62 |
0.0005356 |
0.0397 |
pa5012 |
waaF |
-13.04 |
0.035456 |
194 -- 235 |
70 -- 110 |
heptosyltransferase II |
|
_____________193___________________________________________236\n_____________|_____________________________________________|\n5'-ACG...UCCGG_______AU______AU______UCGUA_____CUC___G_____GGACA...UCG-3'\n______________AGCCUGA____GAGA___UCUGA_____GGUCC___CUG_GUGGG\n______________|||||||____||||___|||||_____:||||___|||_|||||\n______________UCGGACU____CUCU___AGACU_____UCAGG___GAC_CACCC\n3'-UUU...ACUAA_______ACUC____AUU_____UC________CU____G_____AGAGA...GUU-5'\n_____________|_____________________________________________|\n_____________111___________________________________________69\n |
194 -- 200 |
104 -- 110 |
-40.3278 kcal/mol |
14.3527 kcal/mol |
12.939 kcal/mol |
193 236@LB@ | |@LB@5'-ACG...UCCGG AU AU UCGUA CUC G GGACA...UCG-3'@LB@ AGCCUGA GAGA UCUGA GGUCC CUG GUGGG@LB@ ||||||| |||| ||||| :|||| ||| |||||@LB@ UCGGACU CUCU AGACU UCAGG GAC CACCC@LB@3'-UUU...ACUAA ACUC AUU UC CU G AGAGA...GUU-5'@LB@ | |@LB@ 111 69@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -40.3278 kcal/mol@LB@Unfolding Energy - mRNA 14.3527 kcal/mol@LB@Unfolding Energy - sRNA 12.939 kcal/mol@LB@@LB@Position - mRNA 194 -- 235@LB@Position - sRNA 70 -- 110@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 104 -- 110@LB@ |
118 |
0.002082 |
0.07999 |
pa5066 |
hisI |
-12.42 |
0.050876 |
194 -- 221 |
100 -- 123 |
phosphoribosyl-AMP cyclohydrolase |
|
_____________193__________________________222\n_____________|____________________________|\n5'-CGA...CGUGG_______A___AAGAC_____G______AUUCA...GGA-3'\n______________AAAGACC_UGA_____UGGCU_GAUGAG\n______________|||:|||_|||_____|:||:_||||||\n______________UUUUUGG_ACU_____AUCGG_CUACUC\n3'-UUU...CCCAG_______C___A_________A______CUCUA...GUU-5'\n_____________|____________________________|\n_____________124__________________________99\n |
194 -- 200 |
117 -- 123 |
-21.0853 kcal/mol |
6.41847 kcal/mol |
2.24995 kcal/mol |
193 222@LB@ | |@LB@5'-CGA...CGUGG A AAGAC G AUUCA...GGA-3'@LB@ AAAGACC UGA UGGCU GAUGAG@LB@ |||:||| ||| |:||: ||||||@LB@ UUUUUGG ACU AUCGG CUACUC@LB@3'-UUU...CCCAG C A A CUCUA...GUU-5'@LB@ | |@LB@ 124 99@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -21.0853 kcal/mol@LB@Unfolding Energy - mRNA 6.41847 kcal/mol@LB@Unfolding Energy - sRNA 2.24995 kcal/mol@LB@@LB@Position - mRNA 194 -- 221@LB@Position - sRNA 100 -- 123@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 117 -- 123@LB@ |
186 |
0.004909 |
0.1213 |
pa3889 |
N/A |
-13.61 |
0.025105 |
195 -- 204 |
101 -- 110 |
ABC transporter |
|
_____________194________205\n_____________|__________|\n5'-GUC...AAGGA__________ACCGA...UCA-3'\n______________GGCCUGAUGA\n______________:|||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
198 -- 204 |
101 -- 107 |
-17.7978 kcal/mol |
2.07405 kcal/mol |
2.11196 kcal/mol |
194 205@LB@ | |@LB@5'-GUC...AAGGA ACCGA...UCA-3'@LB@ GGCCUGAUGA@LB@ :|||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -17.7978 kcal/mol@LB@Unfolding Energy - mRNA 2.07405 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
129 |
0.002597 |
0.0912 |
pa2983 |
N/A |
-10.36 |
0.150975 |
196 -- 207 |
70 -- 82 |
translocation protein TolQ |
|
_____________195___________208\n_____________|_____________|\n5'-AGC...AUAUG_____________AACUG...UGC-3'\n______________CC_ACUGUGUGGG\n______________||_||||:|||||\n______________GG_UGACGCACCC\n3'-UUU...UCUCA__C__________AGAGA...GUU-5'\n_____________|_____________|\n_____________83____________69\n |
201 -- 207 |
70 -- 76 |
-20.9892 kcal/mol |
6.52553 kcal/mol |
4.10497 kcal/mol |
195 208@LB@ | |@LB@5'-AGC...AUAUG AACUG...UGC-3'@LB@ CC ACUGUGUGGG@LB@ || ||||:|||||@LB@ GG UGACGCACCC@LB@3'-UUU...UCUCA C AGAGA...GUU-5'@LB@ | |@LB@ 83 69@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -20.9892 kcal/mol@LB@Unfolding Energy - mRNA 6.52553 kcal/mol@LB@Unfolding Energy - sRNA 4.10497 kcal/mol@LB@@LB@Position - mRNA 196 -- 207@LB@Position - sRNA 70 -- 82@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 70 -- 76@LB@ |
27 |
6.94e-05 |
0.01177 |
pa5535 |
N/A |
-11.95 |
0.066023 |
197 -- 251 |
53 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________196______________________________________________________________________252\n_____________|________________________________________________________________________|\n5'-GAG...UUACC________ACCAAC____AC_______________UCA______U_____CC__C_________________AAGAG...GGG-3'\n______________AACCGUGA______GCCU______________CUG______CCG_GCUGU__GG_UUUCUCGGC__GCCGGC\n______________||||||||______||||______________|||______|||_:|||:__||_|:||||:||__:|||||\n______________UUGGCACU______CGGA______________GAC______GGC_UGACG__CC_AGAGAGUCG__UGGCCG\n3'-UUU...AGUUU________AAU_______CUACUCCUCUAUUA___UUCUCA_________CA__C_________AA______ACUAG...GUU-5'\n_____________|________________________________________________________________________|\n_____________121______________________________________________________________________52\n |
239 -- 245 |
61 -- 67 |
-49.0988 kcal/mol |
18.4451 kcal/mol |
18.7053 kcal/mol |
196 252@LB@ | |@LB@5'-GAG...UUACC ACCAAC AC UCA U CC C AAGAG...GGG-3'@LB@ AACCGUGA GCCU CUG CCG GCUGU GG UUUCUCGGC GCCGGC@LB@ |||||||| |||| ||| ||| :|||: || |:||||:|| :|||||@LB@ UUGGCACU CGGA GAC GGC UGACG CC AGAGAGUCG UGGCCG@LB@3'-UUU...AGUUU AAU CUACUCCUCUAUUA UUCUCA CA C AA ACUAG...GUU-5'@LB@ | |@LB@ 121 52@LB@@LB@@LB@Energy -11.95 kcal/mol@LB@Hybridization Energy -49.0988 kcal/mol@LB@Unfolding Energy - mRNA 18.4451 kcal/mol@LB@Unfolding Energy - sRNA 18.7053 kcal/mol@LB@@LB@Position - mRNA 197 -- 251@LB@Position - sRNA 53 -- 120@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 61 -- 67@LB@ |
138 |
0.002776 |
0.09245 |
pa0440 |
N/A |
-11.93 |
0.067049 |
197 -- 216 |
104 -- 120 |
oxidoreductase |
|
_____________196__________________217\n_____________|____________________|\n5'-CGA...GCUAC_________CGAUUC_____ACCAC...AGG-3'\n______________AACCGUGAU______CCUGA\n______________|||||||||______|||||\n______________UUGGCACUA______GGACU\n3'-UUU...AGUUU_________AUC________ACUCC...GUU-5'\n_____________|____________________|\n_____________121__________________103\n |
199 -- 205 |
112 -- 118 |
-17.8806 kcal/mol |
3.71535 kcal/mol |
2.24182 kcal/mol |
196 217@LB@ | |@LB@5'-CGA...GCUAC CGAUUC ACCAC...AGG-3'@LB@ AACCGUGAU CCUGA@LB@ ||||||||| |||||@LB@ UUGGCACUA GGACU@LB@3'-UUU...AGUUU AUC ACUCC...GUU-5'@LB@ | |@LB@ 121 103@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -17.8806 kcal/mol@LB@Unfolding Energy - mRNA 3.71535 kcal/mol@LB@Unfolding Energy - sRNA 2.24182 kcal/mol@LB@@LB@Position - mRNA 197 -- 216@LB@Position - sRNA 104 -- 120@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 112 -- 118@LB@ |
187 |
0.004933 |
0.1213 |
pa0613 |
N/A |
-16.40 |
0.003821 |
197 -- 220 |
101 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________196______________________221\n_____________|________________________|\n5'-GAC...GACAC_________CAA____AUC_____AAUGC...CCA-3'\n______________GACCGUGAU___AGCC___GAUGA\n______________:||||||||___||||___|||||\n______________UUGGCACUA___UCGG___CUACU\n3'-UUU...AGUUU_________A______A_______CCUCU...GUU-5'\n_____________|________________________|\n_____________121______________________100\n |
199 -- 205 |
112 -- 118 |
-24.1405 kcal/mol |
5.50451 kcal/mol |
2.2437 kcal/mol |
196 221@LB@ | |@LB@5'-GAC...GACAC CAA AUC AAUGC...CCA-3'@LB@ GACCGUGAU AGCC GAUGA@LB@ :|||||||| |||| |||||@LB@ UUGGCACUA UCGG CUACU@LB@3'-UUU...AGUUU A A CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -24.1405 kcal/mol@LB@Unfolding Energy - mRNA 5.50451 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 197 -- 220@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 112 -- 118@LB@ |
48 |
0.0003226 |
0.03063 |
pa2507 |
catA |
-12.73 |
0.042466 |
203 -- 291 |
39 -- 120 |
catechol 1 2-dioxygenase |
|
_____________202_______________________________________________________________________________________________292\n_____________|_________________________________________________________________________________________________|\n5'-AUC...GCCAU________AGAUUUCCCAGACU________UCC__CGCU___UC______G__A______GCCAG______A_GA__G______________C____AGGCC...UGG-3'\n______________GACCGUGA______________GCC_GAUG___AG____UCU__GAAGAG_CC____GCG_______CUCA_C__AC_CGGC_GAUC_CGCG_ACCA\n______________:|||||||______________|||_||||___||____|||__||||||_||____|||_______||||_|__||_||||_||||_||||_||||\n______________UUGGCACU______________CGG_CUAC___UC____AGA__CUUCUC_GG____CGC_______GAGU_G__UG_GCCG_CUAG_GCGC_UGGU\n3'-UUU...AGUUU________AAU______________A____UCC__UAUU___________A__CUGA___ACCCAGA____C_AA_______A____A_________CAACU...GUU-5'\n_____________|_________________________________________________________________________________________________|\n_____________121_______________________________________________________________________________________________38\n |
204 -- 210 |
113 -- 119 |
-61.825 kcal/mol |
25.692 kcal/mol |
23.4063 kcal/mol |
202 292@LB@ | |@LB@5'-AUC...GCCAU AGAUUUCCCAGACU UCC CGCU UC G A GCCAG A GA G C AGGCC...UGG-3'@LB@ GACCGUGA GCC GAUG AG UCU GAAGAG CC GCG CUCA C AC CGGC GAUC CGCG ACCA@LB@ :||||||| ||| |||| || ||| |||||| || ||| |||| | || |||| |||| |||| ||||@LB@ UUGGCACU CGG CUAC UC AGA CUUCUC GG CGC GAGU G UG GCCG CUAG GCGC UGGU@LB@3'-UUU...AGUUU AAU A UCC UAUU A CUGA ACCCAGA C AA A A CAACU...GUU-5'@LB@ | |@LB@ 121 38@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -61.825 kcal/mol@LB@Unfolding Energy - mRNA 25.692 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 39 -- 120@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 113 -- 119@LB@ |
115 |
0.001984 |
0.07883 |
pa3002 |
mfd |
-15.72 |
0.006234 |
203 -- 232 |
53 -- 84 |
transcription-repair coupling factor |
|
_____________202_______________________________233\n_____________|_________________________________|\n5'-GAU...CCCGU_____U_______C______C____C_______CAGCG...CCG-3'\n______________GUCCG_ACUGCGU____UUC_CAGC_UGCCGGC\n______________|||||_|||||||____:||_||||_|:|||||\n______________CAGGC_UGACGCA____GAG_GUCG_AUGGCCG\n3'-UUU...CUUCU_____________CCCA___A____A_______ACUAG...GUU-5'\n_____________|_________________________________|\n_____________85________________________________52\n |
226 -- 232 |
53 -- 59 |
-40.2071 kcal/mol |
10.3261 kcal/mol |
14.162 kcal/mol |
202 233@LB@ | |@LB@5'-GAU...CCCGU U C C C CAGCG...CCG-3'@LB@ GUCCG ACUGCGU UUC CAGC UGCCGGC@LB@ ||||| ||||||| :|| |||| |:|||||@LB@ CAGGC UGACGCA GAG GUCG AUGGCCG@LB@3'-UUU...CUUCU CCCA A A ACUAG...GUU-5'@LB@ | |@LB@ 85 52@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -40.2071 kcal/mol@LB@Unfolding Energy - mRNA 10.3261 kcal/mol@LB@Unfolding Energy - sRNA 14.162 kcal/mol@LB@@LB@Position - mRNA 203 -- 232@LB@Position - sRNA 53 -- 84@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 53 -- 59@LB@ |
200 |
0.005522 |
0.1269 |
pa1052 |
N/A |
-14.49 |
0.014391 |
203 -- 224 |
103 -- 123 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________202____________________225\n_____________|______________________|\n5'-AUG...CUGAU______________CU______UCGUU...AGG-3'\n______________GAAAAUCGUGAUUG__CCUGAU\n______________:||||:|||||||:__||||||\n______________UUUUUGGCACUAAU__GGACUA\n3'-UUU...CCCAG______________C_______CUCCU...GUU-5'\n_____________|______________________|\n_____________124____________________102\n |
210 -- 216 |
110 -- 116 |
-22.3823 kcal/mol |
5.65319 kcal/mol |
2.24344 kcal/mol |
202 225@LB@ | |@LB@5'-AUG...CUGAU CU UCGUU...AGG-3'@LB@ GAAAAUCGUGAUUG CCUGAU@LB@ :||||:|||||||: ||||||@LB@ UUUUUGGCACUAAU GGACUA@LB@3'-UUU...CCCAG C CUCCU...GUU-5'@LB@ | |@LB@ 124 102@LB@@LB@@LB@Energy -14.49 kcal/mol@LB@Hybridization Energy -22.3823 kcal/mol@LB@Unfolding Energy - mRNA 5.65319 kcal/mol@LB@Unfolding Energy - sRNA 2.24344 kcal/mol@LB@@LB@Position - mRNA 203 -- 224@LB@Position - sRNA 103 -- 123@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 110 -- 116@LB@ |