133 |
0.002661 |
0.0912 |
pa2511 |
N/A |
-14.22 |
0.017134 |
181 -- 210 |
98 -- 119 |
transcriptional regulator |
|
_____________180____________________________211\n_____________|______________________________|\n5'-CGG...GCCUU______UCGAGU___GAACCA_________CCCAU...CGC-3'\n______________GCCGUG______GCC______UGAUGAGGA\n______________:|||||______|||______|||||||||\n______________UGGCAC______CGG______ACUACUCCU\n3'-UUU...GUUUU______UAAU____________________CUAUU...GUU-5'\n_____________|______________________________|\n_____________120____________________________97\n |
204 -- 210 |
98 -- 104 |
-24.6889 kcal/mol |
8.22136 kcal/mol |
2.25153 kcal/mol |
180 211@LB@ | |@LB@5'-CGG...GCCUU UCGAGU GAACCA CCCAU...CGC-3'@LB@ GCCGUG GCC UGAUGAGGA@LB@ :||||| ||| |||||||||@LB@ UGGCAC CGG ACUACUCCU@LB@3'-UUU...GUUUU UAAU CUAUU...GUU-5'@LB@ | |@LB@ 120 97@LB@@LB@@LB@Energy -14.22 kcal/mol@LB@Hybridization Energy -24.6889 kcal/mol@LB@Unfolding Energy - mRNA 8.22136 kcal/mol@LB@Unfolding Energy - sRNA 2.25153 kcal/mol@LB@@LB@Position - mRNA 181 -- 210@LB@Position - sRNA 98 -- 119@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 98 -- 104@LB@ |
154 |
0.003595 |
0.1073 |
pa3974 |
ladS |
-15.87 |
0.005612 |
181 -- 233 |
43 -- 89 |
lost adherence sensor LadS |
|
_____________180_________________________________________________________234\n_____________|___________________________________________________________|\n5'-CUU...CGUUC____________________CA__AUG_______________UUCUCUUUCU_______UUGCC...CCA-3'\n______________GAGGAG_C__ACUGCG_GGG__UC___CGGC__ACUGGCUGA__________UCUUGCG\n______________||:|||_|__||||||_|||__||___|:||__||:||||||__________|||:|||\n______________CUUCUC_G__UGACGC_CCC__AG___GUCG__UGGCCGACU__________AGAGCGC\n3'-UUU...UUAGA______A_GC______A___AG__A______AA__________________________UGGUC...GUU-5'\n_____________|___________________________________________________________|\n_____________90__________________________________________________________42\n |
227 -- 233 |
43 -- 49 |
-49.9041 kcal/mol |
15.1092 kcal/mol |
18.9299 kcal/mol |
180 234@LB@ | |@LB@5'-CUU...CGUUC CA AUG UUCUCUUUCU UUGCC...CCA-3'@LB@ GAGGAG C ACUGCG GGG UC CGGC ACUGGCUGA UCUUGCG@LB@ ||:||| | |||||| ||| || |:|| ||:|||||| |||:|||@LB@ CUUCUC G UGACGC CCC AG GUCG UGGCCGACU AGAGCGC@LB@3'-UUU...UUAGA A GC A AG A AA UGGUC...GUU-5'@LB@ | |@LB@ 90 42@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -49.9041 kcal/mol@LB@Unfolding Energy - mRNA 15.1092 kcal/mol@LB@Unfolding Energy - sRNA 18.9299 kcal/mol@LB@@LB@Position - mRNA 181 -- 233@LB@Position - sRNA 43 -- 89@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 43 -- 49@LB@ |
3 |
1.464e-07 |
0.0002243 |
pa3814 |
iscS |
-11.38 |
0.090161 |
182 -- 237 |
39 -- 110 |
cysteine desulfurase |
|
_____________181___________________________________________________________________________238\n_____________|_____________________________________________________________________________|\n5'-CAC...GCGCC______U_______UUAC_____U__AAUUG________________AC____A_______________________CUCCC...UCG-3'\n______________AGCCUG___AGGAG_____CUGA_GA_____CCGA_________UCU__CUCG__UUAC_______UC_CGCGACCA\n______________||||||___|||||_____||||_||_____||||_________|||__|||:__||||_______||_||||||||\n______________UCGGAC___UCCUC_____GACU_CU_____GGCU_________AGA__GAGU__AAUG_______AG_GCGCUGGU\n3'-UUU...ACUAA______UAC_____UAUUA____U__CA_______GACGCACCC_________CG____GCCGACU__A________CAACU...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________111___________________________________________________________________________38\n |
231 -- 237 |
39 -- 45 |
-44.4171 kcal/mol |
9.67698 kcal/mol |
23.3669 kcal/mol |
181 238@LB@ | |@LB@5'-CAC...GCGCC U UUAC U AAUUG AC A CUCCC...UCG-3'@LB@ AGCCUG AGGAG CUGA GA CCGA UCU CUCG UUAC UC CGCGACCA@LB@ |||||| ||||| |||| || |||| ||| |||: |||| || ||||||||@LB@ UCGGAC UCCUC GACU CU GGCU AGA GAGU AAUG AG GCGCUGGU@LB@3'-UUU...ACUAA UAC UAUUA U CA GACGCACCC CG GCCGACU A CAACU...GUU-5'@LB@ | |@LB@ 111 38@LB@@LB@@LB@Energy -11.38 kcal/mol@LB@Hybridization Energy -44.4171 kcal/mol@LB@Unfolding Energy - mRNA 9.67698 kcal/mol@LB@Unfolding Energy - sRNA 23.3669 kcal/mol@LB@@LB@Position - mRNA 182 -- 237@LB@Position - sRNA 39 -- 110@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 39 -- 45@LB@ |
13 |
1.26e-05 |
0.004211 |
pa3276 |
N/A |
-14.47 |
0.014594 |
182 -- 242 |
38 -- 108 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________181______________________________________________________________________243\n_____________|________________________________________________________________________|\n5'-CUU...UCCGU____UUCU____UACCC___U_________AUCCAUC_____A_______________C_____________CCGGG...ACA-3'\n______________UCUG____GGAG_____CUG_GGAGUCUGA________GUCU__________UGGCUG_AUC_CGCGACUGG\n______________:|||____||||_____|||_:|||||:||________||||__________:|||||_|||_||||||::|\n______________GGAC____CCUC_____GAC_UCUCAGGCU________CAGA__________GCCGAC_UAG_GCGCUGGUC\n3'-UUU...UAAUC____UACU____UAUUA___U_________GACGCACC____GAGUCGAAUG__________A_________AACUC...GUU-5'\n_____________|________________________________________________________________________|\n_____________109______________________________________________________________________37\n |
236 -- 242 |
38 -- 44 |
-54.8405 kcal/mol |
17.042 kcal/mol |
23.3354 kcal/mol |
181 243@LB@ | |@LB@5'-CUU...UCCGU UUCU UACCC U AUCCAUC A C CCGGG...ACA-3'@LB@ UCUG GGAG CUG GGAGUCUGA GUCU UGGCUG AUC CGCGACUGG@LB@ :||| |||| ||| :|||||:|| |||| :||||| ||| ||||||::|@LB@ GGAC CCUC GAC UCUCAGGCU CAGA GCCGAC UAG GCGCUGGUC@LB@3'-UUU...UAAUC UACU UAUUA U GACGCACC GAGUCGAAUG A AACUC...GUU-5'@LB@ | |@LB@ 109 37@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -54.8405 kcal/mol@LB@Unfolding Energy - mRNA 17.042 kcal/mol@LB@Unfolding Energy - sRNA 23.3354 kcal/mol@LB@@LB@Position - mRNA 182 -- 242@LB@Position - sRNA 38 -- 108@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 38 -- 44@LB@ |
68 |
0.0007335 |
0.0493 |
pa0794 |
N/A |
-9.72 |
0.203453 |
182 -- 194 |
107 -- 118 |
aconitate hydratase |
|
_____________181_____________________195\n_____________|_______________________|\n5'-CAU...ACACC________GAGUCCG____A___ACAGC...AGC-3'\n______________CCGUGAUU_______AGCC_UGA\n______________||||||||_______||||_|||\n______________GGCACUAA_______UCGG_ACU\n3'-UUU...UUUUU_______________________ACUCC...GUU-5'\n_____________|_______________________|\n_____________119_____________________106\n |
183 -- 189 |
111 -- 117 |
-17.4679 kcal/mol |
6.47077 kcal/mol |
2.24144 kcal/mol |
181 195@LB@ | |@LB@5'-CAU...ACACC GAGUCCG A ACAGC...AGC-3'@LB@ CCGUGAUU AGCC UGA@LB@ |||||||| |||| |||@LB@ GGCACUAA UCGG ACU@LB@3'-UUU...UUUUU ACUCC...GUU-5'@LB@ | |@LB@ 119 106@LB@@LB@@LB@Energy -9.72 kcal/mol@LB@Hybridization Energy -17.4679 kcal/mol@LB@Unfolding Energy - mRNA 6.47077 kcal/mol@LB@Unfolding Energy - sRNA 2.24144 kcal/mol@LB@@LB@Position - mRNA 182 -- 194@LB@Position - sRNA 107 -- 118@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 111 -- 117@LB@ |
84 |
0.001042 |
0.05699 |
pa3121 |
leuC |
-8.58 |
0.330521 |
182 -- 193 |
98 -- 110 |
3-isopropylmalate dehydratase large subunit |
|
_____________181___________194\n_____________|_____________|\n5'-GCA...AAAUG_____________AAUCC...UGC-3'\n______________AG_CUGAUGAGGA\n______________||_||||||||||\n______________UC_GACUACUCCU\n3'-UUU...ACUAA__G__________CUAUU...GUU-5'\n_____________|_____________|\n_____________111___________97\n |
187 -- 193 |
98 -- 104 |
-17.6185 kcal/mol |
6.87469 kcal/mol |
2.16105 kcal/mol |
181 194@LB@ | |@LB@5'-GCA...AAAUG AAUCC...UGC-3'@LB@ AG CUGAUGAGGA@LB@ || ||||||||||@LB@ UC GACUACUCCU@LB@3'-UUU...ACUAA G CUAUU...GUU-5'@LB@ | |@LB@ 111 97@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -17.6185 kcal/mol@LB@Unfolding Energy - mRNA 6.87469 kcal/mol@LB@Unfolding Energy - sRNA 2.16105 kcal/mol@LB@@LB@Position - mRNA 182 -- 193@LB@Position - sRNA 98 -- 110@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 98 -- 104@LB@ |
21 |
5.061e-05 |
0.01105 |
pa1778 |
cobA |
-17.87 |
0.001208 |
184 -- 227 |
69 -- 109 |
uroporphyrin-III C-methyltransferase |
|
_____________183____________________________________________228\n_____________|______________________________________________|\n5'-GGU...CGAAU______G___AAC__C_____GCG_U____________________GCGGG...UGG-3'\n______________GCCUGA_GAG___GA_GAUGA___G_AAG_GUCUGGCUG_GUGGGU\n______________||||||_|||___||_|||:|___|_|||_|||:|:|||_||||||\n______________CGGACU_CUC___CU_CUAUU___C_UUC_CAGGCUGAC_CACCCA\n3'-UUU...CUAAU______A______________AGA_____U_________G______GAGAG...GUU-5'\n_____________|______________________________________________|\n_____________110____________________________________________68\n |
215 -- 221 |
76 -- 82 |
-46.3721 kcal/mol |
15.5624 kcal/mol |
12.9463 kcal/mol |
183 228@LB@ | |@LB@5'-GGU...CGAAU G AAC C GCG U GCGGG...UGG-3'@LB@ GCCUGA GAG GA GAUGA G AAG GUCUGGCUG GUGGGU@LB@ |||||| ||| || |||:| | ||| |||:|:||| ||||||@LB@ CGGACU CUC CU CUAUU C UUC CAGGCUGAC CACCCA@LB@3'-UUU...CUAAU A AGA U G GAGAG...GUU-5'@LB@ | |@LB@ 110 68@LB@@LB@@LB@Energy -17.87 kcal/mol@LB@Hybridization Energy -46.3721 kcal/mol@LB@Unfolding Energy - mRNA 15.5624 kcal/mol@LB@Unfolding Energy - sRNA 12.9463 kcal/mol@LB@@LB@Position - mRNA 184 -- 227@LB@Position - sRNA 69 -- 109@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 76 -- 82@LB@ |
64 |
0.000634 |
0.04553 |
pa1832 |
N/A |
-15.82 |
0.005823 |
184 -- 249 |
39 -- 110 |
protease |
|
_____________183________________________________________________________________________250\n_____________|__________________________________________________________________________|\n5'-GUA...UCAAC___A____________UG____U_____________CGAAUAUGCG______U_____CAG_____________UGCUG...GCC-3'\n______________AGU__GA_GAGGGGGU____UG_GGAGUUC_AUUGC___________GGCUU_CUGGC___GA_C_CGUGACCG\n______________||:__||_||||:|:|____||_:||||:|_|:|||___________:||||_|:|||___||_|_||:||||:\n______________UCG__CU_CUCCUCUA____AC_UCUCAGG_UGACG___________UCGAA_GGCCG___CU_G_GCGCUGGU\n3'-UUU...ACUAA___GA__A________UUAG__U_______C_____CACCCAGAGAG_____U_____A____A_A________CAACU...GUU-5'\n_____________|__________________________________________________________________________|\n_____________111________________________________________________________________________38\n |
243 -- 249 |
39 -- 45 |
-57.1706 kcal/mol |
17.9919 kcal/mol |
23.3669 kcal/mol |
183 250@LB@ | |@LB@5'-GUA...UCAAC A UG U CGAAUAUGCG U CAG UGCUG...GCC-3'@LB@ AGU GA GAGGGGGU UG GGAGUUC AUUGC GGCUU CUGGC GA C CGUGACCG@LB@ ||: || ||||:|:| || :||||:| |:||| :|||| |:||| || | ||:||||:@LB@ UCG CU CUCCUCUA AC UCUCAGG UGACG UCGAA GGCCG CU G GCGCUGGU@LB@3'-UUU...ACUAA GA A UUAG U C CACCCAGAGAG U A A A CAACU...GUU-5'@LB@ | |@LB@ 111 38@LB@@LB@@LB@Energy -15.82 kcal/mol@LB@Hybridization Energy -57.1706 kcal/mol@LB@Unfolding Energy - mRNA 17.9919 kcal/mol@LB@Unfolding Energy - sRNA 23.3669 kcal/mol@LB@@LB@Position - mRNA 184 -- 249@LB@Position - sRNA 39 -- 110@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 39 -- 45@LB@ |
85 |
0.001072 |
0.05733 |
pa4430 |
N/A |
-13.41 |
0.028331 |
184 -- 204 |
101 -- 120 |
cytochrome b |
|
_____________183___________________205\n_____________|_____________________|\n5'-ACC...GCGUG____AG__GAA__________ACAAG...UCU-3'\n______________GACC__GA___AGCCUGAUGA\n______________:|||__||___||||||||||\n______________UUGG__CU___UCGGACUACU\n3'-UUU...AGUUU____CA__AA___________CCUCU...GUU-5'\n_____________|_____________________|\n_____________121___________________100\n |
198 -- 204 |
101 -- 107 |
-22.7142 kcal/mol |
7.05943 kcal/mol |
2.2437 kcal/mol |
183 205@LB@ | |@LB@5'-ACC...GCGUG AG GAA ACAAG...UCU-3'@LB@ GACC GA AGCCUGAUGA@LB@ :||| || ||||||||||@LB@ UUGG CU UCGGACUACU@LB@3'-UUU...AGUUU CA AA CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -13.41 kcal/mol@LB@Hybridization Energy -22.7142 kcal/mol@LB@Unfolding Energy - mRNA 7.05943 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 184 -- 204@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
134 |
0.002678 |
0.0912 |
pa1421 |
gbuA |
-12.45 |
0.050008 |
184 -- 195 |
107 -- 120 |
guanidinobutyrase |
|
_____________183____________196\n_____________|______________|\n5'-UCC...ACAAC______________ACCCC...CCG-3'\n______________GACCGUGA__GGCC\n______________:|||||||__:|||\n______________UUGGCACU__UCGG\n3'-UUU...AGUUU________AA____ACUAC...GUU-5'\n_____________|______________|\n_____________121____________106\n |
185 -- 191 |
113 -- 119 |
-18.3112 kcal/mol |
3.63401 kcal/mol |
2.2351 kcal/mol |
183 196@LB@ | |@LB@5'-UCC...ACAAC ACCCC...CCG-3'@LB@ GACCGUGA GGCC@LB@ :||||||| :|||@LB@ UUGGCACU UCGG@LB@3'-UUU...AGUUU AA ACUAC...GUU-5'@LB@ | |@LB@ 121 106@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -18.3112 kcal/mol@LB@Unfolding Energy - mRNA 3.63401 kcal/mol@LB@Unfolding Energy - sRNA 2.2351 kcal/mol@LB@@LB@Position - mRNA 184 -- 195@LB@Position - sRNA 107 -- 120@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 113 -- 119@LB@ |