4 |
5.154e-07 |
0.0005922 |
pa1581 |
sdhC |
-15.05 |
0.009907 |
206 -- 221 |
108 -- 123 |
succinate dehydrogenase subunit C |
|
_____________205______________222\n_____________|________________|\n5'-ACG...GUGAA___________A____AAACG...CUG-3'\n______________AAAAGCCGUGA_UAGC\n______________||||:||||||_||||\n______________UUUUUGGCACU_AUCG\n3'-UUU...CCCAG___________A____GACUA...GUU-5'\n_____________|________________|\n_____________124______________107\n |
210 -- 216 |
113 -- 119 |
-19.67 kcal/mol |
2.45872 kcal/mol |
2.16544 kcal/mol |
205 222@LB@ | |@LB@5'-ACG...GUGAA A AAACG...CUG-3'@LB@ AAAAGCCGUGA UAGC@LB@ ||||:|||||| ||||@LB@ UUUUUGGCACU AUCG@LB@3'-UUU...CCCAG A GACUA...GUU-5'@LB@ | |@LB@ 124 107@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -19.67 kcal/mol@LB@Unfolding Energy - mRNA 2.45872 kcal/mol@LB@Unfolding Energy - sRNA 2.16544 kcal/mol@LB@@LB@Position - mRNA 206 -- 221@LB@Position - sRNA 108 -- 123@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 113 -- 119@LB@ |
181 |
0.004727 |
0.1199 |
pa2509 |
catB |
-12.44 |
0.050225 |
208 -- 226 |
106 -- 121 |
muconate cycloisomerase I |
|
_____________207_________________227\n_____________|___________________|\n5'-GGC...GAGCC__________CCAA_____CGAGU...CCC-3'\n______________AAGCCGUGAU____AGCCU\n______________||:|||||||____|||||\n______________UUUGGCACUA____UCGGA\n3'-UUU...CAGUU__________A________CUACU...GUU-5'\n_____________|___________________|\n_____________122_________________105\n |
211 -- 217 |
112 -- 118 |
-19.0549 kcal/mol |
4.37421 kcal/mol |
2.24058 kcal/mol |
207 227@LB@ | |@LB@5'-GGC...GAGCC CCAA CGAGU...CCC-3'@LB@ AAGCCGUGAU AGCCU@LB@ ||:||||||| |||||@LB@ UUUGGCACUA UCGGA@LB@3'-UUU...CAGUU A CUACU...GUU-5'@LB@ | |@LB@ 122 105@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -19.0549 kcal/mol@LB@Unfolding Energy - mRNA 4.37421 kcal/mol@LB@Unfolding Energy - sRNA 2.24058 kcal/mol@LB@@LB@Position - mRNA 208 -- 226@LB@Position - sRNA 106 -- 121@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 112 -- 118@LB@ |
30 |
8.033e-05 |
0.01177 |
pa3717 |
N/A |
-10.05 |
0.175331 |
209 -- 216 |
75 -- 82 |
FkbP-type peptidyl-prolyl cis-trans isomerase |
|
_____________208______217\n_____________|________|\n5'-UCU...AACGA________AGAUC...AAG-3'\n______________CCGACUGC\n______________||||||||\n______________GGCUGACG\n3'-UUU...UCUCA________CACCC...GUU-5'\n_____________|________|\n_____________83_______74\n |
210 -- 216 |
75 -- 81 |
-16.1929 kcal/mol |
2.05248 kcal/mol |
4.09516 kcal/mol |
208 217@LB@ | |@LB@5'-UCU...AACGA AGAUC...AAG-3'@LB@ CCGACUGC@LB@ ||||||||@LB@ GGCUGACG@LB@3'-UUU...UCUCA CACCC...GUU-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -16.1929 kcal/mol@LB@Unfolding Energy - mRNA 2.05248 kcal/mol@LB@Unfolding Energy - sRNA 4.09516 kcal/mol@LB@@LB@Position - mRNA 209 -- 216@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 75 -- 81@LB@ |
57 |
0.0004766 |
0.03843 |
pa1413 |
N/A |
-13.23 |
0.031643 |
209 -- 220 |
33 -- 44 |
transcriptional regulator |
pa0708 pa4203 |
_____________208__________221\n_____________|____________|\n5'-GGU...GAGUU____________GAUUU...CGA-3'\n______________CGGCCAGUUGAG\n______________||:|||||||||\n______________GCUGGUCAACUC\n3'-UUU...AGAGC____________ACUGU...GUU-5'\n_____________|____________|\n_____________45___________32\n |
214 -- 220 |
33 -- 39 |
-19.8607 kcal/mol |
4.38796 kcal/mol |
2.24787 kcal/mol |
208 221@LB@ | |@LB@5'-GGU...GAGUU GAUUU...CGA-3'@LB@ CGGCCAGUUGAG@LB@ ||:|||||||||@LB@ GCUGGUCAACUC@LB@3'-UUU...AGAGC ACUGU...GUU-5'@LB@ | |@LB@ 45 32@LB@@LB@@LB@Energy -13.23 kcal/mol@LB@Hybridization Energy -19.8607 kcal/mol@LB@Unfolding Energy - mRNA 4.38796 kcal/mol@LB@Unfolding Energy - sRNA 2.24787 kcal/mol@LB@@LB@Position - mRNA 209 -- 220@LB@Position - sRNA 33 -- 44@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 33 -- 39@LB@ |
178 |
0.004573 |
0.1181 |
pa0900 |
N/A |
-12.48 |
0.049102 |
209 -- 242 |
75 -- 111 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________208___________________________________243\n_____________|_____________________________________|\n5'-UCC...UCCGA_______CAACU_____CC________UA_____G__ACCCA...UGU-3'\n______________UAGCCUG_______GAU__UC_GAAGA__CCGAC_GC\n______________|||||||_______|||__||_|||||__|||||_||\n______________AUCGGAC_______CUA__AG_CUUCU__GGCUG_CG\n3'-UUU...CACUA_______UACUCCU___UU__A_____CA_____A__CACCC...GUU-5'\n_____________|_____________________________________|\n_____________112___________________________________74\n |
209 -- 215 |
105 -- 111 |
-29.9732 kcal/mol |
5.9478 kcal/mol |
11.5432 kcal/mol |
208 243@LB@ | |@LB@5'-UCC...UCCGA CAACU CC UA G ACCCA...UGU-3'@LB@ UAGCCUG GAU UC GAAGA CCGAC GC@LB@ ||||||| ||| || ||||| ||||| ||@LB@ AUCGGAC CUA AG CUUCU GGCUG CG@LB@3'-UUU...CACUA UACUCCU UU A CA A CACCC...GUU-5'@LB@ | |@LB@ 112 74@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -29.9732 kcal/mol@LB@Unfolding Energy - mRNA 5.9478 kcal/mol@LB@Unfolding Energy - sRNA 11.5432 kcal/mol@LB@@LB@Position - mRNA 209 -- 242@LB@Position - sRNA 75 -- 111@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 105 -- 111@LB@ |
50 |
0.0003784 |
0.03426 |
pa2805 |
N/A |
-14.24 |
0.016920 |
210 -- 223 |
74 -- 88 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________209_____________224\n_____________|_______________|\n5'-GCG...CGAAA_______________CGAAC...UCC-3'\n______________GAGAGUCUG_CUGCG\n______________:||||||:|_|||||\n______________UUCUCAGGC_GACGC\n3'-UUU...UAGAC_________U_____ACCCA...GUU-5'\n_____________|_______________|\n_____________89______________73\n |
212 -- 218 |
80 -- 86 |
-22.4876 kcal/mol |
2.4453 kcal/mol |
5.80631 kcal/mol |
209 224@LB@ | |@LB@5'-GCG...CGAAA CGAAC...UCC-3'@LB@ GAGAGUCUG CUGCG@LB@ :||||||:| |||||@LB@ UUCUCAGGC GACGC@LB@3'-UUU...UAGAC U ACCCA...GUU-5'@LB@ | |@LB@ 89 73@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -22.4876 kcal/mol@LB@Unfolding Energy - mRNA 2.4453 kcal/mol@LB@Unfolding Energy - sRNA 5.80631 kcal/mol@LB@@LB@Position - mRNA 210 -- 223@LB@Position - sRNA 74 -- 88@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 80 -- 86@LB@ |
153 |
0.003576 |
0.1073 |
pa5013 |
ilvE |
-11.20 |
0.098760 |
213 -- 229 |
103 -- 120 |
branched-chain amino acid aminotransferase |
|
_____________212________________230\n_____________|__________________|\n5'-UCU...UGGCC_____________G____CUGGU...AUG-3'\n______________GAUCGUGAU_GGC_UGAU\n______________:|:||||||_:||_||||\n______________UUGGCACUA_UCG_ACUA\n3'-UUU...AGUUU_________A___G____CUCCU...GUU-5'\n_____________|__________________|\n_____________121________________102\n |
215 -- 221 |
112 -- 118 |
-19.7956 kcal/mol |
6.35284 kcal/mol |
2.24268 kcal/mol |
212 230@LB@ | |@LB@5'-UCU...UGGCC G CUGGU...AUG-3'@LB@ GAUCGUGAU GGC UGAU@LB@ :|:|||||| :|| ||||@LB@ UUGGCACUA UCG ACUA@LB@3'-UUU...AGUUU A G CUCCU...GUU-5'@LB@ | |@LB@ 121 102@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -19.7956 kcal/mol@LB@Unfolding Energy - mRNA 6.35284 kcal/mol@LB@Unfolding Energy - sRNA 2.24268 kcal/mol@LB@@LB@Position - mRNA 213 -- 229@LB@Position - sRNA 103 -- 120@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 112 -- 118@LB@ |
199 |
0.005488 |
0.1268 |
pa1158 |
N/A |
-11.27 |
0.095596 |
213 -- 231 |
101 -- 120 |
two-component sensor |
|
_____________212__________________232\n_____________|____________________|\n5'-GCG...GACGC_____C_CGC__________ACGGC...CCG-3'\n______________AGCCG_G____GCCUGAUGA\n______________|:|||_|____|||||||||\n______________UUGGC_C____CGGACUACU\n3'-UUU...AGUUU_____A_UAAU_________CCUCU...GUU-5'\n_____________|____________________|\n_____________121__________________100\n |
225 -- 231 |
101 -- 107 |
-21.6813 kcal/mol |
8.17512 kcal/mol |
2.2437 kcal/mol |
212 232@LB@ | |@LB@5'-GCG...GACGC C CGC ACGGC...CCG-3'@LB@ AGCCG G GCCUGAUGA@LB@ |:||| | |||||||||@LB@ UUGGC C CGGACUACU@LB@3'-UUU...AGUUU A UAAU CCUCU...GUU-5'@LB@ | |@LB@ 121 100@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -21.6813 kcal/mol@LB@Unfolding Energy - mRNA 8.17512 kcal/mol@LB@Unfolding Energy - sRNA 2.2437 kcal/mol@LB@@LB@Position - mRNA 213 -- 231@LB@Position - sRNA 101 -- 120@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 101 -- 107@LB@ |
140 |
0.002911 |
0.09555 |
pa4656 |
N/A |
-13.59 |
0.025440 |
215 -- 238 |
100 -- 120 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________214______________________239\n_____________|________________________|\n5'-GCC...CUCUU_____GC___ACC___________UCGCC...GGC-3'\n______________GACCG__GGU___GGCCUGAUGGG\n______________:||||__|:|___:||||||||:|\n______________UUGGC__CUA___UCGGACUACUC\n3'-UUU...AGUUU_____A____A_____________CUCUA...GUU-5'\n_____________|________________________|\n_____________121______________________99\n |
232 -- 238 |
100 -- 106 |
-25.6163 kcal/mol |
9.78003 kcal/mol |
2.24919 kcal/mol |
214 239@LB@ | |@LB@5'-GCC...CUCUU GC ACC UCGCC...GGC-3'@LB@ GACCG GGU GGCCUGAUGGG@LB@ :|||| |:| :||||||||:|@LB@ UUGGC CUA UCGGACUACUC@LB@3'-UUU...AGUUU A A CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -25.6163 kcal/mol@LB@Unfolding Energy - mRNA 9.78003 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 215 -- 238@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 100 -- 106@LB@ |
150 |
0.003458 |
0.106 |
pa5558 |
atpF |
-11.25 |
0.096505 |
215 -- 228 |
107 -- 120 |
ATP synthase subunit B |
|
_____________214____________229\n_____________|______________|\n5'-CUC...AAUGC____C_________AGUCC...UGC-3'\n______________AACC_UGAUUGGCC\n______________||||_|||||:|||\n______________UUGG_ACUAAUCGG\n3'-UUU...AGUUU____C_________ACUAC...GUU-5'\n_____________|______________|\n_____________121____________106\n |
222 -- 228 |
107 -- 113 |
-18.4292 kcal/mol |
4.95427 kcal/mol |
2.2351 kcal/mol |
214 229@LB@ | |@LB@5'-CUC...AAUGC C AGUCC...UGC-3'@LB@ AACC UGAUUGGCC@LB@ |||| |||||:|||@LB@ UUGG ACUAAUCGG@LB@3'-UUU...AGUUU C ACUAC...GUU-5'@LB@ | |@LB@ 121 106@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -18.4292 kcal/mol@LB@Unfolding Energy - mRNA 4.95427 kcal/mol@LB@Unfolding Energy - sRNA 2.2351 kcal/mol@LB@@LB@Position - mRNA 215 -- 228@LB@Position - sRNA 107 -- 120@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 107 -- 113@LB@ |