...GUUUU C AU C C U ACUUCUCAGG C A AAUGG...GUU-5'@LB@ | |@LB@ 120 60@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -47.9471 kcal/mol@LB@Unfolding Energy - mRNA 19.2589 kcal/mol@LB@Unfolding Energy - sRNA 15.5734 kcal/mol@LB@@LB@Position - mRNA 66 -- 116@LB@Position - sRNA 61 -- 119@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 89 |
0.001191 |
0.06151 |
pa1669 |
N/A |
-13.12 |
0.033789 |
66 -- 116 |
61 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
pa0077 |
_____________65___________________________________________________________117\n_____________|____________________________________________________________|\n5'-AGG...UGUUC___C____CU_________U__U___U__GG____________C__C_____________GAACA...UCG-3'\n______________ACC_UGGU__GCCUGGUGG_GA_GUA_UC__________GAUU_GC_UGGG_UUCUCGGC\n______________|||_||:|__|||||:||:_||_:||_||__________||:|_||_||||_:||||:||\n______________UGG_ACUA__CGGACUACU_CU_UAU_AG__________CUGA_CG_ACCC_GAGAGUCG\n3'-UUU...GUUUU___C____AU_________C__C___U__ACUUCUCAGG_______C____A________AAUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________120__________________________________________________________60\n |
78 -- 84 |
101 -- 107 |
-47.9471 kcal/mol |
19.2589 kcal/mol |
15.5734 kcal/mol |
65 117@LB@ | |@LB@5'-AGG...UGUUC C CU U U U GG C C GAACA...UCG-3'@LB@ ACC UGGU GCCUGGUGG GA GUA UC GAUU GC UGGG UUCUCGGC@LB@ ||| ||:| |||||:||: || :|| || ||:| || |||| :||||:||@LB@ UGG ACUA CGGACUACU CU UAU AG CUGA CG ACCC GAGAGUCG@LB@3'-UUU...GUUUU C AU C C U ACUUCUCAGG C A AAUGG...GUU-5'@LB@ | |@LB@ 120 60@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -47.9471 kcal/mol@LB@Unfolding Energy - mRNA 19.2589 kcal/mol@LB@Unfolding Energy - sRNA 15.5734 kcal/mol@LB@@LB@Position - mRNA 66 -- 116@LB@Position - sRNA 61 -- 119@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 98 |
0.001381 |
0.06477 |
pa5040 |
pilQ |
-10.76 |
0.123916 |
69 -- 120 |
75 -- 117 |
type 4 fimbrial biogenesis outer membrane protein PilQ |
|
_____________68_____________________________________________________121\n_____________|______________________________________________________|\n5'-GUG...AUAGA______CGAAAUCGUU_____CGGA_______ACUGG______C__________AGCCU...CAC-3'\n______________CGUGAU__________CCUGA____GAGGGGA_____CUGGAG_GUCCG_C_GC\n______________||||||__________|||||____||||:||_____|||:||_|||||_|_||\n______________GCACUA__________GGACU____CUCCUCU_____GACUUC_CAGGC_G_CG\n3'-UUU...UUUUG______AUC____________A__________AUUA_______U_____U_A__CACCC...GUU-5'\n_____________|______________________________________________________|\n_____________118____________________________________________________74\n |
94 -- 100 |
96 -- 102 |
-39.923 kcal/mol |
16.9987 kcal/mol |
12.1721 kcal/mol |
68 121@LB@ | |@LB@5'-GUG...AUAGA CGAAAUCGUU CGGA ACUGG C AGCCU...CAC-3'@LB@ CGUGAU CCUGA GAGGGGA CUGGAG GUCCG C GC@LB@ |||||| ||||| ||||:|| |||:|| ||||| | ||@LB@ GCACUA GGACU CUCCUCU GACUUC CAGGC G CG@LB@3'-UUU...UUUUG AUC A AUUA U U A CACCC...GUU-5'@LB@ | |@LB@ 118 74@LB@@LB@@LB@Energy -10.76 kcal/mol@LB@Hybridization Energy -39.923 kcal/mol@LB@Unfolding Energy - mRNA 16.9987 kcal/mol@LB@Unfolding Energy - sRNA 12.1721 kcal/mol@LB@@LB@Position - mRNA 69 -- 120@LB@Position - sRNA 75 -- 117@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 96 -- 102@LB@ |
| 142 |
0.003054 |
0.09883 |
pa4939 |
N/A |
-10.79 |
0.122172 |
84 -- 99 |
39 -- 58 |
ATP phosphoribosyltransferase |
|
_____________83___________________100\n_____________|____________________|\n5'-CGC...CAUCG____________________UCACC...AUC-3'\n______________GCCGGCUGA____GCGACCG\n______________:||||||||____||||||:\n______________UGGCCGACU____CGCUGGU\n3'-UUU...UCGAA_________AGAG_______CAACU...GUU-5'\n_____________|____________________|\n_____________59___________________38\n |
93 -- 99 |
39 -- 45 |
-28.5021 kcal/mol |
6.65531 kcal/mol |
11.0618 kcal/mol |
83 100@LB@ | |@LB@5'-CGC...CAUCG UCACC...AUC-3'@LB@ GCCGGCUGA GCGACCG@LB@ :|||||||| ||||||:@LB@ UGGCCGACU CGCUGGU@LB@3'-UUU...UCGAA AGAG CAACU...GUU-5'@LB@ | |@LB@ 59 38@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -28.5021 kcal/mol@LB@Unfolding Energy - mRNA 6.65531 kcal/mol@LB@Unfolding Energy - sRNA 11.0618 kcal/mol@LB@@LB@Position - mRNA 84 -- 99@LB@Position - sRNA 39 -- 58@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 166 |
0.004233 |
0.117 |
pa2585 |
uvrC |
-12.59 |
0.046141 |
89 -- 105 |
106 -- 123 |
excinuclease ABC subunit C |
|
_____________88_________________106\n_____________|__________________|\n5'-CGC...UCGCC___________A______AUCGC...UGG-3'\n______________GAAGACCGUGA_UA_CCU\n______________:||:|||||||_||_|||\n______________UUUUUGGCACU_AU_GGA\n3'-UUU...CCCAG___________A__C___CUACU...GUU-5'\n_____________|__________________|\n_____________124________________105\n |
93 -- 99 |
113 -- 119 |
-17.5883 kcal/mol |
2.75927 kcal/mol |
2.24138 kcal/mol |
88 106@LB@ | |@LB@5'-CGC...UCGCC A AUCGC...UGG-3'@LB@ GAAGACCGUGA UA CCU@LB@ :||:||||||| || |||@LB@ UUUUUGGCACU AU GGA@LB@3'-UUU...CCCAG A C CUACU...GUU-5'@LB@ | |@LB@ 124 105@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -17.5883 kcal/mol@LB@Unfolding Energy - mRNA 2.75927 kcal/mol@LB@Unfolding Energy - sRNA 2.24138 kcal/mol@LB@@LB@Position - mRNA 89 -- 105@LB@Position - sRNA 106 -- 123@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 47 |
0.0003012 |
0.02946 |
pa1776 |
sigX |
-11.73 |
0.074706 |
90 -- 102 |
103 -- 115 |
RNA polymerase sigma factor SigX |
|
_____________89____________103\n_____________|_____________|\n5'-CGU...CGAUA___C_________CUCAC...UGU-3'\n______________UGA_UGGCCUGAU\n______________|||_|:|||||||\n______________ACU_AUCGGACUA\n3'-UUU...UUGGC___A_________CUCCU...GUU-5'\n_____________|_____________|\n_____________116___________102\n |
96 -- 102 |
103 -- 109 |
-16.1519 kcal/mol |
2.30076 kcal/mol |
2.12156 kcal/mol |
89 103@LB@ | |@LB@5'-CGU...CGAUA C CUCAC...UGU-3'@LB@ UGA UGGCCUGAU@LB@ ||| |:|||||||@LB@ ACU AUCGGACUA@LB@3'-UUU...UUGGC A CUCCU...GUU-5'@LB@ | |@LB@ 116 102@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -16.1519 kcal/mol@LB@Unfolding Energy - mRNA 2.30076 kcal/mol@LB@Unfolding Energy - sRNA 2.12156 kcal/mol@LB@@LB@Position - mRNA 90 -- 102@LB@Position - sRNA 103 -- 115@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 103 -- 109@LB@ |
| 73 |
0.0008061 |
0.04991 |
pa0112 |
N/A |
-16.64 |
0.003170 |
93 -- 149 |
38 -- 90 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________92__________________________________________________________150\n_____________|___________________________________________________________|\n5'-CGG...GCUGC______AC__G_A________CUCAAG________A____________GG_________CGCGG...CCC-3'\n______________UGAAGG__GU_C_ACUGC_UG______CUCUC_GC_UAUCGGUUGAUC__CGUGGCCGG\n______________|||||:__||_|_|||||_||______|||||_||_||:|||:|||||__||:|:||:|\n______________ACUUCU__CA_G_UGACG_AC______GAGAG_CG_AUGGCCGACUAG__GCGCUGGUC\n3'-UUU...AUUAG__________G_C_____C__CCA________U__A____________A__________AACUC...GUU-5'\n_____________|___________________________________________________________|\n_____________91__________________________________________________________37\n |
141 -- 147 |
40 -- 46 |
-57.3106 kcal/mol |
21.635 kcal/mol |
19.0336 kcal/mol |
92 150@LB@ | |@LB@5'-CGG...GCUGC AC G A CUCAAG A GG CGCGG...CCC-3'@LB@ UGAAGG GU C ACUGC UG CUCUC GC UAUCGGUUGAUC CGUGGCCGG@LB@ |||||: || | ||||| || ||||| || ||:|||:||||| ||:|:||:|@LB@ ACUUCU CA G UGACG AC GAGAG CG AUGGCCGACUAG GCGCUGGUC@LB@3'-UUU...AUUAG G C C CCA U A A AACUC...GUU-5'@LB@ | |@LB@ 91 37@LB@@LB@@LB@Energy -16.64 kcal/mol@LB@Hybridization Energy -57.3106 kcal/mol@LB@Unfolding Energy - mRNA 21.635 kcal/mol@LB@Unfolding Energy - sRNA 19.0336 kcal/mol@LB@@LB@Position - mRNA 93 -- 149@LB@Position - sRNA 38 -- 90@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 81 |
0.0009408 |
0.05338 |
pa2962 |
tmk |
-12.93 |
0.037833 |
94 -- 116 |
34 -- 55 |
thymidylate kinase |
|
_____________93________________________117\n_____________|_________________________|\n5'-CGC...AACAA______________GUA________AGCGU...AGG-3'\n______________GGC_GGUC_CGCGA___CCAGUUGA\n______________|||_|:||_|||||___||||||||\n______________CCG_CUAG_GCGCU___GGUCAACU\n3'-UUU...AAUGG___A____A________________CACUG...GUU-5'\n_____________|_________________________|\n_____________56________________________33\n |
110 -- 116 |
34 -- 40 |
-28.5201 kcal/mol |
7.46572 kcal/mol |
8.1291 kcal/mol |
93 117@LB@ | |@LB@5'-CGC...AACAA GUA AGCGU...AGG-3'@LB@ GGC GGUC CGCGA CCAGUUGA@LB@ ||| |:|| ||||| ||||||||@LB@ CCG CUAG GCGCU GGUCAACU@LB@3'-UUU...AAUGG A A CACUG...GUU-5'@LB@ | |@LB@ 56 33@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -28.5201 kcal/mol@LB@Unfolding Energy - mRNA 7.46572 kcal/mol@LB@Unfolding Energy - sRNA 8.1291 kcal/mol@LB@@LB@Position - mRNA 94 -- 116@LB@Position - sRNA 34 -- 55@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 156 |
0.00379 |
0.1117 |
pa3495 |
nth |
-14.09 |
0.018638 |
94 -- 117 |
105 -- 123 |
endonuclease III |
|
_____________93_______________________118\n_____________|________________________|\n5'-UGG...CCCUG_________AUC___GAA______GCGGA...UCA-3'\n______________AAGAACCGU___GAU___AGCCUG\n______________||:||||||___|||___||||||\n______________UUUUUGGCA___CUA___UCGGAC\n3'-UUU...CCCAG_______________A________UACUC...GUU-5'\n_____________|________________________|\n_____________124______________________104\n |
96 -- 102 |
115 -- 121 |
-18.312 kcal/mol |
1.98459 kcal/mol |
2.24275 kcal/mol |
93 118@LB@ | |@LB@5'-UGG...CCCUG AUC GAA GCGGA...UCA-3'@LB@ AAGAACCGU GAU AGCCUG@LB@ ||:|||||| ||| ||||||@LB@ UUUUUGGCA CUA UCGGAC@LB@3'-UUU...CCCAG A UACUC...GUU-5'@LB@ | |@LB@ 124 104@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -18.312 kcal/mol@LB@Unfolding Energy - mRNA 1.98459 kcal/mol@LB@Unfolding Energy - sRNA 2.24275 kcal/mol@LB@@LB@Position - mRNA 94 -- 117@LB@Position - sRNA 105 -- 123@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 115 -- 121@LB@ |
