35 |
0.0006725 |
0.06313 |
b3455 |
livG |
-12.92 |
0.040223 |
97 -- 112 |
32 -- 46 |
branched-chain amino acid ABC transporter ATPase |
|
_____________96_______________113\n_____________|________________|\n5'-AUG...UGCUC________GA______UGAUG...UCG-3'\n______________GGUGGUUU__UGGUGC\n______________|||||||:__||||:|\n______________CCACCAAG__ACCAUG\n3'-UUU...UUCCU________G_______UCGAU...UCG-5'\n_____________|________________|\n_____________47_______________31\n |
98 -- 104 |
39 -- 45 |
-21.8288 kcal/mol |
5.65514 kcal/mol |
3.25632 kcal/mol |
96 113@LB@ | |@LB@5'-AUG...UGCUC GA UGAUG...UCG-3'@LB@ GGUGGUUU UGGUGC@LB@ |||||||: ||||:|@LB@ CCACCAAG ACCAUG@LB@3'-UUU...UUCCU G UCGAU...UCG-5'@LB@ | |@LB@ 47 31@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -21.8288 kcal/mol@LB@Unfolding Energy - mRNA 5.65514 kcal/mol@LB@Unfolding Energy - sRNA 3.25632 kcal/mol@LB@@LB@Position - mRNA 97 -- 112@LB@Position - sRNA 32 -- 46@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 39 -- 45@LB@ |
32 |
0.0005297 |
0.05563 |
b3456 |
livM |
-14.95 |
0.011565 |
245 -- 274 |
15 -- 42 |
branched-chain amino acid ABC transporter permease |
|
_____________244____________________________275\n_____________|______________________________|\n5'-GCC...GCGAU______U____U___G_____C________CGUGC...CCA-3'\n______________GUUCUU_GUGC_GGC_GGCGU_UUUAUGGG\n______________||||:|_||:|_:||_:||:|_||||||||\n______________CAAGGA_CAUG_UCG_UCGUA_AAAUACCC\n3'-UUU...UCCAC______C________A______________AAUAC...UCG-5'\n_____________|______________________________|\n_____________43_____________________________14\n |
268 -- 274 |
15 -- 21 |
-29.6256 kcal/mol |
10.1077 kcal/mol |
4.57031 kcal/mol |
244 275@LB@ | |@LB@5'-GCC...GCGAU U U G C CGUGC...CCA-3'@LB@ GUUCUU GUGC GGC GGCGU UUUAUGGG@LB@ ||||:| ||:| :|| :||:| ||||||||@LB@ CAAGGA CAUG UCG UCGUA AAAUACCC@LB@3'-UUU...UCCAC C A AAUAC...UCG-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -14.95 kcal/mol@LB@Hybridization Energy -29.6256 kcal/mol@LB@Unfolding Energy - mRNA 10.1077 kcal/mol@LB@Unfolding Energy - sRNA 4.57031 kcal/mol@LB@@LB@Position - mRNA 245 -- 274@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 15 -- 21@LB@ |
133 |
0.005817 |
0.146 |
b3461 |
rpoH |
-7.67 |
0.391921 |
235 -- 243 |
24 -- 32 |
RNA polymerase sigma 32 (sigma H) factor |
|
_____________234_______244\n_____________|_________|\n5'-GGA...AGCCC_________ACCUG...AGG-3'\n______________CAGUUGGCA\n______________|||:|:|||\n______________GUCGAUCGU\n3'-UUU...ACCAU_________AAAAU...UCG-5'\n_____________|_________|\n_____________33________23\n |
237 -- 243 |
24 -- 30 |
-13.04 kcal/mol |
3.94405 kcal/mol |
1.424 kcal/mol |
234 244@LB@ | |@LB@5'-GGA...AGCCC ACCUG...AGG-3'@LB@ CAGUUGGCA@LB@ |||:|:|||@LB@ GUCGAUCGU@LB@3'-UUU...ACCAU AAAAU...UCG-5'@LB@ | |@LB@ 33 23@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -13.04 kcal/mol@LB@Unfolding Energy - mRNA 3.94405 kcal/mol@LB@Unfolding Energy - sRNA 1.424 kcal/mol@LB@@LB@Position - mRNA 235 -- 243@LB@Position - sRNA 24 -- 32@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 24 -- 30@LB@ |
149 |
0.00724 |
0.1633 |
b3494 |
uspB |
-9.24 |
0.227320 |
190 -- 228 |
15 -- 51 |
universal stress (ethanol tolerance) protein B |
|
_____________189_____________________________________229\n_____________|_______________________________________|\n5'-AAU...UCGCC_______A___AUGAUAA___C_GUC_____AUUU____CUUUA...UGC-3'\n______________GGGGAGG_GGU_______GCA_C___GCAUU____UGGG\n______________::|||||_|||_______:||_|___|||||____||||\n______________UUCCUCC_CCA_______UGU_G___CGUAA____ACCC\n3'-UUU...UCCGA_______A___AGGACCA___C_AU______AAU_____AAUAC...UCG-5'\n_____________|_______________________________________|\n_____________52______________________________________14\n |
190 -- 196 |
45 -- 51 |
-24.8188 kcal/mol |
10.9257 kcal/mol |
4.65724 kcal/mol |
189 229@LB@ | |@LB@5'-AAU...UCGCC A AUGAUAA C GUC AUUU CUUUA...UGC-3'@LB@ GGGGAGG GGU GCA C GCAUU UGGG@LB@ ::||||| ||| :|| | ||||| ||||@LB@ UUCCUCC CCA UGU G CGUAA ACCC@LB@3'-UUU...UCCGA A AGGACCA C AU AAU AAUAC...UCG-5'@LB@ | |@LB@ 52 14@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -24.8188 kcal/mol@LB@Unfolding Energy - mRNA 10.9257 kcal/mol@LB@Unfolding Energy - sRNA 4.65724 kcal/mol@LB@@LB@Position - mRNA 190 -- 228@LB@Position - sRNA 15 -- 51@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 45 -- 51@LB@ |
173 |
0.009278 |
0.1803 |
b3495 |
uspA |
-10.68 |
0.124344 |
253 -- 279 |
16 -- 40 |
universal stress global response regulator |
|
_____________252_________________________280\n_____________|___________________________|\n5'-GUC...CAAAG________G__AA____GUCUC_____CUCGC...AAG-3'\n______________UUCUGGUA_AG__AGCA_____UAUGG\n______________|:||||||_||__||||_____|||||\n______________AGGACCAU_UC__UCGU_____AUACC\n3'-UUU...CACCA________G__GA____AAA_______CAAUA...UCG-5'\n_____________|___________________________|\n_____________41__________________________15\n |
254 -- 260 |
33 -- 39 |
-24.2729 kcal/mol |
9.02768 kcal/mol |
4.56874 kcal/mol |
252 280@LB@ | |@LB@5'-GUC...CAAAG G AA GUCUC CUCGC...AAG-3'@LB@ UUCUGGUA AG AGCA UAUGG@LB@ |:|||||| || |||| |||||@LB@ AGGACCAU UC UCGU AUACC@LB@3'-UUU...CACCA G GA AAA CAAUA...UCG-5'@LB@ | |@LB@ 41 15@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -24.2729 kcal/mol@LB@Unfolding Energy - mRNA 9.02768 kcal/mol@LB@Unfolding Energy - sRNA 4.56874 kcal/mol@LB@@LB@Position - mRNA 253 -- 279@LB@Position - sRNA 16 -- 40@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 33 -- 39@LB@ |
17 |
0.0001135 |
0.02244 |
b3531 |
bcsZ |
-11.80 |
0.072553 |
125 -- 136 |
14 -- 30 |
endo-1 4-D-glucanase |
|
_____________124_______________137\n_____________|_________________|\n5'-UCA...AUAUU_________________ACUGU...AGG-3'\n______________GCUGGCA_____UGGGU\n______________|||:|||_____|||||\n______________CGAUCGU_____ACCCA\n3'-UUU...CAUGU_______AAAAU_____AUACA...UCG-5'\n_____________|_________________|\n_____________31________________13\n |
125 -- 131 |
24 -- 30 |
-17.2227 kcal/mol |
4.01076 kcal/mol |
1.40705 kcal/mol |
124 137@LB@ | |@LB@5'-UCA...AUAUU ACUGU...AGG-3'@LB@ GCUGGCA UGGGU@LB@ |||:||| |||||@LB@ CGAUCGU ACCCA@LB@3'-UUU...CAUGU AAAAU AUACA...UCG-5'@LB@ | |@LB@ 31 13@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -17.2227 kcal/mol@LB@Unfolding Energy - mRNA 4.01076 kcal/mol@LB@Unfolding Energy - sRNA 1.40705 kcal/mol@LB@@LB@Position - mRNA 125 -- 136@LB@Position - sRNA 14 -- 30@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 24 -- 30@LB@ |
193 |
0.01107 |
0.1919 |
b3532 |
bcsB |
-10.24 |
0.150531 |
226 -- 241 |
15 -- 35 |
regulator of cellulose synthase cyclic di-GMP binding |
|
_____________225___________________242\n_____________|_____________________|\n5'-AAG...GAUUU_______G_____________GAUGA...UCA-3'\n______________GUGCAGU__GC____UAUGGG\n______________||:|||:__||____||||||\n______________CAUGUCG__CG____AUACCC\n3'-UUU...AGGAC_______AU__UAAA______AAUAC...UCG-5'\n_____________|_____________________|\n_____________36____________________14\n |
226 -- 232 |
29 -- 35 |
-18.7324 kcal/mol |
7.03896 kcal/mol |
1.4496 kcal/mol |
225 242@LB@ | |@LB@5'-AAG...GAUUU G GAUGA...UCA-3'@LB@ GUGCAGU GC UAUGGG@LB@ ||:|||: || ||||||@LB@ CAUGUCG CG AUACCC@LB@3'-UUU...AGGAC AU UAAA AAUAC...UCG-5'@LB@ | |@LB@ 36 14@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -18.7324 kcal/mol@LB@Unfolding Energy - mRNA 7.03896 kcal/mol@LB@Unfolding Energy - sRNA 1.4496 kcal/mol@LB@@LB@Position - mRNA 226 -- 241@LB@Position - sRNA 15 -- 35@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 29 -- 35@LB@ |
65 |
0.001744 |
0.09016 |
b3541 |
dppD |
-12.71 |
0.044996 |
114 -- 148 |
14 -- 40 |
dipeptide/heme ABC transporter ATPas |
|
_____________113_________________________________149\n_____________|___________________________________|\n5'-UUU...GGCGA_____CUG___GU__________AACCUG______GACGG...GCG-3'\n______________UCCUG___ACG__GCUGGCAUUU______AUGGGU\n______________|||||___||:__|||:||||||______||||||\n______________AGGAC___UGU__CGAUCGUAAA______UACCCA\n3'-UUU...CACCA_____CA________________A___________AUACA...UCG-5'\n_____________|___________________________________|\n_____________41__________________________________13\n |
130 -- 136 |
21 -- 27 |
-26.5011 kcal/mol |
9.21659 kcal/mol |
4.57003 kcal/mol |
113 149@LB@ | |@LB@5'-UUU...GGCGA CUG GU AACCUG GACGG...GCG-3'@LB@ UCCUG ACG GCUGGCAUUU AUGGGU@LB@ ||||| ||: |||:|||||| ||||||@LB@ AGGAC UGU CGAUCGUAAA UACCCA@LB@3'-UUU...CACCA CA A AUACA...UCG-5'@LB@ | |@LB@ 41 13@LB@@LB@@LB@Energy -12.71 kcal/mol@LB@Hybridization Energy -26.5011 kcal/mol@LB@Unfolding Energy - mRNA 9.21659 kcal/mol@LB@Unfolding Energy - sRNA 4.57003 kcal/mol@LB@@LB@Position - mRNA 114 -- 148@LB@Position - sRNA 14 -- 40@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 21 -- 27@LB@ |
50 |
0.001175 |
0.07744 |
b3543 |
dppB |
-14.13 |
0.019609 |
196 -- 210 |
1 -- 17 |
dipeptide/heme ABC transporter permease |
|
_____________195_______________211\n_____________|_________________|\n5'-CGG...AAUCC__________G______UUAUU...AUC-3'\n______________GGGUUAUGUU___CAGU\n______________||||||||||___|||:\n______________CCCAAUACAA___GUCG\n3'-UUU...AAAUA__________AAA____-5'\n_____________|________________|\n_____________18_______________1\n |
199 -- 205 |
8 -- 14 |
-17.9134 kcal/mol |
2.84721 kcal/mol |
0.931609 kcal/mol |
195 211@LB@ | |@LB@5'-CGG...AAUCC G UUAUU...AUC-3'@LB@ GGGUUAUGUU CAGU@LB@ |||||||||| |||:@LB@ CCCAAUACAA GUCG@LB@3'-UUU...AAAUA AAA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -14.13 kcal/mol@LB@Hybridization Energy -17.9134 kcal/mol@LB@Unfolding Energy - mRNA 2.84721 kcal/mol@LB@Unfolding Energy - sRNA 0.931609 kcal/mol@LB@@LB@Position - mRNA 196 -- 210@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 8 -- 14@LB@ |
191 |
0.01094 |
0.1919 |
b3554 |
yiaF |
-11.44 |
0.087025 |
256 -- 281 |
6 -- 37 |
barrier effect co-colonization resistance factor; DUF3053 family lipoprotein |
|
_____________255______________________________282\n_____________|________________________________|\n5'-AAU...AUUAA_____________CUGA_______________GAUAA...AGC-3'\n______________UGGU__AGUUAGC_____GUGGGU___GUUUU\n______________||||__||:||||_____:|||||___|||||\n______________ACCA__UCGAUCG_____UACCCA___CAAAA\n3'-UUU...CAAGG____UG_______UAAAA______AUA_____AGUCG-5'\n_____________|________________________________|\n_____________38_______________________________5\n |
260 -- 266 |
25 -- 31 |
-21.639 kcal/mol |
7.5014 kcal/mol |
2.70019 kcal/mol |
255 282@LB@ | |@LB@5'-AAU...AUUAA CUGA GAUAA...AGC-3'@LB@ UGGU AGUUAGC GUGGGU GUUUU@LB@ |||| ||:|||| :||||| |||||@LB@ ACCA UCGAUCG UACCCA CAAAA@LB@3'-UUU...CAAGG UG UAAAA AUA AGUCG-5'@LB@ | |@LB@ 38 5@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -21.639 kcal/mol@LB@Unfolding Energy - mRNA 7.5014 kcal/mol@LB@Unfolding Energy - sRNA 2.70019 kcal/mol@LB@@LB@Position - mRNA 256 -- 281@LB@Position - sRNA 6 -- 37@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 25 -- 31@LB@ |