| 54 |
0.001244 |
0.07744 |
b1874 |
cutC |
-11.77 |
0.073856 |
3 -- 15 |
22 -- 35 |
copper homeostasis protein |
|
_____________2______________16\n_____________|______________|\n_________5'-CC______________GCUUU...AGG-3'\n______________GUGC_GCUGGCAUU\n______________||:|_|||:|||||\n______________CAUG_CGAUCGUAA\n3'-UUU...AGGAC____U_________AAUAC...UCG-5'\n_____________|______________|\n_____________36_____________21\n |
9 -- 15 |
22 -- 28 |
-17.4456 kcal/mol |
4.24515 kcal/mol |
1.43095 kcal/mol |
2 16@LB@ | |@LB@ 5'-CC GCUUU...AGG-3'@LB@ GUGC GCUGGCAUU@LB@ ||:| |||:|||||@LB@ CAUG CGAUCGUAA@LB@3'-UUU...AGGAC U AAUAC...UCG-5'@LB@ | |@LB@ 36 21@LB@@LB@@LB@Energy -11.77 kcal/mol@LB@Hybridization Energy -17.4456 kcal/mol@LB@Unfolding Energy - mRNA 4.24515 kcal/mol@LB@Unfolding Energy - sRNA 1.43095 kcal/mol@LB@@LB@Position - mRNA 3 -- 15@LB@Position - sRNA 22 -- 35@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 188 |
0.01085 |
0.1919 |
b1878 |
flhE |
-11.23 |
0.096033 |
252 -- 283 |
16 -- 51 |
proton seal during flagellar secretion |
|
_____________251__________________________________284\n_____________|____________________________________|\n5'-CGU...CCGCC__________A__G___CA____A____GUG_____AAUUA...AUC-3'\n______________GGGGAGG_GG__U_UGG___GGC_AGUA___UA_GG\n______________::|||||_||__:_|||___:||_||:|___||_||\n______________UUCCUCC_CC__G_ACC___UCG_UCGU___AU_CC\n3'-UUU...UCCGA_______A__AA_G___AUG___A____AAA__A__CAAUA...UCG-5'\n_____________|____________________________________|\n_____________52___________________________________15\n |
252 -- 258 |
45 -- 51 |
-25.2373 kcal/mol |
9.34808 kcal/mol |
4.65624 kcal/mol |
251 284@LB@ | |@LB@5'-CGU...CCGCC A G CA A GUG AAUUA...AUC-3'@LB@ GGGGAGG GG U UGG GGC AGUA UA GG@LB@ ::||||| || : ||| :|| ||:| || ||@LB@ UUCCUCC CC G ACC UCG UCGU AU CC@LB@3'-UUU...UCCGA A AA G AUG A AAA A CAAUA...UCG-5'@LB@ | |@LB@ 52 15@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -25.2373 kcal/mol@LB@Unfolding Energy - mRNA 9.34808 kcal/mol@LB@Unfolding Energy - sRNA 4.65624 kcal/mol@LB@@LB@Position - mRNA 252 -- 283@LB@Position - sRNA 16 -- 51@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 60 |
0.001479 |
0.08283 |
b1886 |
tar |
-8.65 |
0.283085 |
258 -- 290 |
4 -- 38 |
methyl-accepting chemotaxis protein II |
|
_____________257__________________________________291\n_____________|____________________________________|\n5'-UGC...UCGCA___U______________CC___CAGUC________UCUUC...UUC-3'\n______________CUG_UACAGCU__UAUUU___GG_____UGUUUUUU\n______________|||_|||||||__:||||___||_____|||||||:\n______________GAC_AUGUCGA__GUAAA___CC_____ACAAAAAG\n3'-UUU...CCAAG___C_______UC_____AUA__CAAU_________UCG-5'\n_____________|____________________________________|\n_____________39___________________________________3\n |
284 -- 290 |
4 -- 10 |
-19.1357 kcal/mol |
5.94997 kcal/mol |
4.53981 kcal/mol |
257 291@LB@ | |@LB@5'-UGC...UCGCA U CC CAGUC UCUUC...UUC-3'@LB@ CUG UACAGCU UAUUU GG UGUUUUUU@LB@ ||| ||||||| :|||| || |||||||:@LB@ GAC AUGUCGA GUAAA CC ACAAAAAG@LB@3'-UUU...CCAAG C UC AUA CAAU UCG-5'@LB@ | |@LB@ 39 3@LB@@LB@@LB@Energy -8.65 kcal/mol@LB@Hybridization Energy -19.1357 kcal/mol@LB@Unfolding Energy - mRNA 5.94997 kcal/mol@LB@Unfolding Energy - sRNA 4.53981 kcal/mol@LB@@LB@Position - mRNA 258 -- 290@LB@Position - sRNA 4 -- 38@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 10 |
2.916e-05 |
0.0098 |
b1890 |
motA |
-14.10 |
0.019983 |
224 -- 242 |
28 -- 46 |
proton conductor component of flagella motor |
|
_____________223_________________243\n_____________|___________________|\n5'-GAC...UACCU___U_____C_________UUCGG...AAC-3'\n______________GGU_GUUCU_GGUACAGUU\n______________|||_||||:_|||||||:|\n______________CCA_CAAGG_CCAUGUCGA\n3'-UUU...UUCCU___C_____A_________UCGUA...UCG-5'\n_____________|___________________|\n_____________47__________________27\n |
236 -- 242 |
28 -- 34 |
-23.9025 kcal/mol |
5.49413 kcal/mol |
4.3041 kcal/mol |
223 243@LB@ | |@LB@5'-GAC...UACCU U C UUCGG...AAC-3'@LB@ GGU GUUCU GGUACAGUU@LB@ ||| ||||: |||||||:|@LB@ CCA CAAGG CCAUGUCGA@LB@3'-UUU...UUCCU C A UCGUA...UCG-5'@LB@ | |@LB@ 47 27@LB@@LB@@LB@Energy -14.10 kcal/mol@LB@Hybridization Energy -23.9025 kcal/mol@LB@Unfolding Energy - mRNA 5.49413 kcal/mol@LB@Unfolding Energy - sRNA 4.3041 kcal/mol@LB@@LB@Position - mRNA 224 -- 242@LB@Position - sRNA 28 -- 46@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 61 |
0.001594 |
0.08781 |
b1905 |
ftnA |
-13.68 |
0.025904 |
280 -- 298 |
27 -- 44 |
ferritin iron storage protein (cytoplasmic) |
|
_____________279_________________299\n_____________|___________________|\n5'-CAU...GCAAA__A_CG_____________UC-3'\n______________UG_G__CCUGGUGCAGCUA\n______________||_|__||||||:||||||\n______________AC_C__GGACCAUGUCGAU\n3'-UUU...CCUCC____AA_____________CGUAA...UCG-5'\n_____________|___________________|\n_____________45__________________26\n |
292 -- 298 |
27 -- 33 |
-25.294 kcal/mol |
7.30746 kcal/mol |
4.30747 kcal/mol |
279 299@LB@ | |@LB@5'-CAU...GCAAA A CG UC-3'@LB@ UG G CCUGGUGCAGCUA@LB@ || | ||||||:||||||@LB@ AC C GGACCAUGUCGAU@LB@3'-UUU...CCUCC AA CGUAA...UCG-5'@LB@ | |@LB@ 45 26@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -25.294 kcal/mol@LB@Unfolding Energy - mRNA 7.30746 kcal/mol@LB@Unfolding Energy - sRNA 4.30747 kcal/mol@LB@@LB@Position - mRNA 280 -- 298@LB@Position - sRNA 27 -- 44@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 140 |
0.006493 |
0.1559 |
b1916 |
sdiA |
-12.48 |
0.051059 |
182 -- 224 |
1 -- 50 |
quorum-sensing transcriptional activator |
|
_____________181_________________________________________________225\n_____________|___________________________________________________|\n5'-UGU...CUCUC_____C_____G_____U______U___GGAUAA___AU____________UGGCG...AGG-3'\n______________AGGGG___GUU_C_GGU_UA_CUA_GCA_______GG_____UUUUUCAGC\n______________|||:|___|||_|_|||_:|_|||_|||_______||_____|||||||||\n______________UCCUC___CAA_G_CCA_GU_GAU_CGU_______CC_____AAAAAGUCG\n3'-UUU...CCGAU_____CAC___G_A___U__C_______AAAAUAC__AAUAC_________-5'\n_____________|__________________________________________________|\n_____________51_________________________________________________1\n |
218 -- 224 |
1 -- 7 |
-26.3158 kcal/mol |
9.17132 kcal/mol |
4.6634 kcal/mol |
181 225@LB@ | |@LB@5'-UGU...CUCUC C G U U GGAUAA AU UGGCG...AGG-3'@LB@ AGGGG GUU C GGU UA CUA GCA GG UUUUUCAGC@LB@ |||:| ||| | ||| :| ||| ||| || |||||||||@LB@ UCCUC CAA G CCA GU GAU CGU CC AAAAAGUCG@LB@3'-UUU...CCGAU CAC G A U C AAAAUAC AAUAC -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -26.3158 kcal/mol@LB@Unfolding Energy - mRNA 9.17132 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 182 -- 224@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 5 |
6.68e-06 |
0.00395 |
b1918 |
yecS |
-16.73 |
0.003069 |
259 -- 299 |
1 -- 36 |
ABC family putative inner membrane permease |
|
_____________258________________________________________300\n_____________|__________________________________________|\n5'-GGC...GGCUG______C_______ACUCAG___C__C_GC____________U-3'\n______________GGUAUA_GCU_GCA______UAU_GG_G__AUGUUUUUUGGC\n______________||||:|_|||_|||______|||_||_|__||||||||::||\n______________CCAUGU_CGA_CGU______AUA_CC_C__UACAAAAAGUCG\n3'-UUU...AAGGA__________U___AAA___________AA____________-5'\n_____________|_________________________________________|\n_____________37________________________________________1\n |
293 -- 299 |
1 -- 7 |
-28.0078 kcal/mol |
9.77847 kcal/mol |
1.49509 kcal/mol |
258 300@LB@ | |@LB@5'-GGC...GGCUG C ACUCAG C C GC U-3'@LB@ GGUAUA GCU GCA UAU GG G AUGUUUUUUGGC@LB@ ||||:| ||| ||| ||| || | ||||||||::||@LB@ CCAUGU CGA CGU AUA CC C UACAAAAAGUCG@LB@3'-UUU...AAGGA U AAA AA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -16.73 kcal/mol@LB@Hybridization Energy -28.0078 kcal/mol@LB@Unfolding Energy - mRNA 9.77847 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 259 -- 299@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 141 |
0.006623 |
0.1579 |
b1992 |
cobS |
-16.13 |
0.004945 |
167 -- 192 |
24 -- 49 |
cobalamin synthase |
|
_____________166_________________________193\n_____________|___________________________|\n5'-GAG...AGUAU__CU_________G_____UGG_____AAAAU...GUA-3'\n______________GG__GGUGGUUUC_GGUAU____AGUA\n______________||__|||||||:|_||||:____||:|\n______________CC__CCACCAAGG_CCAUG____UCGU\n3'-UUU...CGAUU__U__________A_____UCGA____AAAAU...UCG-5'\n_____________|___________________________|\n_____________50__________________________23\n |
173 -- 179 |
38 -- 44 |
-26.3933 kcal/mol |
5.70356 kcal/mol |
4.5591 kcal/mol |
166 193@LB@ | |@LB@5'-GAG...AGUAU CU G UGG AAAAU...GUA-3'@LB@ GG GGUGGUUUC GGUAU AGUA@LB@ || |||||||:| ||||: ||:|@LB@ CC CCACCAAGG CCAUG UCGU@LB@3'-UUU...CGAUU U A UCGA AAAAU...UCG-5'@LB@ | |@LB@ 50 23@LB@@LB@@LB@Energy -16.13 kcal/mol@LB@Hybridization Energy -26.3933 kcal/mol@LB@Unfolding Energy - mRNA 5.70356 kcal/mol@LB@Unfolding Energy - sRNA 4.5591 kcal/mol@LB@@LB@Position - mRNA 167 -- 192@LB@Position - sRNA 24 -- 49@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 175 |
0.009651 |
0.1848 |
b2016 |
yeeZ |
-14.25 |
0.018278 |
222 -- 265 |
1 -- 50 |
putative epimerase |
|
_____________221_______________________________________________________266\n_____________|_________________________________________________________|\n5'-ACC...UUGUC___UUA________A____CA___C______________________CAC_______GCGAG...CAC-3'\n______________GGG___GGGUGGUU___GG__UGC_GCUGGCG___________AUGU___UUUCAGC\n______________:||___:|||||||___||__|:|_|||:||:___________||||___|||||||\n______________UCC___UCCACCAA___CC__AUG_CGAUCGU___________UACA___AAAGUCG\n3'-UUU...CCGAU______________GGA_______U_______AAAAUACCCAA____A_________-5'\n_____________|________________________________________________________|\n_____________51_______________________________________________________1\n |
259 -- 265 |
1 -- 7 |
-34.6896 kcal/mol |
15.7797 kcal/mol |
4.6634 kcal/mol |
221 266@LB@ | |@LB@5'-ACC...UUGUC UUA A CA C CAC GCGAG...CAC-3'@LB@ GGG GGGUGGUU GG UGC GCUGGCG AUGU UUUCAGC@LB@ :|| :||||||| || |:| |||:||: |||| |||||||@LB@ UCC UCCACCAA CC AUG CGAUCGU UACA AAAGUCG@LB@3'-UUU...CCGAU GGA U AAAAUACCCAA A -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -14.25 kcal/mol@LB@Hybridization Energy -34.6896 kcal/mol@LB@Unfolding Energy - mRNA 15.7797 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 222 -- 265@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 98 |
0.003416 |
0.1172 |
b2024 |
hisA |
-13.42 |
0.030138 |
147 -- 168 |
25 -- 49 |
N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase |
|
_____________146_______________________169\n_____________|_________________________|\n5'-CAG...CACCC____C_____________C______GCUAA...CGC-3'\n______________GGAG___GUU_CUGGUGC_GCUGGU\n______________||||___|||_|||||:|_|||:|:\n______________CCUC___CAA_GACCAUG_CGAUCG\n3'-UUU...CGAUU____CAC___G_______U______UAAAA...UCG-5'\n_____________|_________________________|\n_____________50________________________24\n |
155 -- 161 |
32 -- 38 |
-27.4512 kcal/mol |
9.47045 kcal/mol |
4.5577 kcal/mol |
146 169@LB@ | |@LB@5'-CAG...CACCC C C GCUAA...CGC-3'@LB@ GGAG GUU CUGGUGC GCUGGU@LB@ |||| ||| |||||:| |||:|:@LB@ CCUC CAA GACCAUG CGAUCG@LB@3'-UUU...CGAUU CAC G U UAAAA...UCG-5'@LB@ | |@LB@ 50 24@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -27.4512 kcal/mol@LB@Unfolding Energy - mRNA 9.47045 kcal/mol@LB@Unfolding Energy - sRNA 4.5577 kcal/mol@LB@@LB@Position - mRNA 147 -- 168@LB@Position - sRNA 25 -- 49@LB@Position Seed - mRNA 155 -- 161@LB@Position Seed - sRNA 32 -- 38@LB@ |
