| 26 |
0.0003609 |
0.04652 |
b0197 |
metQ |
-15.58 |
0.007466 |
80 -- 120 |
1 -- 43 |
DL-methionine transporter subunit |
|
_____________79___________________________________________121\n_____________|____________________________________________|\n5'-GUG...AAUAC___A________U_____U____C_____U____UUAA______UCGCA...UUA-3'\n______________GGU__CUGGUAU_GCUGG_CAUU___UGG_UUAU____UUCAGU\n______________|||__||||||:_|||:|_||||___|||_||||____|||||:\n______________CCA__GACCAUG_CGAUC_GUAA___ACC_AAUA____AAGUCG\n3'-UUU...CUCCA___AG_______U__________AAU___C____CAAA______-5'\n_____________|___________________________________________|\n_____________44__________________________________________1\n |
84 -- 90 |
32 -- 38 |
-33.3889 kcal/mol |
13.205 kcal/mol |
4.6088 kcal/mol |
79 121@LB@ | |@LB@5'-GUG...AAUAC A U U C U UUAA UCGCA...UUA-3'@LB@ GGU CUGGUAU GCUGG CAUU UGG UUAU UUCAGU@LB@ ||| ||||||: |||:| |||| ||| |||| |||||:@LB@ CCA GACCAUG CGAUC GUAA ACC AAUA AAGUCG@LB@3'-UUU...CUCCA AG U AAU C CAAA -5'@LB@ | |@LB@ 44 1@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -33.3889 kcal/mol@LB@Unfolding Energy - mRNA 13.205 kcal/mol@LB@Unfolding Energy - sRNA 4.6088 kcal/mol@LB@@LB@Position - mRNA 80 -- 120@LB@Position - sRNA 1 -- 43@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 167 |
0.00885 |
0.1781 |
b0241 |
phoE |
-12.37 |
0.054121 |
1 -- 29 |
1 -- 31 |
outer membrane phosphoporin protein E |
b0929 b2215 b1377 |
______________1____________________________________30\n______________|____________________________________|\n___________5'-___A___________UGCGC___A_____________AAGCC...AUG-3'\n______________AGC_UGGCGUUUUGU_____GGG_________UCAGC\n______________|||_|:||:||||:|_____|||_________|||||\n______________UCG_AUCGUAAAAUA_____CCC_________AGUCG\n3'-UUU...CCAUG_______________________AAUACAAAA_____-5'\n_____________|____________________________________|\n_____________32___________________________________1\n |
9 -- 15 |
18 -- 24 |
-21.8929 kcal/mol |
8.03382 kcal/mol |
1.48722 kcal/mol |
1 30@LB@ | |@LB@ 5'- A UGCGC A AAGCC...AUG-3'@LB@ AGC UGGCGUUUUGU GGG UCAGC@LB@ ||| |:||:||||:| ||| |||||@LB@ UCG AUCGUAAAAUA CCC AGUCG@LB@3'-UUU...CCAUG AAUACAAAA -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -12.37 kcal/mol@LB@Hybridization Energy -21.8929 kcal/mol@LB@Unfolding Energy - mRNA 8.03382 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 1 -- 29@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 56 |
0.001349 |
0.08097 |
b0287 |
yagU |
-10.29 |
0.147287 |
182 -- 196 |
14 -- 37 |
DUF1440 family inner membrane acid resistance protein |
|
_____________181______________________197\n_____________|________________________|\n5'-AAC...CAUAA________________________AGAUA...GGG-3'\n______________UGGUACA___AGCA______GGGU\n______________|||||||___||||______||||\n______________ACCAUGU___UCGU______CCCA\n3'-UUU...CAAGG_______CGA____AAAAUA____AUACA...UCG-5'\n_____________|________________________|\n_____________38_______________________13\n |
182 -- 188 |
31 -- 37 |
-16.1787 kcal/mol |
3.22484 kcal/mol |
2.65978 kcal/mol |
181 197@LB@ | |@LB@5'-AAC...CAUAA AGAUA...GGG-3'@LB@ UGGUACA AGCA GGGU@LB@ ||||||| |||| ||||@LB@ ACCAUGU UCGU CCCA@LB@3'-UUU...CAAGG CGA AAAAUA AUACA...UCG-5'@LB@ | |@LB@ 38 13@LB@@LB@@LB@Energy -10.29 kcal/mol@LB@Hybridization Energy -16.1787 kcal/mol@LB@Unfolding Energy - mRNA 3.22484 kcal/mol@LB@Unfolding Energy - sRNA 2.65978 kcal/mol@LB@@LB@Position - mRNA 182 -- 196@LB@Position - sRNA 14 -- 37@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 9 |
2.519e-05 |
0.009407 |
b0435 |
bolA |
-15.32 |
0.008970 |
138 -- 163 |
15 -- 36 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________137________________________164\n_____________|__________________________|\n5'-UGA...GAAAC___AAAA_____________AAA___AUGGA...CCG-3'\n______________GGU____GCGGCUAGUAUUU___GGG\n______________|||____:|:|||||:||||___|||\n______________CCA____UGUCGAUCGUAAA___CCC\n3'-UUU...AAGGA____________________AUA___AAUAC...UCG-5'\n_____________|__________________________|\n_____________37_________________________14\n |
151 -- 157 |
21 -- 27 |
-22.9811 kcal/mol |
6.21269 kcal/mol |
1.45166 kcal/mol |
137 164@LB@ | |@LB@5'-UGA...GAAAC AAAA AAA AUGGA...CCG-3'@LB@ GGU GCGGCUAGUAUUU GGG@LB@ ||| :|:|||||:|||| |||@LB@ CCA UGUCGAUCGUAAA CCC@LB@3'-UUU...AAGGA AUA AAUAC...UCG-5'@LB@ | |@LB@ 37 14@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -22.9811 kcal/mol@LB@Unfolding Energy - mRNA 6.21269 kcal/mol@LB@Unfolding Energy - sRNA 1.45166 kcal/mol@LB@@LB@Position - mRNA 138 -- 163@LB@Position - sRNA 15 -- 36@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 122 |
0.005134 |
0.1413 |
b0437 |
clpP |
-11.97 |
0.066798 |
162 -- 180 |
3 -- 36 |
proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases |
|
_____________161________________________________181\n_____________|__________________________________|\n5'-CCA...CAAUC________A_________________________AUUUU...UCU-3'\n______________GGUACAGC_GGU_______________UUUUUCA\n______________||||||||_:|:_______________|||||||\n______________CCAUGUCG_UCG_______________AAAAAGU\n3'-UUU...AAGGA________A___UAAAAUACCCAAUAC_______CG-5'\n_____________|__________________________________|\n_____________37_________________________________2\n |
174 -- 180 |
3 -- 9 |
-16.9285 kcal/mol |
3.46571 kcal/mol |
1.49503 kcal/mol |
161 181@LB@ | |@LB@5'-CCA...CAAUC A AUUUU...UCU-3'@LB@ GGUACAGC GGU UUUUUCA@LB@ |||||||| :|: |||||||@LB@ CCAUGUCG UCG AAAAAGU@LB@3'-UUU...AAGGA A UAAAAUACCCAAUAC CG-5'@LB@ | |@LB@ 37 2@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -16.9285 kcal/mol@LB@Unfolding Energy - mRNA 3.46571 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 162 -- 180@LB@Position - sRNA 3 -- 36@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 164 |
0.008548 |
0.1748 |
b0461 |
tomB |
-9.85 |
0.177976 |
15 -- 39 |
9 -- 30 |
Hha toxicity attenuator; conjugation-related protein |
|
_____________14________________________40\n_____________|_________________________|\n5'-UGC...UUAGU________GAAAAA___A__CC___CCCGC...AUC-3'\n______________GCUAGUAU______GUG_GU__UGU\n______________|||||:||______:||_||__|||\n______________CGAUCGUA______UAC_CA__ACA\n3'-UUU...CAUGU________AAA______C__AU___AAAAGUCG-5'\n_____________|_________________________|\n_____________31________________________8\n |
16 -- 22 |
23 -- 29 |
-13.2091 kcal/mol |
1.89111 kcal/mol |
1.4702 kcal/mol |
14 40@LB@ | |@LB@5'-UGC...UUAGU GAAAAA A CC CCCGC...AUC-3'@LB@ GCUAGUAU GUG GU UGU@LB@ |||||:|| :|| || |||@LB@ CGAUCGUA UAC CA ACA@LB@3'-UUU...CAUGU AAA C AU AAAAGUCG-5'@LB@ | |@LB@ 31 8@LB@@LB@@LB@Energy -9.85 kcal/mol@LB@Hybridization Energy -13.2091 kcal/mol@LB@Unfolding Energy - mRNA 1.89111 kcal/mol@LB@Unfolding Energy - sRNA 1.4702 kcal/mol@LB@@LB@Position - mRNA 15 -- 39@LB@Position - sRNA 9 -- 30@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 78 |
0.002256 |
0.09621 |
b0509 |
glxR |
-14.00 |
0.021344 |
191 -- 236 |
14 -- 48 |
tartronate semialdehyde reductase NADH-dependent |
b3882 b3125 |
_____________190______________________________________________237\n_____________|________________________________________________|\n5'-AGG...UAAAA_____UAAUUAUGAAA____GAUUUAU_____UA______________ACACC...CGG-3'\n______________GAGGU___________CUGG_______UGGCU__GGCAU__UAUGGGU\n______________|||||___________||||_______::|||__:||||__|||||||\n______________CUCCA___________GACC_______GUCGA__UCGUA__AUACCCA\n3'-UUU...GAUUC_____CCAAG__________AU_________________AA_______AUACA...UCG-5'\n_____________|________________________________________________|\n_____________49_______________________________________________13\n |
230 -- 236 |
14 -- 20 |
-26.1649 kcal/mol |
7.59311 kcal/mol |
4.57384 kcal/mol |
190 237@LB@ | |@LB@5'-AGG...UAAAA UAAUUAUGAAA GAUUUAU UA ACACC...CGG-3'@LB@ GAGGU CUGG UGGCU GGCAU UAUGGGU@LB@ ||||| |||| ::||| :|||| |||||||@LB@ CUCCA GACC GUCGA UCGUA AUACCCA@LB@3'-UUU...GAUUC CCAAG AU AA AUACA...UCG-5'@LB@ | |@LB@ 49 13@LB@@LB@@LB@Energy -14.00 kcal/mol@LB@Hybridization Energy -26.1649 kcal/mol@LB@Unfolding Energy - mRNA 7.59311 kcal/mol@LB@Unfolding Energy - sRNA 4.57384 kcal/mol@LB@@LB@Position - mRNA 191 -- 236@LB@Position - sRNA 14 -- 48@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 99 |
0.003591 |
0.1219 |
b0533 |
sfmH |
-7.90 |
0.364135 |
113 -- 140 |
1 -- 34 |
FimA homolog function unknown |
b3145 b0941 |
_____________112________________________________141\n_____________|__________________________________|\n5'-GAC...AAGCU______A___CGUCACU_________________AGUUU...AUA-3'\n______________UACAGC_AGC_________GUUA____UUUCGGC\n______________||||||_|||_________||||____||||:||\n______________AUGUCG_UCG_________CAAU____AAAGUCG\n3'-UUU...GGACC______A___UAAAAUACC____ACAA_______-5'\n_____________|_________________________________|\n_____________35________________________________1\n |
134 -- 140 |
1 -- 7 |
-18.6412 kcal/mol |
9.24123 kcal/mol |
1.49507 kcal/mol |
112 141@LB@ | |@LB@5'-GAC...AAGCU A CGUCACU AGUUU...AUA-3'@LB@ UACAGC AGC GUUA UUUCGGC@LB@ |||||| ||| |||| ||||:||@LB@ AUGUCG UCG CAAU AAAGUCG@LB@3'-UUU...GGACC A UAAAAUACC ACAA -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -7.90 kcal/mol@LB@Hybridization Energy -18.6412 kcal/mol@LB@Unfolding Energy - mRNA 9.24123 kcal/mol@LB@Unfolding Energy - sRNA 1.49507 kcal/mol@LB@@LB@Position - mRNA 113 -- 140@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 197 |
0.01153 |
0.1967 |
b0610 |
rnk |
-10.49 |
0.135367 |
130 -- 162 |
7 -- 39 |
regulator of nucleoside diphosphate kinase |
|
_____________129__________________________________163\n_____________|____________________________________|\n5'-UCU...CGCCG___________G__G_____CUUU____________AUCUG...CGU-3'\n______________CCUG__ACGGU_AG_GUUUU____UGGG_UAUGUUU\n______________||||__||:|:_||_:||||____||||_|||||||\n______________GGAC__UGUCG_UC_UAAAA____ACCC_AUACAAA\n3'-UUU...ACCAA____CA_____A__G_____U_______A_______AAGUCG-5'\n_____________|____________________________________|\n_____________40___________________________________6\n |
156 -- 162 |
7 -- 13 |
-25.6411 kcal/mol |
10.5512 kcal/mol |
4.60345 kcal/mol |
129 163@LB@ | |@LB@5'-UCU...CGCCG G G CUUU AUCUG...CGU-3'@LB@ CCUG ACGGU AG GUUUU UGGG UAUGUUU@LB@ |||| ||:|: || :|||| |||| |||||||@LB@ GGAC UGUCG UC UAAAA ACCC AUACAAA@LB@3'-UUU...ACCAA CA A G U A AAGUCG-5'@LB@ | |@LB@ 40 6@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -25.6411 kcal/mol@LB@Unfolding Energy - mRNA 10.5512 kcal/mol@LB@Unfolding Energy - sRNA 4.60345 kcal/mol@LB@@LB@Position - mRNA 130 -- 162@LB@Position - sRNA 7 -- 39@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 179 |
0.01003 |
0.1882 |
b0619 |
citA |
-9.15 |
0.235039 |
224 -- 237 |
20 -- 33 |
sensory histidine kinase in two-component regulatory system with CitB |
|
_____________223____________238\n_____________|______________|\n5'-CAU...AAUAA______U_______UCCAA...UCA-3'\n______________ACAGUU_GCAUUUU\n______________||||:|_|||||||\n______________UGUCGA_CGUAAAA\n3'-UUU...GACCA______U_______UACCC...UCG-5'\n_____________|______________|\n_____________34_____________19\n |
231 -- 237 |
20 -- 26 |
-13.7934 kcal/mol |
3.21006 kcal/mol |
1.43447 kcal/mol |
223 238@LB@ | |@LB@5'-CAU...AAUAA U UCCAA...UCA-3'@LB@ ACAGUU GCAUUUU@LB@ ||||:| |||||||@LB@ UGUCGA CGUAAAA@LB@3'-UUU...GACCA U UACCC...UCG-5'@LB@ | |@LB@ 34 19@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -13.7934 kcal/mol@LB@Unfolding Energy - mRNA 3.21006 kcal/mol@LB@Unfolding Energy - sRNA 1.43447 kcal/mol@LB@@LB@Position - mRNA 224 -- 237@LB@Position - sRNA 20 -- 33@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 20 -- 26@LB@ |
