| 109 |
0.001808 |
0.07562 |
pa0202 |
N/A |
-7.70 |
0.456423 |
178 -- 185 |
75 -- 82 |
amidase |
pa4342 |
_____________177______186\n_____________|________|\n5'-CCC...CCUUC________CAAGG...UGC-3'\n______________UCGACUGC\n______________:|||||||\n______________GGCUGACG\n3'-UUU...UCUCA________CACCC...GUU-5'\n_____________|________|\n_____________83_______74\n |
179 -- 185 |
75 -- 81 |
-13.4138 kcal/mol |
1.61599 kcal/mol |
4.09516 kcal/mol |
177 186@LB@ | |@LB@5'-CCC...CCUUC CAAGG...UGC-3'@LB@ UCGACUGC@LB@ :|||||||@LB@ GGCUGACG@LB@3'-UUU...UCUCA CACCC...GUU-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -7.70 kcal/mol@LB@Hybridization Energy -13.4138 kcal/mol@LB@Unfolding Energy - mRNA 1.61599 kcal/mol@LB@Unfolding Energy - sRNA 4.09516 kcal/mol@LB@@LB@Position - mRNA 178 -- 185@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 28 |
7.532e-05 |
0.01177 |
pa2865 |
N/A |
-15.38 |
0.007930 |
179 -- 247 |
40 -- 110 |
glycosylase |
|
_____________178__________________________________________________________________________248\n_____________|____________________________________________________________________________|\n5'-CCG...CAUCG_______CCUCU_____CCUGGA___C_C________________________U_____U______G_________CUUGC...AAC-3'\n______________AGCCUGG_____GGAGA______UGA_G_GUCUG_UUGC_UG___CUUUC_GC_UUGCC_GCUGGU_CUCGC_ACC\n______________||||||:_____|||||______|||_|_|||:|_:|||_||___||:||_||_||:||_||||:|_|||||_|||\n______________UCGGACU_____CCUCU______ACU_C_CAGGC_GACG_AC___GAGAG_CG_AAUGG_CGACUA_GAGCG_UGG\n3'-UUU...ACUAA_______ACU_______AUUAG____U_U_____U____C__CCA_____U________C____________C___UCAAC...GUU-5'\n_____________|____________________________________________________________________________|\n_____________111__________________________________________________________________________39\n |
179 -- 185 |
104 -- 110 |
-64.7758 kcal/mol |
26.0418 kcal/mol |
23.3621 kcal/mol |
178 248@LB@ | |@LB@5'-CCG...CAUCG CCUCU CCUGGA C C U U G CUUGC...AAC-3'@LB@ AGCCUGG GGAGA UGA G GUCUG UUGC UG CUUUC GC UUGCC GCUGGU CUCGC ACC@LB@ ||||||: ||||| ||| | |||:| :||| || ||:|| || ||:|| ||||:| ||||| |||@LB@ UCGGACU CCUCU ACU C CAGGC GACG AC GAGAG CG AAUGG CGACUA GAGCG UGG@LB@3'-UUU...ACUAA ACU AUUAG U U U C CCA U C C UCAAC...GUU-5'@LB@ | |@LB@ 111 39@LB@@LB@@LB@Energy -15.38 kcal/mol@LB@Hybridization Energy -64.7758 kcal/mol@LB@Unfolding Energy - mRNA 26.0418 kcal/mol@LB@Unfolding Energy - sRNA 23.3621 kcal/mol@LB@@LB@Position - mRNA 179 -- 247@LB@Position - sRNA 40 -- 110@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 82 |
0.000993 |
0.05566 |
pa5549 |
glmS |
-14.85 |
0.011343 |
179 -- 208 |
71 -- 110 |
glucosamine--fructose-6-phosphate aminotransferase |
|
_____________178______________________________________209\n_____________|________________________________________|\n5'-CCG...GUCGA_______A__________________CC__A_________AAUCG...GCG-3'\n______________GGCCUGA__AGGAGA_______AAGA__CC___UGUGUGG\n______________:||||||__||||||_______||||__||___||:||||\n______________UCGGACU__UCCUCU_______UUCU__GG___ACGCACC\n3'-UUU...ACUAA_______AC______AUUAGAC____CA__CUG_______CAGAG...GUU-5'\n_____________|________________________________________|\n_____________111______________________________________70\n |
202 -- 208 |
71 -- 77 |
-33.9361 kcal/mol |
6.17828 kcal/mol |
12.9138 kcal/mol |
178 209@LB@ | |@LB@5'-CCG...GUCGA A CC A AAUCG...GCG-3'@LB@ GGCCUGA AGGAGA AAGA CC UGUGUGG@LB@ :|||||| |||||| |||| || ||:||||@LB@ UCGGACU UCCUCU UUCU GG ACGCACC@LB@3'-UUU...ACUAA AC AUUAGAC CA CUG CAGAG...GUU-5'@LB@ | |@LB@ 111 70@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -33.9361 kcal/mol@LB@Unfolding Energy - mRNA 6.17828 kcal/mol@LB@Unfolding Energy - sRNA 12.9138 kcal/mol@LB@@LB@Position - mRNA 179 -- 208@LB@Position - sRNA 71 -- 110@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 139 |
0.002816 |
0.0931 |
pa1173 |
napB |
-8.92 |
0.288683 |
179 -- 194 |
100 -- 120 |
cytochrome C protein NapB |
|
_____________178___________________195\n_____________|_____________________|\n5'-GCG...UGCUC_________________G___CGCGC...ACG-3'\n______________AACC_____UGGCCUGA_GAG\n______________||||_____|:||||||_|||\n______________UUGG_____AUCGGACU_CUC\n3'-UUU...AGUUU____CACUA________A___CUCUA...GUU-5'\n_____________|_____________________|\n_____________121___________________99\n |
184 -- 190 |
104 -- 110 |
-18.0021 kcal/mol |
6.83795 kcal/mol |
2.24919 kcal/mol |
178 195@LB@ | |@LB@5'-GCG...UGCUC G CGCGC...ACG-3'@LB@ AACC UGGCCUGA GAG@LB@ |||| |:|||||| |||@LB@ UUGG AUCGGACU CUC@LB@3'-UUU...AGUUU CACUA A CUCUA...GUU-5'@LB@ | |@LB@ 121 99@LB@@LB@@LB@Energy -8.92 kcal/mol@LB@Hybridization Energy -18.0021 kcal/mol@LB@Unfolding Energy - mRNA 6.83795 kcal/mol@LB@Unfolding Energy - sRNA 2.24919 kcal/mol@LB@@LB@Position - mRNA 179 -- 194@LB@Position - sRNA 100 -- 120@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 160 |
0.004014 |
0.115 |
pa3736 |
hom |
-12.18 |
0.058138 |
179 -- 203 |
72 -- 98 |
homoserine dehydrogenase |
|
_____________178_________________________204\n_____________|___________________________|\n5'-GAA...GUCGU______GA__________CA_______AAACC...CCG-3'\n______________AGGUGA__UGGGGAGUUC____GCGUG\n______________||:|:|__||::||||:|____|||||\n______________UCUAUU__ACUUCUCAGG____CGCAC\n3'-UUU...ACUCC______AG__________CUGA_____CCAGA...GUU-5'\n_____________|___________________________|\n_____________99__________________________71\n |
190 -- 196 |
81 -- 87 |
-26.8 kcal/mol |
8.47001 kcal/mol |
6.1492 kcal/mol |
178 204@LB@ | |@LB@5'-GAA...GUCGU GA CA AAACC...CCG-3'@LB@ AGGUGA UGGGGAGUUC GCGUG@LB@ ||:|:| ||::||||:| |||||@LB@ UCUAUU ACUUCUCAGG CGCAC@LB@3'-UUU...ACUCC AG CUGA CCAGA...GUU-5'@LB@ | |@LB@ 99 71@LB@@LB@@LB@Energy -12.18 kcal/mol@LB@Hybridization Energy -26.8 kcal/mol@LB@Unfolding Energy - mRNA 8.47001 kcal/mol@LB@Unfolding Energy - sRNA 6.1492 kcal/mol@LB@@LB@Position - mRNA 179 -- 203@LB@Position - sRNA 72 -- 98@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 81 -- 87@LB@ |
| 196 |
0.005339 |
0.1252 |
pa1085 |
flgJ |
-8.97 |
0.282317 |
179 -- 193 |
98 -- 119 |
peptidoglycan hydrolase FlgJ |
|
_____________178____________________194\n_____________|______________________|\n5'-GGU...ACCUG______________________CGACG...GCG-3'\n______________AUCGUGAUU_______UGAGGA\n______________|:|||||||_______||||||\n______________UGGCACUAA_______ACUCCU\n3'-UUU...GUUUU_________UCGGACU______CUAUU...GUU-5'\n_____________|______________________|\n_____________120____________________97\n |
181 -- 187 |
111 -- 117 |
-15.6275 kcal/mol |
4.40725 kcal/mol |
2.25153 kcal/mol |
178 194@LB@ | |@LB@5'-GGU...ACCUG CGACG...GCG-3'@LB@ AUCGUGAUU UGAGGA@LB@ |:||||||| ||||||@LB@ UGGCACUAA ACUCCU@LB@3'-UUU...GUUUU UCGGACU CUAUU...GUU-5'@LB@ | |@LB@ 120 97@LB@@LB@@LB@Energy -8.97 kcal/mol@LB@Hybridization Energy -15.6275 kcal/mol@LB@Unfolding Energy - mRNA 4.40725 kcal/mol@LB@Unfolding Energy - sRNA 2.25153 kcal/mol@LB@@LB@Position - mRNA 179 -- 193@LB@Position - sRNA 98 -- 119@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 111 -- 117@LB@ |
| 17 |
3.089e-05 |
0.008352 |
pa5396 |
N/A |
-7.92 |
0.424136 |
180 -- 186 |
104 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________179_____187\n_____________|_______|\n5'-CGC...CGCCC_______AAGGG...GCC-3'\n______________AGCCUGA\n______________|||||||\n______________UCGGACU\n3'-UUU...ACUAA_______ACUCC...GUU-5'\n_____________|_______|\n_____________111_____103\n |
180 -- 186 |
104 -- 110 |
-11.2317 kcal/mol |
1.21017 kcal/mol |
2.10482 kcal/mol |
179 187@LB@ | |@LB@5'-CGC...CGCCC AAGGG...GCC-3'@LB@ AGCCUGA@LB@ |||||||@LB@ UCGGACU@LB@3'-UUU...ACUAA ACUCC...GUU-5'@LB@ | |@LB@ 111 103@LB@@LB@@LB@Energy -7.92 kcal/mol@LB@Hybridization Energy -11.2317 kcal/mol@LB@Unfolding Energy - mRNA 1.21017 kcal/mol@LB@Unfolding Energy - sRNA 2.10482 kcal/mol@LB@@LB@Position - mRNA 180 -- 186@LB@Position - sRNA 104 -- 110@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 104 -- 110@LB@ |
| 179 |
0.004617 |
0.1185 |
pa4812 |
fdnG |
-14.50 |
0.014314 |
180 -- 196 |
94 -- 109 |
formate dehydrogenase-O major subunit |
|
_____________179_______________197\n_____________|_________________|\n5'-CCC...CCUUU________C________CACGA...CCG-3'\n______________GCCUGAUG_AGGAGAUG\n______________||||||||_|||||||:\n______________CGGACUAC_UCCUCUAU\n3'-UUU...CUAAU_________________UAGAC...GUU-5'\n_____________|_________________|\n_____________110_______________93\n |
190 -- 196 |
94 -- 100 |
-26.4921 kcal/mol |
6.69504 kcal/mol |
5.30224 kcal/mol |
179 197@LB@ | |@LB@5'-CCC...CCUUU C CACGA...CCG-3'@LB@ GCCUGAUG AGGAGAUG@LB@ |||||||| |||||||:@LB@ CGGACUAC UCCUCUAU@LB@3'-UUU...CUAAU UAGAC...GUU-5'@LB@ | |@LB@ 110 93@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -26.4921 kcal/mol@LB@Unfolding Energy - mRNA 6.69504 kcal/mol@LB@Unfolding Energy - sRNA 5.30224 kcal/mol@LB@@LB@Position - mRNA 180 -- 196@LB@Position - sRNA 94 -- 109@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 94 -- 100@LB@ |
| 2 |
9.847e-10 |
2.263e-06 |
pa5490 |
cc4 |
-23.49 |
0.000003 |
181 -- 254 |
56 -- 120 |
cytochrome C4 |
|
_____________180___________________________________________________________________________255\n_____________|_____________________________________________________________________________|\n5'-ACC...CCCUU______AAUUG______________ACAAACU____CGU___________U__ACCC_______GAC___C______CAUGC...UAU-3'\n______________AGCCGU_____GAUUAG_CUGAUGA________UCU___GAGUCUG_CUG_UG____UGGGUCU___CGG_CUUGCC\n______________|:||||_____||||||_|||||||________|||___|||||:|_|||_:|____|||||||___|:|_|||:||\n______________UUGGCA_____CUAAUC_GACUACU________AGA___CUCAGGC_GAC_GC____ACCCAGA___GUC_GAAUGG\n3'-UUU...AGUUU_________________G_______CCUCUAUU___CUU_______U_________________GA___________CCGAC...GUU-5'\n_____________|_____________________________________________________________________________|\n_____________121___________________________________________________________________________55\n |
235 -- 241 |
67 -- 73 |
-59.1342 kcal/mol |
19.5582 kcal/mol |
16.0942 kcal/mol |
180 255@LB@ | |@LB@5'-ACC...CCCUU AAUUG ACAAACU CGU U ACCC GAC C CAUGC...UAU-3'@LB@ AGCCGU GAUUAG CUGAUGA UCU GAGUCUG CUG UG UGGGUCU CGG CUUGCC@LB@ |:|||| |||||| ||||||| ||| |||||:| ||| :| ||||||| |:| |||:||@LB@ UUGGCA CUAAUC GACUACU AGA CUCAGGC GAC GC ACCCAGA GUC GAAUGG@LB@3'-UUU...AGUUU G CCUCUAUU CUU U GA CCGAC...GUU-5'@LB@ | |@LB@ 121 55@LB@@LB@@LB@Energy -23.49 kcal/mol@LB@Hybridization Energy -59.1342 kcal/mol@LB@Unfolding Energy - mRNA 19.5582 kcal/mol@LB@Unfolding Energy - sRNA 16.0942 kcal/mol@LB@@LB@Position - mRNA 181 -- 254@LB@Position - sRNA 56 -- 120@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 24 |
5.771e-05 |
0.01105 |
pa5035 |
gltD |
-10.90 |
0.115442 |
181 -- 216 |
79 -- 110 |
glutamate synthase subunit beta |
|
_____________180___________________________________217\n_____________|_____________________________________|\n5'-UCG...CCCGA___UG________UUUC____U_______C_______AUUCC...AGC-3'\n______________AGU__UGAUGAGG____GAUA_GUCUGAA__GUCUGA\n______________||:__||||||||____||||_:||||||__|||:||\n______________UCG__ACUACUCC____CUAU_UAGACUU__CAGGCU\n3'-UUU...ACUAA___G_________U_______________CU______GACGC...GUU-5'\n_____________|_____________________________________|\n_____________111___________________________________78\n |
203 -- 209 |
87 -- 93 |
-30.6009 kcal/mol |
8.30781 kcal/mol |
11.3934 kcal/mol |
180 217@LB@ | |@LB@5'-UCG...CCCGA UG UUUC U C AUUCC...AGC-3'@LB@ AGU UGAUGAGG GAUA GUCUGAA GUCUGA@LB@ ||: |||||||| |||| :|||||| |||:||@LB@ UCG ACUACUCC CUAU UAGACUU CAGGCU@LB@3'-UUU...ACUAA G U CU GACGC...GUU-5'@LB@ | |@LB@ 111 78@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -30.6009 kcal/mol@LB@Unfolding Energy - mRNA 8.30781 kcal/mol@LB@Unfolding Energy - sRNA 11.3934 kcal/mol@LB@@LB@Position - mRNA 181 -- 216@LB@Position - sRNA 79 -- 110@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 87 -- 93@LB@ |
