| 32 |
8.271e-05 |
0.01177 |
pa5176 |
N/A |
-17.77 |
0.001308 |
216 -- 255 |
75 -- 119 |
ADP-ribose diphosphatase NudE |
|
_____________215_____________________________________________256\n_____________|_______________________________________________|\n5'-GAA...AACCC_____ACUC___________C_____C___GC_______________UCGAU...AGC-3'\n______________ACCGU_____GCC_____AG_GAGAU_GUC__GAAGAG_CCGACUGU\n______________|||||_____|||_____||_|||||_:||__||||||_|||||||:\n______________UGGCA_____CGG_____UC_CUCUA_UAG__CUUCUC_GGCUGACG\n3'-UUU...GUUUU_____CUAAU___ACUAC________U___A_______A________CACCC...GUU-5'\n_____________|_______________________________________________|\n_____________120_____________________________________________74\n |
249 -- 255 |
75 -- 81 |
-41.4292 kcal/mol |
11.4765 kcal/mol |
12.1884 kcal/mol |
215 256@LB@ | |@LB@5'-GAA...AACCC ACUC C C GC UCGAU...AGC-3'@LB@ ACCGU GCC AG GAGAU GUC GAAGAG CCGACUGU@LB@ ||||| ||| || ||||| :|| |||||| |||||||:@LB@ UGGCA CGG UC CUCUA UAG CUUCUC GGCUGACG@LB@3'-UUU...GUUUU CUAAU ACUAC U A A CACCC...GUU-5'@LB@ | |@LB@ 120 74@LB@@LB@@LB@Energy -17.77 kcal/mol@LB@Hybridization Energy -41.4292 kcal/mol@LB@Unfolding Energy - mRNA 11.4765 kcal/mol@LB@Unfolding Energy - sRNA 12.1884 kcal/mol@LB@@LB@Position - mRNA 216 -- 255@LB@Position - sRNA 75 -- 119@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 148 |
0.003408 |
0.1053 |
pa1533 |
N/A |
-10.12 |
0.169364 |
218 -- 231 |
101 -- 120 |
nucleoid-associated protein |
|
_____________217__________________232\n_____________|____________________|\n5'-AGA...GGCAU____________________AGCAG...CCG-3'\n______________GGCCG______GCCUGAUGA\n______________::|||______|||||||||\n______________UUGGC______CGGACUACU\n3'-UUU...AGUUU_____ACUAAU_________CCUCU...GUU-5'\n_____________|____________________|\n_____________121__________________100\n |
225 -- 231 |
101 -- 107 |
-19.3791 kcal/mol |
7.01958 kcal/mol |
2.2437 kcal/mol |
217 232@LB@ | |@LB@5'-AGA...GGCAU AGCAG...CCG-3'@LB@ GGCCG GCCUGAUGA@LB@ ::||| |||||||||@LB@ UUGGC CGGACUACU@LB@3'-UUU...AGUUU ACUAAU CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -19.3791 kcal/mol@LB@Unfolding Energy - mRNA 7.01958 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 218 -- 231@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 105 |
0.00174 |
0.07531 |
pa4182 |
N/A |
-13.56 |
0.025913 |
222 -- 265 |
39 -- 89 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________221__________________________________________________266\n_____________|____________________________________________________|\n5'-ACG...AUUUC____________C___CA____________GCA__C__________G_____UCCGC...CGG-3'\n______________GAAGAGUCCGAC__CG__GG_C_____GCU___CG_GCUGAUC_CG_GACUA\n______________||||||||||||__||__||_|_____|||___||_|||||||_||_|||:|\n______________CUUCUCAGGCUG__GC__CC_G_____CGA___GC_CGACUAG_GC_CUGGU\n3'-UUU...UUAGA____________AC__AC__A_AGAGU___AUG__________A__G_____CAACU...GUU-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________38\n |
251 -- 257 |
48 -- 54 |
-52.115 kcal/mol |
19.5257 kcal/mol |
19.0319 kcal/mol |
221 266@LB@ | |@LB@5'-ACG...AUUUC C CA GCA C G UCCGC...CGG-3'@LB@ GAAGAGUCCGAC CG GG C GCU CG GCUGAUC CG GACUA@LB@ |||||||||||| || || | ||| || ||||||| || |||:|@LB@ CUUCUCAGGCUG GC CC G CGA GC CGACUAG GC CUGGU@LB@3'-UUU...UUAGA AC AC A AGAGU AUG A G CAACU...GUU-5'@LB@ | |@LB@ 90 38@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -52.115 kcal/mol@LB@Unfolding Energy - mRNA 19.5257 kcal/mol@LB@Unfolding Energy - sRNA 19.0319 kcal/mol@LB@@LB@Position - mRNA 222 -- 265@LB@Position - sRNA 39 -- 89@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 170 |
0.004404 |
0.117 |
pa0562 |
N/A |
-14.73 |
0.012303 |
222 -- 237 |
74 -- 91 |
hydrolase |
pa2067 |
_____________221________________238\n_____________|__________________|\n5'-AUC...ACGCA____UU____________ACGGC...CCU-3'\n______________CUGA____UCCGACUGCG\n______________||||____||||||||||\n______________GACU____AGGCUGACGC\n3'-UUU...UAUUA____UCUC__________ACCCA...GUU-5'\n_____________|__________________|\n_____________92_________________73\n |
231 -- 237 |
74 -- 80 |
-23.3949 kcal/mol |
2.784 kcal/mol |
5.88671 kcal/mol |
221 238@LB@ | |@LB@5'-AUC...ACGCA UU ACGGC...CCU-3'@LB@ CUGA UCCGACUGCG@LB@ |||| ||||||||||@LB@ GACU AGGCUGACGC@LB@3'-UUU...UAUUA UCUC ACCCA...GUU-5'@LB@ | |@LB@ 92 73@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.3949 kcal/mol@LB@Unfolding Energy - mRNA 2.784 kcal/mol@LB@Unfolding Energy - sRNA 5.88671 kcal/mol@LB@@LB@Position - mRNA 222 -- 237@LB@Position - sRNA 74 -- 91@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 177 |
0.004514 |
0.1172 |
pa4639 |
N/A |
-11.28 |
0.094804 |
222 -- 231 |
101 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________221________232\n_____________|__________|\n5'-GUC...UGCUC__________CCGCA...UUA-3'\n______________AGCCUGAUGA\n______________||||||||||\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
225 -- 231 |
101 -- 107 |
-16.5496 kcal/mol |
3.15503 kcal/mol |
2.11196 kcal/mol |
221 232@LB@ | |@LB@5'-GUC...UGCUC CCGCA...UUA-3'@LB@ AGCCUGAUGA@LB@ ||||||||||@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -11.28 kcal/mol@LB@Hybridization Energy -16.5496 kcal/mol@LB@Unfolding Energy - mRNA 3.15503 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 222 -- 231@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 96 |
0.00134 |
0.06355 |
pa1641 |
N/A |
-15.72 |
0.006244 |
223 -- 294 |
34 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________222______________________________________________________________________________________295\n_____________|________________________________________________________________________________________|\n5'-CGU...UCUGC____CC___C_____CCCU___________________________CC__CAAGACC__C______GA__A__G__C___________ACGCGG-3'\n______________CCGU__UUG_CCUGA____GG________________CCGGCUGCG__GG_______GC_UACCGG__GA_CU_CG_CGACCAGUUGG\n______________||||__||:_|||||____||________________|||:|||||__||_______||_||||||__||_||_||_||||||||||:\n______________GGCA__AAU_GGACU____CC________________GGCUGACGC__CC_______CG_AUGGCC__CU_GA_GC_GCUGGUCAACU\n3'-UUU...UUUUU____CU___C_____ACU___UCUAUUAGACUUCUCA_________AC__AGAGAGU__A______GA__A_________________CACUG...GUU-5'\n_____________|________________________________________________________________________________________|\n_____________119______________________________________________________________________________________33\n |
288 -- 294 |
34 -- 40 |
-66.8102 kcal/mol |
27.6932 kcal/mol |
23.4074 kcal/mol |
222 295@LB@ | |@LB@5'-CGU...UCUGC CC C CCCU CC CAAGACC C GA A G C ACGCGG-3'@LB@ CCGU UUG CCUGA GG CCGGCUGCG GG GC UACCGG GA CU CG CGACCAGUUGG@LB@ |||| ||: ||||| || |||:||||| || || |||||| || || || ||||||||||:@LB@ GGCA AAU GGACU CC GGCUGACGC CC CG AUGGCC CU GA GC GCUGGUCAACU@LB@3'-UUU...UUUUU CU C ACU UCUAUUAGACUUCUCA AC AGAGAGU A GA A CACUG...GUU-5'@LB@ | |@LB@ 119 33@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -66.8102 kcal/mol@LB@Unfolding Energy - mRNA 27.6932 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 223 -- 294@LB@Position - sRNA 34 -- 118@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 128 |
0.00255 |
0.0912 |
pa3463 |
N/A |
-7.51 |
0.486845 |
225 -- 240 |
104 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________224_________________241\n_____________|___________________|\n5'-UCG...UGCUC_______ACAC________ACAAC...CGC-3'\n______________GAAGCCG_______CCUGA\n______________:||:|||_______|||||\n______________UUUUGGC_______GGACU\n3'-UUU...CCAGU_______ACUAAUC_____ACUCC...GUU-5'\n_____________|___________________|\n_____________123_________________103\n |
225 -- 231 |
116 -- 122 |
-12.6194 kcal/mol |
2.87159 kcal/mol |
2.24249 kcal/mol |
224 241@LB@ | |@LB@5'-UCG...UGCUC ACAC ACAAC...CGC-3'@LB@ GAAGCCG CCUGA@LB@ :||:||| |||||@LB@ UUUUGGC GGACU@LB@3'-UUU...CCAGU ACUAAUC ACUCC...GUU-5'@LB@ | |@LB@ 123 103@LB@@LB@@LB@Energy -7.51 kcal/mol@LB@Hybridization Energy -12.6194 kcal/mol@LB@Unfolding Energy - mRNA 2.87159 kcal/mol@LB@Unfolding Energy - sRNA 2.24249 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 104 -- 122@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 116 -- 122@LB@ |
| 195 |
0.005273 |
0.1243 |
pa4698 |
N/A |
-10.50 |
0.140691 |
227 -- 236 |
35 -- 44 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________226________237\n_____________|__________|\n5'-CUC...CUGGC__________UUGCU...AAG-3'\n______________CGACCAGUUG\n______________||||||||||\n______________GCUGGUCAAC\n3'-UUU...AGAGC__________UCACU...GUU-5'\n_____________|__________|\n_____________45_________34\n |
230 -- 236 |
35 -- 41 |
-16.2278 kcal/mol |
3.48351 kcal/mol |
2.24737 kcal/mol |
226 237@LB@ | |@LB@5'-CUC...CUGGC UUGCU...AAG-3'@LB@ CGACCAGUUG@LB@ ||||||||||@LB@ GCUGGUCAAC@LB@3'-UUU...AGAGC UCACU...GUU-5'@LB@ | |@LB@ 45 34@LB@@LB@@LB@Energy -10.50 kcal/mol@LB@Hybridization Energy -16.2278 kcal/mol@LB@Unfolding Energy - mRNA 3.48351 kcal/mol@LB@Unfolding Energy - sRNA 2.24737 kcal/mol@LB@@LB@Position - mRNA 227 -- 236@LB@Position - sRNA 35 -- 44@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 15 |
2.583e-05 |
0.007914 |
pa3049 |
rmf |
-22.33 |
0.000014 |
230 -- 282 |
40 -- 88 |
ribosome modulation factor |
|
_____________229____________________________________________________283\n_____________|______________________________________________________|\n5'-CGA...UUGGA________UU_U_______UUA__AGAA____AUA______AA___________UUUGU...AUC-3'\n______________AAGAG_CC__C_UGCGUGG___UC____CGGC___ACCGGU__AUCUCGUGAUC\n______________|||||_||__|_|||||||___||____|:||___|||||:__||||||:||:|\n______________UUCUC_GG__G_ACGCACC___AG____GUCG___UGGCCG__UAGAGCGCUGG\n3'-UUU...UAGAC_____A__CU_________CAG__A_______AA_______AC___________UCAAC...GUU-5'\n_____________|______________________________________________________|\n_____________89_____________________________________________________39\n |
276 -- 282 |
40 -- 46 |
-52.7199 kcal/mol |
11.3783 kcal/mol |
19.0139 kcal/mol |
229 283@LB@ | |@LB@5'-CGA...UUGGA UU U UUA AGAA AUA AA UUUGU...AUC-3'@LB@ AAGAG CC C UGCGUGG UC CGGC ACCGGU AUCUCGUGAUC@LB@ ||||| || | ||||||| || |:|| |||||: ||||||:||:|@LB@ UUCUC GG G ACGCACC AG GUCG UGGCCG UAGAGCGCUGG@LB@3'-UUU...UAGAC A CU CAG A AA AC UCAAC...GUU-5'@LB@ | |@LB@ 89 39@LB@@LB@@LB@Energy -22.33 kcal/mol@LB@Hybridization Energy -52.7199 kcal/mol@LB@Unfolding Energy - mRNA 11.3783 kcal/mol@LB@Unfolding Energy - sRNA 19.0139 kcal/mol@LB@@LB@Position - mRNA 230 -- 282@LB@Position - sRNA 40 -- 88@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 145 |
0.003161 |
0.1002 |
pa4147 |
acoR |
-9.16 |
0.260996 |
230 -- 255 |
98 -- 121 |
transcriptional regulator AcoR |
pa4021 |
_____________229_________________________256\n_____________|___________________________|\n5'-UAG...CAUGU________UC_____G__UCC______ACGCC...UCG-3'\n______________GGACUGUG___AGCC_UG___UGAGGA\n______________::||:|||___||||_||___||||||\n______________UUUGGCAC___UCGG_AC___ACUCCU\n3'-UUU...CAGUU________UAA_______U________CUAUU...GUU-5'\n_____________|___________________________|\n_____________122_________________________97\n |
231 -- 237 |
114 -- 120 |
-22.6885 kcal/mol |
11.2814 kcal/mol |
2.25186 kcal/mol |
229 256@LB@ | |@LB@5'-UAG...CAUGU UC G UCC ACGCC...UCG-3'@LB@ GGACUGUG AGCC UG UGAGGA@LB@ ::||:||| |||| || ||||||@LB@ UUUGGCAC UCGG AC ACUCCU@LB@3'-UUU...CAGUU UAA U CUAUU...GUU-5'@LB@ | |@LB@ 122 97@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -22.6885 kcal/mol@LB@Unfolding Energy - mRNA 11.2814 kcal/mol@LB@Unfolding Energy - sRNA 2.25186 kcal/mol@LB@@LB@Position - mRNA 230 -- 255@LB@Position - sRNA 98 -- 121@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 114 -- 120@LB@ |
