| 114 |
0.001956 |
0.07883 |
pa1616 |
N/A |
-7.83 |
0.436748 |
16 -- 25 |
101 -- 110 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________15_________26\n_____________|__________|\n5'-GGC...ACGGC__________CUUUC...AGA-3'\n______________AGCCUGAUGG\n______________|||||||||:\n______________UCGGACUACU\n3'-UUU...ACUAA__________CCUCU...GUU-5'\n_____________|__________|\n_____________111________100\n |
19 -- 25 |
101 -- 107 |
-16.0192 kcal/mol |
6.07491 kcal/mol |
2.11196 kcal/mol |
15 26@LB@ | |@LB@5'-GGC...ACGGC CUUUC...AGA-3'@LB@ AGCCUGAUGG@LB@ |||||||||:@LB@ UCGGACUACU@LB@3'-UUU...ACUAA CCUCU...GUU-5'@LB@ | |@LB@ 111 100@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -16.0192 kcal/mol@LB@Unfolding Energy - mRNA 6.07491 kcal/mol@LB@Unfolding Energy - sRNA 2.11196 kcal/mol@LB@@LB@Position - mRNA 16 -- 25@LB@Position - sRNA 101 -- 110@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 44 |
0.0002709 |
0.02829 |
pa1340 |
N/A |
-13.31 |
0.030188 |
17 -- 34 |
101 -- 117 |
amino acid ABC transporter permease |
|
_____________16_________________35\n_____________|__________________|\n5'-AAC...GGCGU__C____C__________AGCUG...UCG-3'\n______________CG_UGAU_GGCCUGAUGG\n______________||_||||_:||||||||:\n______________GC_ACUA_UCGGACUACU\n3'-UUU...UUUUG_______A__________CCUCU...GUU-5'\n_____________|__________________|\n_____________118________________100\n |
28 -- 34 |
101 -- 107 |
-22.4618 kcal/mol |
6.92464 kcal/mol |
2.23144 kcal/mol |
16 35@LB@ | |@LB@5'-AAC...GGCGU C C AGCUG...UCG-3'@LB@ CG UGAU GGCCUGAUGG@LB@ || |||| :||||||||:@LB@ GC ACUA UCGGACUACU@LB@3'-UUU...UUUUG A CCUCU...GUU-5'@LB@ | |@LB@ 118 100@LB@@LB@@LB@Energy -13.31 kcal/mol@LB@Hybridization Energy -22.4618 kcal/mol@LB@Unfolding Energy - mRNA 6.92464 kcal/mol@LB@Unfolding Energy - sRNA 2.23144 kcal/mol@LB@@LB@Position - mRNA 17 -- 34@LB@Position - sRNA 101 -- 117@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 101 -- 107@LB@ |
| 55 |
0.0004353 |
0.03637 |
pa0086 |
N/A |
-16.64 |
0.003171 |
21 -- 37 |
100 -- 117 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________20_________________38\n_____________|__________________|\n5'-GGC...CAGAA____CA____________CCGGC...ACG-3'\n______________CGUG___GGCCUGAUGAG\n______________||||___:||||||||||\n______________GCAC___UCGGACUACUC\n3'-UUU...UUUUG____UAA___________CUCUA...GUU-5'\n_____________|__________________|\n_____________118________________99\n |
31 -- 37 |
100 -- 106 |
-24.5052 kcal/mol |
5.62761 kcal/mol |
2.23711 kcal/mol |
20 38@LB@ | |@LB@5'-GGC...CAGAA CA CCGGC...ACG-3'@LB@ CGUG GGCCUGAUGAG@LB@ |||| :||||||||||@LB@ GCAC UCGGACUACUC@LB@3'-UUU...UUUUG UAA CUCUA...GUU-5'@LB@ | |@LB@ 118 99@LB@@LB@@LB@Energy -16.64 kcal/mol@LB@Hybridization Energy -24.5052 kcal/mol@LB@Unfolding Energy - mRNA 5.62761 kcal/mol@LB@Unfolding Energy - sRNA 2.23711 kcal/mol@LB@@LB@Position - mRNA 21 -- 37@LB@Position - sRNA 100 -- 117@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 159 |
0.003984 |
0.115 |
pa2627 |
N/A |
-8.37 |
0.359084 |
22 -- 39 |
38 -- 59 |
high frequency lysogenization protein HflD |
|
_____________21_____________________40\n_____________|______________________|\n5'-CGC...UGCGC_______A______________GACUG...CCC-3'\n______________UACCGGC_GA____GCGACCAG\n______________|||||||_||____||||||||\n______________AUGGCCG_CU____CGCUGGUC\n3'-UUU...GUCGA_______A__AGAG________AACUC...GUU-5'\n_____________|______________________|\n_____________60_____________________37\n |
33 -- 39 |
38 -- 44 |
-28.3931 kcal/mol |
8.63241 kcal/mol |
11.3994 kcal/mol |
21 40@LB@ | |@LB@5'-CGC...UGCGC A GACUG...CCC-3'@LB@ UACCGGC GA GCGACCAG@LB@ ||||||| || ||||||||@LB@ AUGGCCG CU CGCUGGUC@LB@3'-UUU...GUCGA A AGAG AACUC...GUU-5'@LB@ | |@LB@ 60 37@LB@@LB@@LB@Energy -8.37 kcal/mol@LB@Hybridization Energy -28.3931 kcal/mol@LB@Unfolding Energy - mRNA 8.63241 kcal/mol@LB@Unfolding Energy - sRNA 11.3994 kcal/mol@LB@@LB@Position - mRNA 22 -- 39@LB@Position - sRNA 38 -- 59@LB@Position Seed - mRNA 33 -- 39@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 182 |
0.004765 |
0.1199 |
pa1522 |
N/A |
-10.50 |
0.140829 |
28 -- 41 |
106 -- 119 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________27_____________42\n_____________|______________|\n5'-AUC...AGGAC_______CC_____CGCCG...CCG-3'\n______________GCCGUGG__AGCCU\n______________:|||||:__|||||\n______________UGGCACU__UCGGA\n3'-UUU...GUUUU_______AA_____CUACU...GUU-5'\n_____________|______________|\n_____________120____________105\n |
28 -- 34 |
113 -- 119 |
-17.7026 kcal/mol |
4.96349 kcal/mol |
2.24014 kcal/mol |
27 42@LB@ | |@LB@5'-AUC...AGGAC CC CGCCG...CCG-3'@LB@ GCCGUGG AGCCU@LB@ :|||||: |||||@LB@ UGGCACU UCGGA@LB@3'-UUU...GUUUU AA CUACU...GUU-5'@LB@ | |@LB@ 120 105@LB@@LB@@LB@Energy -10.50 kcal/mol@LB@Hybridization Energy -17.7026 kcal/mol@LB@Unfolding Energy - mRNA 4.96349 kcal/mol@LB@Unfolding Energy - sRNA 2.24014 kcal/mol@LB@@LB@Position - mRNA 28 -- 41@LB@Position - sRNA 106 -- 119@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 113 -- 119@LB@ |
| 1 |
0 |
0 |
pa3775 |
N/A |
-6.65 |
0.627514 |
32 -- 38 |
50 -- 56 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________31______39\n_____________|_______|\n5'-CGA...CGGCA_______AGCCG...UGU-3'\n______________CGGCUGA\n______________|||||||\n______________GCCGACU\n3'-UUU...GAAUG_______AGAGC...GUU-5'\n_____________|_______|\n_____________57______49\n |
32 -- 38 |
50 -- 56 |
-12.177 kcal/mol |
0.20262 kcal/mol |
5.33178 kcal/mol |
31 39@LB@ | |@LB@5'-CGA...CGGCA AGCCG...UGU-3'@LB@ CGGCUGA@LB@ |||||||@LB@ GCCGACU@LB@3'-UUU...GAAUG AGAGC...GUU-5'@LB@ | |@LB@ 57 49@LB@@LB@@LB@Energy -6.65 kcal/mol@LB@Hybridization Energy -12.177 kcal/mol@LB@Unfolding Energy - mRNA 0.20262 kcal/mol@LB@Unfolding Energy - sRNA 5.33178 kcal/mol@LB@@LB@Position - mRNA 32 -- 38@LB@Position - sRNA 50 -- 56@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 76 |
0.0008254 |
0.04991 |
pa0029 |
N/A |
-13.54 |
0.026240 |
35 -- 51 |
100 -- 123 |
sulfate transporter |
|
_____________34_______________________52\n_____________|________________________|\n5'-GCU...ACAUG________________________CGACG...UGG-3'\n______________GAGAACC_______GCCUGAUGAG\n______________:|:||||_______||||||||||\n______________UUUUUGG_______CGGACUACUC\n3'-UUU...CCCAG_______CACUAAU__________CUCUA...GUU-5'\n_____________|________________________|\n_____________124______________________99\n |
45 -- 51 |
100 -- 106 |
-21.4793 kcal/mol |
5.69273 kcal/mol |
2.24995 kcal/mol |
34 52@LB@ | |@LB@5'-GCU...ACAUG CGACG...UGG-3'@LB@ GAGAACC GCCUGAUGAG@LB@ :|:|||| ||||||||||@LB@ UUUUUGG CGGACUACUC@LB@3'-UUU...CCCAG CACUAAU CUCUA...GUU-5'@LB@ | |@LB@ 124 99@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -21.4793 kcal/mol@LB@Unfolding Energy - mRNA 5.69273 kcal/mol@LB@Unfolding Energy - sRNA 2.24995 kcal/mol@LB@@LB@Position - mRNA 35 -- 51@LB@Position - sRNA 100 -- 123@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 100 -- 106@LB@ |
| 111 |
0.001873 |
0.07755 |
pa4347 |
N/A |
-11.13 |
0.102611 |
35 -- 49 |
91 -- 105 |
'Product name confidence: class 4 (Homologs of previously reported genes of unknown function or no similarity to any previously reported sequences)' |
|
_____________34______________50\n_____________|_______________|\n5'-CUG...ACAUG____U__________GUGCC...UCC-3'\n______________GAUG_GGAGAUGAUC\n______________||||_||||||:|||\n______________CUAC_CCUCUAUUAG\n3'-UUU...UCGGA____U__________ACUUC...GUU-5'\n_____________|_______________|\n_____________106_____________90\n |
41 -- 47 |
93 -- 99 |
-20.2492 kcal/mol |
4.9637 kcal/mol |
4.15885 kcal/mol |
34 50@LB@ | |@LB@5'-CUG...ACAUG U GUGCC...UCC-3'@LB@ GAUG GGAGAUGAUC@LB@ |||| ||||||:|||@LB@ CUAC CCUCUAUUAG@LB@3'-UUU...UCGGA U ACUUC...GUU-5'@LB@ | |@LB@ 106 90@LB@@LB@@LB@Energy -11.13 kcal/mol@LB@Hybridization Energy -20.2492 kcal/mol@LB@Unfolding Energy - mRNA 4.9637 kcal/mol@LB@Unfolding Energy - sRNA 4.15885 kcal/mol@LB@@LB@Position - mRNA 35 -- 49@LB@Position - sRNA 91 -- 105@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 93 -- 99@LB@ |
| 42 |
0.000247 |
0.02703 |
pa4550 |
fimU |
-17.01 |
0.002407 |
39 -- 109 |
35 -- 119 |
type 4 fimbrial biogenesis protein FimU |
pa4549 |
_____________38______________________________________________________________________________________110\n_____________|_______________________________________________________________________________________|\n5'-CCU...UCCGU____C__GC____A__________ACCG_______AA___________A____AUG____ACUU____A_____A____________UCCUG...UCA-3'\n______________ACCG_GA___GCC_____GGGAGA______GGAGA_________CGUG_G_CU___CAGC____CCGG_UGAUC_UG_GACCAGUUG\n______________||||_||___|||_____:|||||______|:|||_________||||_|_||___||||____||||_|||||_:|_|||||||||\n______________UGGC_CU___CGG_____UCCUCU______CUUCU_________GCAC_C_GA___GUCG____GGCC_ACUAG_GC_CUGGUCAAC\n3'-UUU...GUUUU____A__AAU___ACUAC______AUUAGA_____CAGGCUGAC____C_A__GA_____AAU_____G_____A__G_________UCACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________34\n |
103 -- 109 |
35 -- 41 |
-60.4739 kcal/mol |
20.069 kcal/mol |
23.4074 kcal/mol |
38 110@LB@ | |@LB@5'-CCU...UCCGU C GC A ACCG AA A AUG ACUU A A UCCUG...UCA-3'@LB@ ACCG GA GCC GGGAGA GGAGA CGUG G CU CAGC CCGG UGAUC UG GACCAGUUG@LB@ |||| || ||| :||||| |:||| |||| | || |||| |||| ||||| :| |||||||||@LB@ UGGC CU CGG UCCUCU CUUCU GCAC C GA GUCG GGCC ACUAG GC CUGGUCAAC@LB@3'-UUU...GUUUU A AAU ACUAC AUUAGA CAGGCUGAC C A GA AAU G A G UCACU...GUU-5'@LB@ | |@LB@ 120 34@LB@@LB@@LB@Energy -17.01 kcal/mol@LB@Hybridization Energy -60.4739 kcal/mol@LB@Unfolding Energy - mRNA 20.069 kcal/mol@LB@Unfolding Energy - sRNA 23.4074 kcal/mol@LB@@LB@Position - mRNA 39 -- 109@LB@Position - sRNA 35 -- 119@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 189 |
0.005044 |
0.1227 |
pa4284 |
recB |
-12.92 |
0.038081 |
40 -- 56 |
70 -- 89 |
exodeoxyribonuclease V subunit beta |
|
_____________39___________________57\n_____________|____________________|\n5'-CCC...ACGAG____________A_______GGGCG...UCA-3'\n______________GGAGGGUUCGGC____UGGG\n______________|:||:||:||:|____||||\n______________CUUCUCAGGCUG____ACCC\n3'-UUU...UUAGA____________ACGC____AGAGA...GUU-5'\n_____________|____________________|\n_____________90___________________69\n |
45 -- 51 |
78 -- 84 |
-22.2148 kcal/mol |
3.43278 kcal/mol |
5.86471 kcal/mol |
39 57@LB@ | |@LB@5'-CCC...ACGAG A GGGCG...UCA-3'@LB@ GGAGGGUUCGGC UGGG@LB@ |:||:||:||:| ||||@LB@ CUUCUCAGGCUG ACCC@LB@3'-UUU...UUAGA ACGC AGAGA...GUU-5'@LB@ | |@LB@ 90 69@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -22.2148 kcal/mol@LB@Unfolding Energy - mRNA 3.43278 kcal/mol@LB@Unfolding Energy - sRNA 5.86471 kcal/mol@LB@@LB@Position - mRNA 40 -- 56@LB@Position - sRNA 70 -- 89@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 78 -- 84@LB@ |
