| 39 |
0.0008004 |
0.06626 |
b1533 |
eamA |
-12.23 |
0.058236 |
233 -- 264 |
16 -- 49 |
cysteine and O-acetyl-L-serine efflux system |
|
_____________232_________________________________265\n_____________|___________________________________|\n5'-GUU...CUACU__UA_____CGUA___G_______A__________UCAUC...UGA-3'\n______________GG__GUGGU____UGG___GGCUA__AUUUUGUGG\n______________||__|||||____|||___:||||__|||||:|||\n______________CC__CACCA____ACC___UCGAU__UAAAAUACC\n3'-UUU...CGAUU__UC_____AGG____AUG_____CG_________CAAUA...UCG-5'\n_____________|___________________________________|\n_____________50__________________________________15\n |
258 -- 264 |
16 -- 22 |
-27.5137 kcal/mol |
10.7081 kcal/mol |
4.57266 kcal/mol |
232 265@LB@ | |@LB@5'-GUU...CUACU UA CGUA G A UCAUC...UGA-3'@LB@ GG GUGGU UGG GGCUA AUUUUGUGG@LB@ || ||||| ||| :|||| |||||:|||@LB@ CC CACCA ACC UCGAU UAAAAUACC@LB@3'-UUU...CGAUU UC AGG AUG CG CAAUA...UCG-5'@LB@ | |@LB@ 50 15@LB@@LB@@LB@Energy -12.23 kcal/mol@LB@Hybridization Energy -27.5137 kcal/mol@LB@Unfolding Energy - mRNA 10.7081 kcal/mol@LB@Unfolding Energy - sRNA 4.57266 kcal/mol@LB@@LB@Position - mRNA 233 -- 264@LB@Position - sRNA 16 -- 49@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 37 |
0.0006972 |
0.06333 |
b1594 |
mlc |
-9.54 |
0.201866 |
190 -- 226 |
24 -- 50 |
glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
|
_____________189___________________________________227\n_____________|_____________________________________|\n5'-AAA...AUAUA____GUAUGC_______G___AAAAC____CUG____CAUUG...GUA-3'\n______________GGGA______GGUGGUU_CUG_____CAGC___GGCA\n______________:|||______|||||||_|||_____||||___:|||\n______________UCCU______CCACCAA_GAC_____GUCG___UCGU\n3'-UUU...CCGAU_________________G___CAU______A______AAAAU...UCG-5'\n_____________|_____________________________________|\n_____________51____________________________________23\n |
200 -- 206 |
40 -- 46 |
-27.1319 kcal/mol |
12.9802 kcal/mol |
4.6134 kcal/mol |
189 227@LB@ | |@LB@5'-AAA...AUAUA GUAUGC G AAAAC CUG CAUUG...GUA-3'@LB@ GGGA GGUGGUU CUG CAGC GGCA@LB@ :||| ||||||| ||| |||| :|||@LB@ UCCU CCACCAA GAC GUCG UCGU@LB@3'-UUU...CCGAU G CAU A AAAAU...UCG-5'@LB@ | |@LB@ 51 23@LB@@LB@@LB@Energy -9.54 kcal/mol@LB@Hybridization Energy -27.1319 kcal/mol@LB@Unfolding Energy - mRNA 12.9802 kcal/mol@LB@Unfolding Energy - sRNA 4.6134 kcal/mol@LB@@LB@Position - mRNA 190 -- 226@LB@Position - sRNA 24 -- 50@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 67 |
0.00183 |
0.09081 |
b1607 |
ydgC |
-12.69 |
0.045650 |
228 -- 262 |
1 -- 36 |
GlpM family inner membrane protein |
|
_____________227__________________________________263\n_____________|____________________________________|\n5'-AUG...CGCUC_____________GUGCUGUUGAUUG__G_______AAAAA...CAC-3'\n______________GGUGC_GCUGGUA_____________GU_UUUUAGC\n______________|||:|_|||:|:|_____________||_|||:|||\n______________CCAUG_CGAUCGU_____________CA_AAAGUCG\n3'-UUU...AAGGA_____U_______AAAAUACCCAAUA__A_______-5'\n_____________|___________________________________|\n_____________37__________________________________1\n |
256 -- 262 |
1 -- 7 |
-24.769 kcal/mol |
10.5859 kcal/mol |
1.49509 kcal/mol |
227 263@LB@ | |@LB@5'-AUG...CGCUC GUGCUGUUGAUUG G AAAAA...CAC-3'@LB@ GGUGC GCUGGUA GU UUUUAGC@LB@ |||:| |||:|:| || |||:|||@LB@ CCAUG CGAUCGU CA AAAGUCG@LB@3'-UUU...AAGGA U AAAAUACCCAAUA A -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -24.769 kcal/mol@LB@Unfolding Energy - mRNA 10.5859 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 228 -- 262@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 186 |
0.01069 |
0.1919 |
b1614 |
ydgA |
-8.85 |
0.262719 |
182 -- 191 |
16 -- 25 |
DUF945 family protein |
|
_____________181________192\n_____________|__________|\n5'-ACA...GAUUU__________AUAAU...UCG-3'\n______________CAUUUUAUGG\n______________||||||||||\n______________GUAAAAUACC\n3'-UUU...CGAUC__________CAAUA...UCG-5'\n_____________|__________|\n_____________26_________15\n |
185 -- 191 |
16 -- 22 |
-11.3536 kcal/mol |
2.1555 kcal/mol |
0.346409 kcal/mol |
181 192@LB@ | |@LB@5'-ACA...GAUUU AUAAU...UCG-3'@LB@ CAUUUUAUGG@LB@ ||||||||||@LB@ GUAAAAUACC@LB@3'-UUU...CGAUC CAAUA...UCG-5'@LB@ | |@LB@ 26 15@LB@@LB@@LB@Energy -8.85 kcal/mol@LB@Hybridization Energy -11.3536 kcal/mol@LB@Unfolding Energy - mRNA 2.1555 kcal/mol@LB@Unfolding Energy - sRNA 0.346409 kcal/mol@LB@@LB@Position - mRNA 182 -- 191@LB@Position - sRNA 16 -- 25@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 130 |
0.005552 |
0.1429 |
b1622 |
malY |
-10.60 |
0.128513 |
216 -- 278 |
1 -- 51 |
PLP-dependent beta-cystathionase and maltose regulon regulator |
|
_____________215_____________________________________________________________279\n_____________|_______________________________________________________________|\n5'-UCG...UUUCA____UC____A__G_CAUG___CA______ACACA_____A______CGCUGACCG_______ACUGC...UCA-3'\n______________AAGG__GUGG_UC_U____GCA__UGGUGU_____GUGGG_UUAUGU_________UUUCGGC\n______________||||__||||_||_|____:||__|:|::|_____:||||_||||||_________||||:||\n______________UUCC__CACC_AG_A____UGU__AUCGUA_____UACCC_AAUACA_________AAAGUCG\n3'-UUU...UCCGA____UC____A__G_CCA____CG______AAA______________A_______________-5'\n_____________|______________________________________________________________|\n_____________52_____________________________________________________________1\n |
272 -- 278 |
1 -- 7 |
-34.7892 kcal/mol |
19.4932 kcal/mol |
4.69283 kcal/mol |
215 279@LB@ | |@LB@5'-UCG...UUUCA UC A G CAUG CA ACACA A CGCUGACCG ACUGC...UCA-3'@LB@ AAGG GUGG UC U GCA UGGUGU GUGGG UUAUGU UUUCGGC@LB@ |||| |||| || | :|| |:|::| :|||| |||||| ||||:||@LB@ UUCC CACC AG A UGU AUCGUA UACCC AAUACA AAAGUCG@LB@3'-UUU...UCCGA UC A G CCA CG AAA A -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -10.60 kcal/mol@LB@Hybridization Energy -34.7892 kcal/mol@LB@Unfolding Energy - mRNA 19.4932 kcal/mol@LB@Unfolding Energy - sRNA 4.69283 kcal/mol@LB@@LB@Position - mRNA 216 -- 278@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 128 |
0.005434 |
0.142 |
b1628 |
rsxB |
-10.87 |
0.114026 |
241 -- 273 |
10 -- 44 |
SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein |
|
_____________240___________________________________274\n_____________|_____________________________________|\n5'-CAC...CCUGC___G______CGUU____GC_____C___________CCUCC...ACG-3'\n______________UGG__CCUGG____UGGC___CAUU___UGGGUUAUG\n______________|||__|||||____::||___||||___|||||||||\n______________ACC__GGACC____GUCG___GUAA___ACCCAAUAC\n3'-UUU...CCUCC___AA_____AU______AUC____AAU_________AAAAA...UCG-5'\n_____________|_____________________________________|\n_____________45____________________________________9\n |
267 -- 273 |
10 -- 16 |
-28.3112 kcal/mol |
12.8396 kcal/mol |
4.60525 kcal/mol |
240 274@LB@ | |@LB@5'-CAC...CCUGC G CGUU GC C CCUCC...ACG-3'@LB@ UGG CCUGG UGGC CAUU UGGGUUAUG@LB@ ||| ||||| ::|| |||| |||||||||@LB@ ACC GGACC GUCG GUAA ACCCAAUAC@LB@3'-UUU...CCUCC AA AU AUC AAU AAAAA...UCG-5'@LB@ | |@LB@ 45 9@LB@@LB@@LB@Energy -10.87 kcal/mol@LB@Hybridization Energy -28.3112 kcal/mol@LB@Unfolding Energy - mRNA 12.8396 kcal/mol@LB@Unfolding Energy - sRNA 4.60525 kcal/mol@LB@@LB@Position - mRNA 241 -- 273@LB@Position - sRNA 10 -- 44@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 172 |
0.009254 |
0.1803 |
b1676 |
pykF |
-8.82 |
0.265733 |
268 -- 283 |
23 -- 40 |
pyruvate kinase I |
|
_____________267________________284\n_____________|__________________|\n5'-GGA...UAAAA_G________________GAACG...UGA-3'\n______________U_CUGG_AC_GCUGGCAU\n______________|_||||_||_|||:||||\n______________A_GACC_UG_CGAUCGUA\n3'-UUU...CACCA_G____A__U________AAAUA...UCG-5'\n_____________|__________________|\n_____________41_________________22\n |
277 -- 283 |
23 -- 29 |
-20.12 kcal/mol |
6.74388 kcal/mol |
4.55554 kcal/mol |
267 284@LB@ | |@LB@5'-GGA...UAAAA G GAACG...UGA-3'@LB@ U CUGG AC GCUGGCAU@LB@ | |||| || |||:||||@LB@ A GACC UG CGAUCGUA@LB@3'-UUU...CACCA G A U AAAUA...UCG-5'@LB@ | |@LB@ 41 22@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -20.12 kcal/mol@LB@Unfolding Energy - mRNA 6.74388 kcal/mol@LB@Unfolding Energy - sRNA 4.55554 kcal/mol@LB@@LB@Position - mRNA 268 -- 283@LB@Position - sRNA 23 -- 40@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 13 |
6.02e-05 |
0.01556 |
b1686 |
menI |
-18.50 |
0.000608 |
260 -- 300 |
10 -- 49 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________259_______________________________________300\n_____________|_________________________________________|\n5'-GGC...AACAU__U____________A___UC___UUGAACA___U___G___-3'\n______________GG_GG_GGUUCCUGG_UAU__GCU_______UAU_GGU_AUG\n______________||_||_|||||||||_||:__|||_______|||_|||_|||\n______________CC_CC_CCAAGGACC_AUG__CGA_______AUA_CCA_UAC\n3'-UUU...CGAUU__U__A_____________U____UCGUAAA___C___A___AAAAA...UCG-5'\n_____________|__________________________________________|\n_____________50_________________________________________9\n |
267 -- 273 |
35 -- 41 |
-31.9875 kcal/mol |
8.87718 kcal/mol |
4.60649 kcal/mol |
259 300@LB@ | |@LB@5'-GGC...AACAU U A UC UUGAACA U G -3'@LB@ GG GG GGUUCCUGG UAU GCU UAU GGU AUG@LB@ || || ||||||||| ||: ||| ||| ||| |||@LB@ CC CC CCAAGGACC AUG CGA AUA CCA UAC@LB@3'-UUU...CGAUU U A U UCGUAAA C A AAAAA...UCG-5'@LB@ | |@LB@ 50 9@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -31.9875 kcal/mol@LB@Unfolding Energy - mRNA 8.87718 kcal/mol@LB@Unfolding Energy - sRNA 4.60649 kcal/mol@LB@@LB@Position - mRNA 260 -- 300@LB@Position - sRNA 10 -- 49@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 28 |
0.000409 |
0.0491 |
b1688 |
ydiK |
-9.69 |
0.189548 |
195 -- 219 |
1 -- 33 |
UPF0118 family inner membrane protein |
|
_____________194_______________________________220\n_____________|_________________________________|\n5'-AUG...GAAAA__________________UAA_____CG_____CCAGG...CCU-3'\n______________GUAGUUA________UGG___AUGUU__UCAGC\n______________::||:||________|||___|||||__|||||\n______________UGUCGAU________ACC___UACAA__AGUCG\n3'-UUU...GACCA_______CGUAAAAU___CAA_____AA_____-5'\n_____________|________________________________|\n_____________34_______________________________1\n |
195 -- 201 |
27 -- 33 |
-14.5165 kcal/mol |
3.32905 kcal/mol |
1.49313 kcal/mol |
194 220@LB@ | |@LB@5'-AUG...GAAAA UAA CG CCAGG...CCU-3'@LB@ GUAGUUA UGG AUGUU UCAGC@LB@ ::||:|| ||| ||||| |||||@LB@ UGUCGAU ACC UACAA AGUCG@LB@3'-UUU...GACCA CGUAAAAU CAA AA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -14.5165 kcal/mol@LB@Unfolding Energy - mRNA 3.32905 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 195 -- 219@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 121 |
0.005123 |
0.1413 |
b1735 |
chbR |
-8.25 |
0.324466 |
38 -- 46 |
30 -- 38 |
repressor of chb operon for N N'-diacetylchitobiose utilization |
|
_____________37________47\n_____________|_________|\n5'-GAU...CGCAU_________ACGAA...CUG-3'\n______________CUGGUACAG\n______________|||||||||\n______________GACCAUGUC\n3'-UUU...CCAAG_________GAUCG...UCG-5'\n_____________|_________|\n_____________39________29\n |
40 -- 46 |
30 -- 36 |
-15.5432 kcal/mol |
3.07825 kcal/mol |
4.2107 kcal/mol |
37 47@LB@ | |@LB@5'-GAU...CGCAU ACGAA...CUG-3'@LB@ CUGGUACAG@LB@ |||||||||@LB@ GACCAUGUC@LB@3'-UUU...CCAAG GAUCG...UCG-5'@LB@ | |@LB@ 39 29@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -15.5432 kcal/mol@LB@Unfolding Energy - mRNA 3.07825 kcal/mol@LB@Unfolding Energy - sRNA 4.2107 kcal/mol@LB@@LB@Position - mRNA 38 -- 46@LB@Position - sRNA 30 -- 38@LB@Position Seed - mRNA 40 -- 46@LB@Position Seed - sRNA 30 -- 36@LB@ |
