158 |
0.003862 |
0.1123 |
pa4780 |
N/A |
-10.69 |
0.128339 |
184 -- 207 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________183________________________208\n_____________|__________________________|\n5'-AGG...CCCGA_______C_______A_C_____A__CACCC...UGG-3'\n______________GGAACCG_G__UAGC_C_GAUGA_GA\n______________::|||||_|__||||_|_|||||_||\n______________UUUUGGC_C__AUCG_G_CUACU_CU\n3'-UUU...CCAGU_______A_UA______A_____C__CUAUU...GUU-5'\n_____________|__________________________|\n_____________123________________________97\n |
184 -- 190 |
116 -- 122 |
-18.2775 kcal/mol |
5.33909 kcal/mol |
2.25226 kcal/mol |
183 208@LB@ | |@LB@5'-AGG...CCCGA C A C A CACCC...UGG-3'@LB@ GGAACCG G UAGC C GAUGA GA@LB@ ::||||| | |||| | ||||| ||@LB@ UUUUGGC C AUCG G CUACU CU@LB@3'-UUU...CCAGU A UA A C CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -10.69 kcal/mol@LB@Hybridization Energy -18.2775 kcal/mol@LB@Unfolding Energy - mRNA 5.33909 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 184 -- 207@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 116 -- 122@LB@ |
193 |
0.005243 |
0.1243 |
pa3725 |
recJ |
-10.65 |
0.130688 |
184 -- 203 |
102 -- 119 |
single-stranded-DNA-specific exonuclease RecJ |
|
_____________183__________________204\n_____________|____________________|\n5'-CGU...GUCGA____AAC__GUGA_______CGUAU...GCG-3'\n______________GCCG___GA____CCUGAUG\n______________:|||___||____|||||||\n______________UGGC___CU____GGACUAC\n3'-UUU...GUUUU____A____AAUC_______UCCUC...GUU-5'\n_____________|____________________|\n_____________120__________________101\n |
197 -- 203 |
102 -- 108 |
-15.7224 kcal/mol |
2.82992 kcal/mol |
2.24274 kcal/mol |
183 204@LB@ | |@LB@5'-CGU...GUCGA AAC GUGA CGUAU...GCG-3'@LB@ GCCG GA CCUGAUG@LB@ :||| || |||||||@LB@ UGGC CU GGACUAC@LB@3'-UUU...GUUUU A AAUC UCCUC...GUU-5'@LB@ | |@LB@ 120 101@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -15.7224 kcal/mol@LB@Unfolding Energy - mRNA 2.82992 kcal/mol@LB@Unfolding Energy - sRNA 2.24274 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 102 -- 119@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 102 -- 108@LB@ |
29 |
7.803e-05 |
0.01177 |
pa5491 |
N/A |
-19.34 |
0.000334 |
185 -- 216 |
75 -- 108 |
cytochrome |
|
_____________184_________________________________217\n_____________|___________________________________|\n5'-GGG...UUCCC___________C______A______AA________UCGCA...CGU-3'\n______________CCUGAUGAGGA___GAUC_UGAAGA__CUG_CUGC\n______________|||||||||||___:|||_||||||__|:|_||||\n______________GGACUACUCCU___UUAG_ACUUCU__GGC_GACG\n3'-UUU...UAAUC___________CUA___________CA___U____CACCC...GUU-5'\n_____________|___________________________________|\n_____________109_________________________________74\n |
189 -- 195 |
98 -- 104 |
-37.6738 kcal/mol |
6.8106 kcal/mol |
11.5256 kcal/mol |
184 217@LB@ | |@LB@5'-GGG...UUCCC C A AA UCGCA...CGU-3'@LB@ CCUGAUGAGGA GAUC UGAAGA CUG CUGC@LB@ ||||||||||| :||| |||||| |:| ||||@LB@ GGACUACUCCU UUAG ACUUCU GGC GACG@LB@3'-UUU...UAAUC CUA CA U CACCC...GUU-5'@LB@ | |@LB@ 109 74@LB@@LB@@LB@Energy -19.34 kcal/mol@LB@Hybridization Energy -37.6738 kcal/mol@LB@Unfolding Energy - mRNA 6.8106 kcal/mol@LB@Unfolding Energy - sRNA 11.5256 kcal/mol@LB@@LB@Position - mRNA 185 -- 216@LB@Position - sRNA 75 -- 108@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 98 -- 104@LB@ |
35 |
0.0001057 |
0.01388 |
pa1103 |
N/A |
-18.12 |
0.000977 |
185 -- 207 |
81 -- 102 |
flagellar assembly protein FliH |
|
_____________184_____________________208\n_____________|_______________________|\n5'-CGA...GUGGC_________________U_____CCCAC...AGC-3'\n______________GAGGAGAUGAUCUGAGG_GGUCC\n______________||||||||:||||||:|_:||||\n______________CUCCUCUAUUAGACUUC_UCAGG\n3'-UUU...GACUA_______________________CUGAC...GUU-5'\n_____________|_______________________|\n_____________103_____________________80\n |
195 -- 201 |
86 -- 92 |
-35.642 kcal/mol |
10.0244 kcal/mol |
7.49511 kcal/mol |
184 208@LB@ | |@LB@5'-CGA...GUGGC U CCCAC...AGC-3'@LB@ GAGGAGAUGAUCUGAGG GGUCC@LB@ ||||||||:||||||:| :||||@LB@ CUCCUCUAUUAGACUUC UCAGG@LB@3'-UUU...GACUA CUGAC...GUU-5'@LB@ | |@LB@ 103 80@LB@@LB@@LB@Energy -18.12 kcal/mol@LB@Hybridization Energy -35.642 kcal/mol@LB@Unfolding Energy - mRNA 10.0244 kcal/mol@LB@Unfolding Energy - sRNA 7.49511 kcal/mol@LB@@LB@Position - mRNA 185 -- 207@LB@Position - sRNA 81 -- 102@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 86 -- 92@LB@ |
155 |
0.003654 |
0.1083 |
pa1551 |
N/A |
-14.46 |
0.014645 |
185 -- 205 |
100 -- 119 |
ferredoxin |
|
_____________184___________________206\n_____________|_____________________|\n5'-ACC...CCACU________AC__A________CAAAC...GGG-3'\n______________GCCGUGGU__GC_CUGAUGAG\n______________:|||||:|__||_||||||||\n______________UGGCACUA__CG_GACUACUC\n3'-UUU...GUUUU________AU___________CUCUA...GUU-5'\n_____________|_____________________|\n_____________120___________________99\n |
199 -- 205 |
100 -- 106 |
-27.0785 kcal/mol |
10.3705 kcal/mol |
2.24903 kcal/mol |
184 206@LB@ | |@LB@5'-ACC...CCACU AC A CAAAC...GGG-3'@LB@ GCCGUGGU GC CUGAUGAG@LB@ :|||||:| || ||||||||@LB@ UGGCACUA CG GACUACUC@LB@3'-UUU...GUUUU AU CUCUA...GUU-5'@LB@ | |@LB@ 120 99@LB@@LB@@LB@Energy -14.46 kcal/mol@LB@Hybridization Energy -27.0785 kcal/mol@LB@Unfolding Energy - mRNA 10.3705 kcal/mol@LB@Unfolding Energy - sRNA 2.24903 kcal/mol@LB@@LB@Position - mRNA 185 -- 205@LB@Position - sRNA 100 -- 119@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |
31 |
8.059e-05 |
0.01177 |
pa5164 |
rmlC |
-15.78 |
0.005968 |
187 -- 204 |
101 -- 122 |
dTDP-4-dehydrorhamnose 3 5-epimerase |
|
_____________186____________________205\n_____________|______________________|\n5'-ACC...UGACC_________UA___________AAGCG...GCG-3'\n______________GAGACCGUG______CUGAUGA\n______________:|:||||||______|||||||\n______________UUUUGGCAC______GACUACU\n3'-UUU...CCAGU_________UAAUCG_______CCUCU...GUU-5'\n_____________|______________________|\n_____________123____________________100\n |
198 -- 204 |
101 -- 107 |
-20.9444 kcal/mol |
2.92213 kcal/mol |
2.24427 kcal/mol |
186 205@LB@ | |@LB@5'-ACC...UGACC UA AAGCG...GCG-3'@LB@ GAGACCGUG CUGAUGA@LB@ :|:|||||| |||||||@LB@ UUUUGGCAC GACUACU@LB@3'-UUU...CCAGU UAAUCG CCUCU...GUU-5'@LB@ | |@LB@ 123 100@LB@@LB@@LB@Energy -15.78 kcal/mol@LB@Hybridization Energy -20.9444 kcal/mol@LB@Unfolding Energy - mRNA 2.92213 kcal/mol@LB@Unfolding Energy - sRNA 2.24427 kcal/mol@LB@@LB@Position - mRNA 187 -- 204@LB@Position - sRNA 101 -- 122@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 101 -- 107@LB@ |
56 |
0.0004529 |
0.03717 |
pa2678 |
N/A |
-16.50 |
0.003530 |
187 -- 235 |
44 -- 90 |
ABC transporter permease |
|
_____________186_________________________________________________236\n_____________|___________________________________________________|\n5'-GGU...CGCCG__________UU_____A_U___UCC________________CA_______CAGUC...CCA-3'\n______________UGGAGAGUUU__CUGUG_G_GGU___CUCUUGGU__ACCGGC__GUCUCGC\n______________||:|||||::__|||:|_|_|||___||||::|:__||||||__:||||||\n______________ACUUCUCAGG__GACGC_C_CCA___GAGAGUCG__UGGCCG__UAGAGCG\n3'-UUU...AUUAG__________CU_____A________________AA______AC_______CUGGU...GUU-5'\n_____________|___________________________________________________|\n_____________91__________________________________________________43\n |
229 -- 235 |
44 -- 50 |
-54.3997 kcal/mol |
18.981 kcal/mol |
18.9194 kcal/mol |
186 236@LB@ | |@LB@5'-GGU...CGCCG UU A U UCC CA CAGUC...CCA-3'@LB@ UGGAGAGUUU CUGUG G GGU CUCUUGGU ACCGGC GUCUCGC@LB@ ||:|||||:: |||:| | ||| ||||::|: |||||| :||||||@LB@ ACUUCUCAGG GACGC C CCA GAGAGUCG UGGCCG UAGAGCG@LB@3'-UUU...AUUAG CU A AA AC CUGGU...GUU-5'@LB@ | |@LB@ 91 43@LB@@LB@@LB@Energy -16.50 kcal/mol@LB@Hybridization Energy -54.3997 kcal/mol@LB@Unfolding Energy - mRNA 18.981 kcal/mol@LB@Unfolding Energy - sRNA 18.9194 kcal/mol@LB@@LB@Position - mRNA 187 -- 235@LB@Position - sRNA 44 -- 90@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 44 -- 50@LB@ |
86 |
0.001073 |
0.05733 |
pa0916 |
N/A |
-12.39 |
0.051807 |
188 -- 200 |
107 -- 119 |
ribosomal protein S12 methylthiotransferase RimO |
|
_____________187___________201\n_____________|_____________|\n5'-GUC...CGCCU____A________AUGUC...GCU-3'\n______________ACCG_GGUUAGCC\n______________||||_|:||||||\n______________UGGC_CUAAUCGG\n3'-UUU...GUUUU____A________ACUAC...GUU-5'\n_____________|_____________|\n_____________120___________106\n |
194 -- 200 |
107 -- 113 |
-18.1643 kcal/mol |
3.54951 kcal/mol |
2.23484 kcal/mol |
187 201@LB@ | |@LB@5'-GUC...CGCCU A AUGUC...GCU-3'@LB@ ACCG GGUUAGCC@LB@ |||| |:||||||@LB@ UGGC CUAAUCGG@LB@3'-UUU...GUUUU A ACUAC...GUU-5'@LB@ | |@LB@ 120 106@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -18.1643 kcal/mol@LB@Unfolding Energy - mRNA 3.54951 kcal/mol@LB@Unfolding Energy - sRNA 2.23484 kcal/mol@LB@@LB@Position - mRNA 188 -- 200@LB@Position - sRNA 107 -- 119@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 107 -- 113@LB@ |
191 |
0.005174 |
0.1243 |
pa4409 |
ftsQ |
-12.87 |
0.039132 |
188 -- 243 |
45 -- 102 |
cell division protein FtsQ |
|
_____________187__________________________________________________________244\n_____________|____________________________________________________________|\n5'-ACG...GAGGC__________GCCA____U____GU_____UCC____A______AAC_____G_______GCCGC...AAC-3'\n______________GAGGGGAUAA____UGAA_GG_C__ACUGC____GUC__UCAGC___CCGGU_GA_CUCG\n______________||||:|||||____||||_:|_|__|||||____|||__|||||___||||:_||_||||\n______________CUCCUCUAUU____ACUU_UC_G__UGACG____CAG__AGUCG___GGCCG_CU_GAGC\n3'-UUU...GACUA__________AG______C__A_GC_____CACC___AG_____AAU_____A__A____GCUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________103__________________________________________________________44\n |
190 -- 196 |
94 -- 100 |
-51.9774 kcal/mol |
17.8775 kcal/mol |
21.2308 kcal/mol |
187 244@LB@ | |@LB@5'-ACG...GAGGC GCCA U GU UCC A AAC G GCCGC...AAC-3'@LB@ GAGGGGAUAA UGAA GG C ACUGC GUC UCAGC CCGGU GA CUCG@LB@ ||||:||||| |||| :| | ||||| ||| ||||| ||||: || ||||@LB@ CUCCUCUAUU ACUU UC G UGACG CAG AGUCG GGCCG CU GAGC@LB@3'-UUU...GACUA AG C A GC CACC AG AAU A A GCUGG...GUU-5'@LB@ | |@LB@ 103 44@LB@@LB@@LB@Energy -12.87 kcal/mol@LB@Hybridization Energy -51.9774 kcal/mol@LB@Unfolding Energy - mRNA 17.8775 kcal/mol@LB@Unfolding Energy - sRNA 21.2308 kcal/mol@LB@@LB@Position - mRNA 188 -- 243@LB@Position - sRNA 45 -- 102@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 94 -- 100@LB@ |
16 |
3.003e-05 |
0.008352 |
pa2689 |
N/A |
-17.00 |
0.002414 |
189 -- 205 |
100 -- 117 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________188________________206\n_____________|__________________|\n5'-CGG...CAUAA__A__A____________AACCU...UGG-3'\n______________CG_GA__AGCCUGAUGAG\n______________||_||__|||||||||||\n______________GC_CU__UCGGACUACUC\n3'-UUU...UUUUG__A__AA___________CUCUA...GUU-5'\n_____________|__________________|\n_____________118________________99\n |
199 -- 205 |
100 -- 106 |
-22.2469 kcal/mol |
3.0121 kcal/mol |
2.23711 kcal/mol |
188 206@LB@ | |@LB@5'-CGG...CAUAA A A AACCU...UGG-3'@LB@ CG GA AGCCUGAUGAG@LB@ || || |||||||||||@LB@ GC CU UCGGACUACUC@LB@3'-UUU...UUUUG A AA CUCUA...GUU-5'@LB@ | |@LB@ 118 99@LB@@LB@@LB@Energy -17.00 kcal/mol@LB@Hybridization Energy -22.2469 kcal/mol@LB@Unfolding Energy - mRNA 3.0121 kcal/mol@LB@Unfolding Energy - sRNA 2.23711 kcal/mol@LB@@LB@Position - mRNA 189 -- 205@LB@Position - sRNA 100 -- 117@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 100 -- 106@LB@ |