| 22 |
0.0002072 |
0.03165 |
b2341 |
fadJ |
-8.08 |
0.343546 |
182 -- 217 |
1 -- 44 |
enoyl-CoA hydratase/epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase |
|
_____________181__________________________________________218\n_____________|____________________________________________|\n5'-CAU...GGCAA__________A________AAUA______AA____ACA______GUUUA...CGG-3'\n______________UGGUUCU_GG___GGC_GG______AUGG___AUG____UCAGC\n______________||||||:_||___:||_:|______||||___|||____|||||\n______________ACCAAGG_CC___UCG_UC______UACC___UAC____AGUCG\n3'-UUU...CCUCC_______A__AUG___A__GUAAAA____CAA___AAAA_____-5'\n_____________|___________________________________________|\n_____________45__________________________________________1\n |
182 -- 188 |
38 -- 44 |
-22.4043 kcal/mol |
9.71146 kcal/mol |
4.60934 kcal/mol |
181 218@LB@ | |@LB@5'-CAU...GGCAA A AAUA AA ACA GUUUA...CGG-3'@LB@ UGGUUCU GG GGC GG AUGG AUG UCAGC@LB@ ||||||: || :|| :| |||| ||| |||||@LB@ ACCAAGG CC UCG UC UACC UAC AGUCG@LB@3'-UUU...CCUCC A AUG A GUAAAA CAA AAAA -5'@LB@ | |@LB@ 45 1@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -22.4043 kcal/mol@LB@Unfolding Energy - mRNA 9.71146 kcal/mol@LB@Unfolding Energy - sRNA 4.60934 kcal/mol@LB@@LB@Position - mRNA 182 -- 217@LB@Position - sRNA 1 -- 44@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 119 |
0.005024 |
0.1407 |
b2342 |
fadI |
-9.59 |
0.197573 |
199 -- 214 |
6 -- 21 |
beta-ketoacyl-CoA thiolase anaerobic subunit |
|
_____________198______________215\n_____________|________________|\n5'-UCC...GAGUG________CAG_____ACCGC...AUG-3'\n______________UUAUGGGU___GUUUU\n______________||||||||___|||||\n______________AAUACCCA___CAAAA\n3'-UUU...CGUAA________AUA_____AGUCG-5'\n_____________|________________|\n_____________22_______________5\n |
200 -- 206 |
14 -- 20 |
-13.0434 kcal/mol |
3.24348 kcal/mol |
0.208077 kcal/mol |
198 215@LB@ | |@LB@5'-UCC...GAGUG CAG ACCGC...AUG-3'@LB@ UUAUGGGU GUUUU@LB@ |||||||| |||||@LB@ AAUACCCA CAAAA@LB@3'-UUU...CGUAA AUA AGUCG-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -13.0434 kcal/mol@LB@Unfolding Energy - mRNA 3.24348 kcal/mol@LB@Unfolding Energy - sRNA 0.208077 kcal/mol@LB@@LB@Position - mRNA 199 -- 214@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 91 |
0.003099 |
0.1126 |
b2343 |
yfcZ |
-10.72 |
0.122030 |
27 -- 34 |
42 -- 49 |
UPF0381 family protein |
|
_____________26_______35\n_____________|________|\n5'-GAA...AAUUU________CGCAC...UGU-3'\n______________GGAGGUGG\n______________||||||||\n______________CCUCCACC\n3'-UUU...CGAUU________AAGGA...UCG-5'\n_____________|________|\n_____________50_______41\n |
28 -- 34 |
42 -- 48 |
-16.5707 kcal/mol |
3.08276 kcal/mol |
2.77009 kcal/mol |
26 35@LB@ | |@LB@5'-GAA...AAUUU CGCAC...UGU-3'@LB@ GGAGGUGG@LB@ ||||||||@LB@ CCUCCACC@LB@3'-UUU...CGAUU AAGGA...UCG-5'@LB@ | |@LB@ 50 41@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -16.5707 kcal/mol@LB@Unfolding Energy - mRNA 3.08276 kcal/mol@LB@Unfolding Energy - sRNA 2.77009 kcal/mol@LB@@LB@Position - mRNA 27 -- 34@LB@Position - sRNA 42 -- 49@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 114 |
0.004808 |
0.1404 |
b2372 |
yfdV |
-9.14 |
0.236047 |
240 -- 266 |
1 -- 35 |
putative transporter |
|
_____________239____________________________________267\n_____________|______________________________________|\n5'-UUC...UUAUC___AU__U______________________________GGCAG...CUC-3'\n______________GUA__CA_GCU_GU______UGGGUUAU____UUUAGC\n______________|||__||_|||_|:______||||||||____||:|||\n______________CAU__GU_CGA_CG______ACCCAAUA____AAGUCG\n3'-UUU...AGGAC___________U__UAAAAU________CAAA______-5'\n_____________|_____________________________________|\n_____________36____________________________________1\n |
254 -- 260 |
11 -- 17 |
-17.7969 kcal/mol |
7.16419 kcal/mol |
1.49508 kcal/mol |
239 267@LB@ | |@LB@5'-UUC...UUAUC AU U GGCAG...CUC-3'@LB@ GUA CA GCU GU UGGGUUAU UUUAGC@LB@ ||| || ||| |: |||||||| ||:|||@LB@ CAU GU CGA CG ACCCAAUA AAGUCG@LB@3'-UUU...AGGAC U UAAAAU CAAA -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -17.7969 kcal/mol@LB@Unfolding Energy - mRNA 7.16419 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 240 -- 266@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 89 |
0.002865 |
0.1082 |
b2378 |
lpxP |
-9.84 |
0.178666 |
41 -- 76 |
9 -- 35 |
palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase |
|
_____________40____________________________________77\n_____________|_____________________________________|\n5'-AUU...AUAAA______AUACC_____C____CUCCUCGU________CCUGA...CUU-3'\n______________GUACAG_____GCAUU__AUG________GGUUAUGU\n______________||||||_____|||||__|||________||||||||\n______________CAUGUC_____CGUAA__UAC________CCAAUACA\n3'-UUU...AGGAC______GAU_______AA___________________AAAAGUCG-5'\n_____________|_____________________________________|\n_____________36____________________________________8\n |
70 -- 76 |
9 -- 15 |
-19.6308 kcal/mol |
8.30521 kcal/mol |
1.48708 kcal/mol |
40 77@LB@ | |@LB@5'-AUU...AUAAA AUACC C CUCCUCGU CCUGA...CUU-3'@LB@ GUACAG GCAUU AUG GGUUAUGU@LB@ |||||| ||||| ||| ||||||||@LB@ CAUGUC CGUAA UAC CCAAUACA@LB@3'-UUU...AGGAC GAU AA AAAAGUCG-5'@LB@ | |@LB@ 36 8@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -19.6308 kcal/mol@LB@Unfolding Energy - mRNA 8.30521 kcal/mol@LB@Unfolding Energy - sRNA 1.48708 kcal/mol@LB@@LB@Position - mRNA 41 -- 76@LB@Position - sRNA 9 -- 35@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 15 |
0.0001004 |
0.02121 |
b2416 |
ptsI |
-14.97 |
0.011388 |
179 -- 212 |
1 -- 32 |
PEP-protein phosphotransferase of PTS system (enzyme I) |
|
_____________178_________________________________213\n_____________|___________________________________|\n5'-GUG...AAAAU____CACA____AGG___________A___CA___AUUUU...CCG-3'\n______________CAGU____AGUA___UA_GGGUUAUG_UUU__GGC\n______________|||:____||:|___||_||||||||_|||__:||\n______________GUCG____UCGU___AU_CCCAAUAC_AAA__UCG\n3'-UUU...ACCAU____A_______AAA__A________A___AG___-5'\n_____________|__________________________________|\n_____________33_________________________________1\n |
197 -- 203 |
10 -- 16 |
-21.5882 kcal/mol |
5.12711 kcal/mol |
1.49075 kcal/mol |
178 213@LB@ | |@LB@5'-GUG...AAAAU CACA AGG A CA AUUUU...CCG-3'@LB@ CAGU AGUA UA GGGUUAUG UUU GGC@LB@ |||: ||:| || |||||||| ||| :||@LB@ GUCG UCGU AU CCCAAUAC AAA UCG@LB@3'-UUU...ACCAU A AAA A A AG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -21.5882 kcal/mol@LB@Unfolding Energy - mRNA 5.12711 kcal/mol@LB@Unfolding Energy - sRNA 1.49075 kcal/mol@LB@@LB@Position - mRNA 179 -- 212@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 143 |
0.00681 |
0.158 |
b2418 |
pdxK |
-15.34 |
0.008827 |
271 -- 292 |
15 -- 47 |
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase |
|
_____________270_______________________________293\n_____________|_________________________________|\n5'-CAU...GUCGC_________________________________CAACAGCA-3'\n______________AGGUGGUUU_____ACGGC_AGC_____GUGGG\n______________||||||||:_____||:||_|||_____:||||\n______________UCCACCAAG_____UGUCG_UCG_____UACCC\n3'-UUU...AUUCC_________GACCA_____A___UAAAA_____AAUAC...UCG-5'\n_____________|_________________________________|\n_____________48________________________________14\n |
273 -- 279 |
39 -- 45 |
-26.4553 kcal/mol |
6.54205 kcal/mol |
4.57348 kcal/mol |
270 293@LB@ | |@LB@5'-CAU...GUCGC CAACAGCA-3'@LB@ AGGUGGUUU ACGGC AGC GUGGG@LB@ ||||||||: ||:|| ||| :||||@LB@ UCCACCAAG UGUCG UCG UACCC@LB@3'-UUU...AUUCC GACCA A UAAAA AAUAC...UCG-5'@LB@ | |@LB@ 48 14@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -26.4553 kcal/mol@LB@Unfolding Energy - mRNA 6.54205 kcal/mol@LB@Unfolding Energy - sRNA 4.57348 kcal/mol@LB@@LB@Position - mRNA 271 -- 292@LB@Position - sRNA 15 -- 47@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 80 |
0.002475 |
0.104 |
b2468 |
aegA |
-11.19 |
0.098238 |
223 -- 245 |
11 -- 33 |
putative oxidoreductase FeS binding subunit/NAD/FAD-binding subunit |
|
_____________222_____________________246\n_____________|_______________________|\n5'-UCU...GGCCA_____C____AUGUC________CAUGC...UGA-3'\n______________ACAGU_AGCA_____UGGGUUGU\n______________||||:_||||_____||||||:|\n______________UGUCG_UCGU_____ACCCAAUA\n3'-UUU...GACCA_____A____AAAAU________CAAAA...UCG-5'\n_____________|_______________________|\n_____________34______________________10\n |
239 -- 245 |
11 -- 17 |
-21.0997 kcal/mol |
8.44489 kcal/mol |
1.46958 kcal/mol |
222 246@LB@ | |@LB@5'-UCU...GGCCA C AUGUC CAUGC...UGA-3'@LB@ ACAGU AGCA UGGGUUGU@LB@ ||||: |||| ||||||:|@LB@ UGUCG UCGU ACCCAAUA@LB@3'-UUU...GACCA A AAAAU CAAAA...UCG-5'@LB@ | |@LB@ 34 10@LB@@LB@@LB@Energy -11.19 kcal/mol@LB@Hybridization Energy -21.0997 kcal/mol@LB@Unfolding Energy - mRNA 8.44489 kcal/mol@LB@Unfolding Energy - sRNA 1.46958 kcal/mol@LB@@LB@Position - mRNA 223 -- 245@LB@Position - sRNA 11 -- 33@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 82 |
0.002694 |
0.1082 |
b2474 |
tmcA |
-11.34 |
0.091143 |
115 -- 147 |
1 -- 34 |
elongator methionine tRNA (ac4C34) acetyltransferase |
|
_____________114________________________________148\n_____________|__________________________________|\n5'-GAU...AACGC__________UUAAACGU____UCGACAG_____GAUCC...UUG-3'\n______________UACAGCUGGU________GGUU________CGGC\n______________|||||||:|:________||||________|:||\n______________AUGUCGAUCG________CCAA________GUCG\n3'-UUU...GGACC__________UAAAAUAC____UACAAAAA____-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
118 -- 124 |
25 -- 31 |
-23.7384 kcal/mol |
10.9014 kcal/mol |
1.49507 kcal/mol |
114 148@LB@ | |@LB@5'-GAU...AACGC UUAAACGU UCGACAG GAUCC...UUG-3'@LB@ UACAGCUGGU GGUU CGGC@LB@ |||||||:|: |||| |:||@LB@ AUGUCGAUCG CCAA GUCG@LB@3'-UUU...GGACC UAAAAUAC UACAAAAA -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -23.7384 kcal/mol@LB@Unfolding Energy - mRNA 10.9014 kcal/mol@LB@Unfolding Energy - sRNA 1.49507 kcal/mol@LB@@LB@Position - mRNA 115 -- 147@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 192 |
0.01101 |
0.1919 |
b2478 |
dapA |
-6.78 |
0.505920 |
248 -- 269 |
25 -- 47 |
dihydrodipicolinate synthase |
|
_____________247_____________________270\n_____________|_______________________|\n5'-GGC...GAAAA____AAUG____UCG________UUGAA...CCA-3'\n______________AGGU____UCUG____GGCUAGC\n______________||||____:|||____:||||||\n______________UCCA____GGAC____UCGAUCG\n3'-UUU...AUUCC____CCAA____CAUG_______UAAAA...UCG-5'\n_____________|_______________________|\n_____________48______________________24\n |
263 -- 269 |
25 -- 31 |
-19.6963 kcal/mol |
8.35751 kcal/mol |
4.55753 kcal/mol |
247 270@LB@ | |@LB@5'-GGC...GAAAA AAUG UCG UUGAA...CCA-3'@LB@ AGGU UCUG GGCUAGC@LB@ |||| :||| :||||||@LB@ UCCA GGAC UCGAUCG@LB@3'-UUU...AUUCC CCAA CAUG UAAAA...UCG-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -6.78 kcal/mol@LB@Hybridization Energy -19.6963 kcal/mol@LB@Unfolding Energy - mRNA 8.35751 kcal/mol@LB@Unfolding Energy - sRNA 4.55753 kcal/mol@LB@@LB@Position - mRNA 248 -- 269@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 25 -- 31@LB@ |
