123 |
0.00223 |
0.08331 |
pa0552 |
pgk |
-10.33 |
0.153234 |
163 -- 259 |
42 -- 119 |
phosphoglycerate kinase |
|
_____________162________________________________________________________________________________________________________260\n_____________|__________________________________________________________________________________________________________|\n5'-CAC...GCGCC_________________CAACAAGUACCCA____CU___U___AUGACCGUGU_______________ACCUCGAC___AAA___AA__G__U_____________GGACC...GCG-3'\n______________GCCGU_____GCCUGAU_____________AGGA__GAU_GUC__________UGAAGA___UGACUG________CUC___GGU__GC_CG_GCUGAUC_CGCGA\n______________:||||_____|||||||_____________||||__|||_:||__________||||||___:|||||________|||___:|:__:|_||_|||||||_|||||\n______________UGGCA_____CGGACUA_____________UCCU__CUA_UAG__________ACUUCU___GCUGAC________GAG___UCG__UG_GC_CGACUAG_GCGCU\n3'-UUU...GUUUU_____CUAAU_______C_____________________U___________________CAG______GCACCCA____AG____AA_____________A_____GGUCA...GUU-5'\n_____________|__________________________________________________________________________________________________________|\n_____________120________________________________________________________________________________________________________41\n |
248 -- 254 |
48 -- 54 |
-58.6651 kcal/mol |
25.0123 kcal/mol |
23.3319 kcal/mol |
162 260@LB@ | |@LB@5'-CAC...GCGCC CAACAAGUACCCA CU U AUGACCGUGU ACCUCGAC AAA AA G U GGACC...GCG-3'@LB@ GCCGU GCCUGAU AGGA GAU GUC UGAAGA UGACUG CUC GGU GC CG GCUGAUC CGCGA@LB@ :|||| ||||||| |||| ||| :|| |||||| :||||| ||| :|: :| || ||||||| |||||@LB@ UGGCA CGGACUA UCCU CUA UAG ACUUCU GCUGAC GAG UCG UG GC CGACUAG GCGCU@LB@3'-UUU...GUUUU CUAAU C U CAG GCACCCA AG AA A GGUCA...GUU-5'@LB@ | |@LB@ 120 41@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -58.6651 kcal/mol@LB@Unfolding Energy - mRNA 25.0123 kcal/mol@LB@Unfolding Energy - sRNA 23.3319 kcal/mol@LB@@LB@Position - mRNA 163 -- 259@LB@Position - sRNA 42 -- 119@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 48 -- 54@LB@ |
38 |
0.0001678 |
0.02029 |
pa4131 |
N/A |
-10.32 |
0.153559 |
164 -- 172 |
74 -- 82 |
iron-sulfur protein |
|
_____________163_______173\n_____________|_________|\n5'-CUC...GGGAA_________CCCCU...GCG-3'\n______________CCGGCUGCG\n______________|||:|||||\n______________GGCUGACGC\n3'-UUU...UCUCA_________ACCCA...GUU-5'\n_____________|_________|\n_____________83________73\n |
166 -- 172 |
74 -- 80 |
-17.7171 kcal/mol |
3.29242 kcal/mol |
4.10111 kcal/mol |
163 173@LB@ | |@LB@5'-CUC...GGGAA CCCCU...GCG-3'@LB@ CCGGCUGCG@LB@ |||:|||||@LB@ GGCUGACGC@LB@3'-UUU...UCUCA ACCCA...GUU-5'@LB@ | |@LB@ 83 73@LB@@LB@@LB@Energy -10.32 kcal/mol@LB@Hybridization Energy -17.7171 kcal/mol@LB@Unfolding Energy - mRNA 3.29242 kcal/mol@LB@Unfolding Energy - sRNA 4.10111 kcal/mol@LB@@LB@Position - mRNA 164 -- 172@LB@Position - sRNA 74 -- 82@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 74 -- 80@LB@ |
54 |
0.000431 |
0.03637 |
pa5355 |
glcD |
-9.87 |
0.190611 |
164 -- 178 |
41 -- 54 |
glycolate oxidase subunit GlcD |
|
_____________163_____________179\n_____________|_______________|\n5'-GCU...CGCUU_______C__C____AACCA...AAC-3'\n______________GCUGAUC_CG_CGAC\n______________|||||||_||_||||\n______________CGACUAG_GC_GCUG\n3'-UUU...AUGGC_______A_______GUCAA...GUU-5'\n_____________|_______________|\n_____________55______________40\n |
164 -- 170 |
48 -- 54 |
-19.1225 kcal/mol |
2.27094 kcal/mol |
6.98983 kcal/mol |
163 179@LB@ | |@LB@5'-GCU...CGCUU C C AACCA...AAC-3'@LB@ GCUGAUC CG CGAC@LB@ ||||||| || ||||@LB@ CGACUAG GC GCUG@LB@3'-UUU...AUGGC A GUCAA...GUU-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -19.1225 kcal/mol@LB@Unfolding Energy - mRNA 2.27094 kcal/mol@LB@Unfolding Energy - sRNA 6.98983 kcal/mol@LB@@LB@Position - mRNA 164 -- 178@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 48 -- 54@LB@ |
164 |
0.004161 |
0.1159 |
pa4420 |
N/A |
-11.64 |
0.078545 |
165 -- 187 |
40 -- 62 |
S-adenosyl-methyltransferase MraW |
|
_____________164______________________188\n_____________|________________________|\n5'-GAC...GGUGG_________AC__A__A_______UGAUC...GAA-3'\n______________GC_UGCCGG__GA_CU_CGCGACC\n______________||_|:||||__||_||_|||||||\n______________CG_AUGGCC__CU_GA_GCGCUGG\n3'-UUU...AGAGU__A______GA__A__________UCAAC...GUU-5'\n_____________|________________________|\n_____________63_______________________39\n |
181 -- 187 |
40 -- 46 |
-28.7872 kcal/mol |
5.30942 kcal/mol |
11.8411 kcal/mol |
164 188@LB@ | |@LB@5'-GAC...GGUGG AC A A UGAUC...GAA-3'@LB@ GC UGCCGG GA CU CGCGACC@LB@ || |:|||| || || |||||||@LB@ CG AUGGCC CU GA GCGCUGG@LB@3'-UUU...AGAGU A GA A UCAAC...GUU-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -11.64 kcal/mol@LB@Hybridization Energy -28.7872 kcal/mol@LB@Unfolding Energy - mRNA 5.30942 kcal/mol@LB@Unfolding Energy - sRNA 11.8411 kcal/mol@LB@@LB@Position - mRNA 165 -- 187@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 40 -- 46@LB@ |
58 |
0.0005047 |
0.0395 |
pa4066 |
N/A |
-14.62 |
0.013175 |
166 -- 238 |
44 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________165______________________________________________________________________________________239\n_____________|________________________________________________________________________________________|\n5'-AUC...AUGGC____C___CC_________CCC_______U__C__________AU______CUCCC__ACC_______C___________________CCUGC...UGA-3'\n______________CUGU_GAU__GCCU_AUGA___GGAGAUA_UC________CCG__GCUGCG_____UG___GUC_CUC____UGCUGGCU___UUCGC\n______________|:||_|||__||||_||||___|||||||_||________|||__:|||||_____||___|||_|||____|:|:||||___:||||\n______________GGCA_CUA__CGGA_UACU___CCUCUAU_AG________GGC__UGACGC_____AC___CAG_GAG____AUGGCCGA___GAGCG\n3'-UUU...UUUUU________AU____C______________U__ACUUCUCA__________________C_____A___UCGA________CUA_____CUGGU...GUU-5'\n_____________|________________________________________________________________________________________|\n_____________119______________________________________________________________________________________43\n |
227 -- 233 |
52 -- 58 |
-54.201 kcal/mol |
16.2747 kcal/mol |
23.3102 kcal/mol |
165 239@LB@ | |@LB@5'-AUC...AUGGC C CC CCC U C AU CUCCC ACC C CCUGC...UGA-3'@LB@ CUGU GAU GCCU AUGA GGAGAUA UC CCG GCUGCG UG GUC CUC UGCUGGCU UUCGC@LB@ |:|| ||| |||| |||| ||||||| || ||| :||||| || ||| ||| |:|:|||| :||||@LB@ GGCA CUA CGGA UACU CCUCUAU AG GGC UGACGC AC CAG GAG AUGGCCGA GAGCG@LB@3'-UUU...UUUUU AU C U ACUUCUCA C A UCGA CUA CUGGU...GUU-5'@LB@ | |@LB@ 119 43@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -54.201 kcal/mol@LB@Unfolding Energy - mRNA 16.2747 kcal/mol@LB@Unfolding Energy - sRNA 23.3102 kcal/mol@LB@@LB@Position - mRNA 166 -- 238@LB@Position - sRNA 44 -- 118@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 52 -- 58@LB@ |
7 |
9.272e-06 |
0.004211 |
pa1571 |
N/A |
-18.24 |
0.000884 |
168 -- 194 |
96 -- 121 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________167_________________________195\n_____________|___________________________|\n5'-CGG...UCCCU______CC___AAA_____________CGGGC...AGA-3'\n______________AGACUG__GAU___CCUGAUGAGGAGA\n______________|:||:|__|||___|||||||||||||\n______________UUUGGC__CUA___GGACUACUCCUCU\n3'-UUU...CAGUU______A____AUC_____________AUUAG...GUU-5'\n_____________|___________________________|\n_____________122_________________________95\n |
188 -- 194 |
96 -- 102 |
-30.1565 kcal/mol |
6.37386 kcal/mol |
5.54718 kcal/mol |
167 195@LB@ | |@LB@5'-CGG...UCCCU CC AAA CGGGC...AGA-3'@LB@ AGACUG GAU CCUGAUGAGGAGA@LB@ |:||:| ||| |||||||||||||@LB@ UUUGGC CUA GGACUACUCCUCU@LB@3'-UUU...CAGUU A AUC AUUAG...GUU-5'@LB@ | |@LB@ 122 95@LB@@LB@@LB@Energy -18.24 kcal/mol@LB@Hybridization Energy -30.1565 kcal/mol@LB@Unfolding Energy - mRNA 6.37386 kcal/mol@LB@Unfolding Energy - sRNA 5.54718 kcal/mol@LB@@LB@Position - mRNA 168 -- 194@LB@Position - sRNA 96 -- 121@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 96 -- 102@LB@ |
20 |
4.966e-05 |
0.01105 |
pa5388 |
N/A |
-18.86 |
0.000517 |
168 -- 251 |
37 -- 123 |
'Product name confidence: class 4:Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences.' |
pa3236 pa0030 pa5378 |
_____________167________________________________________________________________________________________252\n_____________|__________________________________________________________________________________________|\n5'-GGG...CGCAG______AAUCAA_____GCAC_______GACCGA______CGA________CCAG_____G____GC___CU__________________GGCGC...UGG-3'\n______________AAAAAC______UAGCC____GAGGGGA______UGAAGA___CGAUU_CG_______CU_GGCU__GCC__GCUGAUC_C_UGGCCAGU\n______________||||||______|||||____||||:||______||||||___|||:|_||_______||_:|||__:||__|||||||_|_:|:|||||\n______________UUUUUG______AUCGG____CUCCUCU______ACUUCU___GCUGA_GC_______GA_UCGA__UGG__CGACUAG_G_GCUGGUCA\n3'-UUU...CCCAG______GCACUA_____ACUA_______AUUAG_______CAG_____C__ACCCAGA__G____A____C________A_C________ACUCA...GUU-5'\n_____________|__________________________________________________________________________________________|\n_____________124________________________________________________________________________________________36\n |
245 -- 251 |
37 -- 43 |
-69.2339 kcal/mol |
26.9773 kcal/mol |
23.4067 kcal/mol |
167 252@LB@ | |@LB@5'-GGG...CGCAG AAUCAA GCAC GACCGA CGA CCAG G GC CU GGCGC...UGG-3'@LB@ AAAAAC UAGCC GAGGGGA UGAAGA CGAUU CG CU GGCU GCC GCUGAUC C UGGCCAGU@LB@ |||||| ||||| ||||:|| |||||| |||:| || || :||| :|| ||||||| | :|:|||||@LB@ UUUUUG AUCGG CUCCUCU ACUUCU GCUGA GC GA UCGA UGG CGACUAG G GCUGGUCA@LB@3'-UUU...CCCAG GCACUA ACUA AUUAG CAG C ACCCAGA G A C A C ACUCA...GUU-5'@LB@ | |@LB@ 124 36@LB@@LB@@LB@Energy -18.86 kcal/mol@LB@Hybridization Energy -69.2339 kcal/mol@LB@Unfolding Energy - mRNA 26.9773 kcal/mol@LB@Unfolding Energy - sRNA 23.4067 kcal/mol@LB@@LB@Position - mRNA 168 -- 251@LB@Position - sRNA 37 -- 123@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 37 -- 43@LB@ |
22 |
5.562e-05 |
0.01105 |
pa2264 |
N/A |
-16.58 |
0.003334 |
170 -- 193 |
98 -- 122 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______________________194\n_____________|_________________________|\n5'-CCU...AAGAC___________GAU__A________CCCCA...AUG-3'\n______________GAAACCGUGAU___CC_GA_GAGGA\n______________:||||||||||___||_||_|||||\n______________UUUUGGCACUA___GG_CU_CUCCU\n3'-UUU...CCAGU___________AUC__A__A_____CUAUU...GUU-5'\n_____________|_________________________|\n_____________123_______________________97\n |
174 -- 180 |
112 -- 118 |
-25.8581 kcal/mol |
7.03089 kcal/mol |
2.25226 kcal/mol |
169 194@LB@ | |@LB@5'-CCU...AAGAC GAU A CCCCA...AUG-3'@LB@ GAAACCGUGAU CC GA GAGGA@LB@ :|||||||||| || || |||||@LB@ UUUUGGCACUA GG CU CUCCU@LB@3'-UUU...CCAGU AUC A A CUAUU...GUU-5'@LB@ | |@LB@ 123 97@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -25.8581 kcal/mol@LB@Unfolding Energy - mRNA 7.03089 kcal/mol@LB@Unfolding Energy - sRNA 2.25226 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 98 -- 122@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 112 -- 118@LB@ |
49 |
0.0003265 |
0.03063 |
pa0541 |
N/A |
-11.15 |
0.101438 |
170 -- 235 |
53 -- 118 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169________________________________________________________________________236\n_____________|__________________________________________________________________________|\n5'-CUA...CGCUU_______CGAC_____AAAAA___CCUUGCCA_____CUGA___________UC_____GU_____________CGGCG...CGA-3'\n______________CCGUGAU____CCUGA_____GAG________UGAAG____AGUCC__CUGC____GUC_____GC_UGCUGGC\n______________|||||||____|||||_____|||________|||||____|||||__||||____|||_____||_|:|:|||\n______________GGCACUA____GGACU_____CUC________ACUUC____UCAGG__GACG____CAG_____CG_AUGGCCG\n3'-UUU...UUUUU_______AUC______ACUC____UAUUAG________________CU____CACC___AGAGU__A_______ACUAG...GUU-5'\n_____________|__________________________________________________________________________|\n_____________119________________________________________________________________________52\n |
229 -- 235 |
53 -- 59 |
-46.4373 kcal/mol |
16.5866 kcal/mol |
18.7053 kcal/mol |
169 236@LB@ | |@LB@5'-CUA...CGCUU CGAC AAAAA CCUUGCCA CUGA UC GU CGGCG...CGA-3'@LB@ CCGUGAU CCUGA GAG UGAAG AGUCC CUGC GUC GC UGCUGGC@LB@ ||||||| ||||| ||| ||||| ||||| |||| ||| || |:|:|||@LB@ GGCACUA GGACU CUC ACUUC UCAGG GACG CAG CG AUGGCCG@LB@3'-UUU...UUUUU AUC ACUC UAUUAG CU CACC AGAGU A ACUAG...GUU-5'@LB@ | |@LB@ 119 52@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -46.4373 kcal/mol@LB@Unfolding Energy - mRNA 16.5866 kcal/mol@LB@Unfolding Energy - sRNA 18.7053 kcal/mol@LB@@LB@Position - mRNA 170 -- 235@LB@Position - sRNA 53 -- 118@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 53 -- 59@LB@ |
93 |
0.001289 |
0.06355 |
pa4454 |
N/A |
-9.11 |
0.266760 |
170 -- 178 |
75 -- 83 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________169_______179\n_____________|_________|\n5'-CCG...UUCAU_________UUUGA...UGG-3'\n______________UCUGACUGC\n______________||:||||||\n______________AGGCUGACG\n3'-UUU...UUCUC_________CACCC...GUU-5'\n_____________|_________|\n_____________84________74\n |
172 -- 178 |
75 -- 81 |
-14.8179 kcal/mol |
1.6159 kcal/mol |
4.09544 kcal/mol |
169 179@LB@ | |@LB@5'-CCG...UUCAU UUUGA...UGG-3'@LB@ UCUGACUGC@LB@ ||:||||||@LB@ AGGCUGACG@LB@3'-UUU...UUCUC CACCC...GUU-5'@LB@ | |@LB@ 84 74@LB@@LB@@LB@Energy -9.11 kcal/mol@LB@Hybridization Energy -14.8179 kcal/mol@LB@Unfolding Energy - mRNA 1.6159 kcal/mol@LB@Unfolding Energy - sRNA 4.09544 kcal/mol@LB@@LB@Position - mRNA 170 -- 178@LB@Position - sRNA 75 -- 83@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 75 -- 81@LB@ |