| 74 |
0.00218 |
0.09621 |
b2722 |
hycD |
-16.42 |
0.003958 |
87 -- 124 |
10 -- 46 |
hydrogenase 3 membrane subunit |
|
_____________86_______________________________________125\n_____________|________________________________________|\n5'-UCA...AAUCC________U_______CG________GUGCGA___GA___CGUUG...ACC-3'\n______________GGUG__UC_CUGGUGC__GGCUGGCA______GGG__GUG\n______________||||__||_|||||:|__:|||:|||______|||__:||\n______________CCAC__AG_GACCAUG__UCGAUCGU______CCC__UAC\n3'-UUU...UUCCU____CA____________________AAAAUA___AA___AAAAA...UCG-5'\n_____________|________________________________________|\n_____________47_______________________________________9\n |
104 -- 110 |
24 -- 30 |
-37.0223 kcal/mol |
15.9993 kcal/mol |
4.60552 kcal/mol |
86 125@LB@ | |@LB@5'-UCA...AAUCC U CG GUGCGA GA CGUUG...ACC-3'@LB@ GGUG UC CUGGUGC GGCUGGCA GGG GUG@LB@ |||| || |||||:| :|||:||| ||| :||@LB@ CCAC AG GACCAUG UCGAUCGU CCC UAC@LB@3'-UUU...UUCCU CA AAAAUA AA AAAAA...UCG-5'@LB@ | |@LB@ 47 9@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -37.0223 kcal/mol@LB@Unfolding Energy - mRNA 15.9993 kcal/mol@LB@Unfolding Energy - sRNA 4.60552 kcal/mol@LB@@LB@Position - mRNA 87 -- 124@LB@Position - sRNA 10 -- 46@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 55 |
0.001331 |
0.08097 |
b2742 |
nlpD |
-12.02 |
0.064935 |
253 -- 272 |
24 -- 44 |
activator of AmiC murein hydrolase activity lipoprotein |
|
_____________252___________________273\n_____________|_____________________|\n5'-UAU...GUCAC_______GC____________GGCUG...CGG-3'\n______________UGGUUUC___UAUGGCUGGCA\n______________|||||:|___||::|||:|||\n______________ACCAAGG___AUGUCGAUCGU\n3'-UUU...CCUCC_______ACC___________AAAAU...UCG-5'\n_____________|_____________________|\n_____________45____________________23\n |
266 -- 272 |
24 -- 30 |
-23.7485 kcal/mol |
7.16759 kcal/mol |
4.55788 kcal/mol |
252 273@LB@ | |@LB@5'-UAU...GUCAC GC GGCUG...CGG-3'@LB@ UGGUUUC UAUGGCUGGCA@LB@ |||||:| ||::|||:|||@LB@ ACCAAGG AUGUCGAUCGU@LB@3'-UUU...CCUCC ACC AAAAU...UCG-5'@LB@ | |@LB@ 45 23@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -23.7485 kcal/mol@LB@Unfolding Energy - mRNA 7.16759 kcal/mol@LB@Unfolding Energy - sRNA 4.55788 kcal/mol@LB@@LB@Position - mRNA 253 -- 272@LB@Position - sRNA 24 -- 44@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 115 |
0.004814 |
0.1404 |
b2743 |
pcm |
-10.63 |
0.126788 |
157 -- 183 |
29 -- 48 |
L-isoaspartate protein carboxylmethyltransferase type II |
|
_____________156_________________________184\n_____________|___________________________|\n5'-AUC...CGCAA__U_______CAGA_____UAA_____GUGGG...AAA-3'\n______________GA_GUGGUUU____CUGGU___ACAGC\n______________||_||||||:____|||||___|||||\n______________CU_CACCAAG____GACCA___UGUCG\n3'-UUU...GAUUC__C________________________AUCGU...UCG-5'\n_____________|___________________________|\n_____________49__________________________28\n |
160 -- 166 |
39 -- 45 |
-22.1612 kcal/mol |
7.2267 kcal/mol |
4.30129 kcal/mol |
156 184@LB@ | |@LB@5'-AUC...CGCAA U CAGA UAA GUGGG...AAA-3'@LB@ GA GUGGUUU CUGGU ACAGC@LB@ || ||||||: ||||| |||||@LB@ CU CACCAAG GACCA UGUCG@LB@3'-UUU...GAUUC C AUCGU...UCG-5'@LB@ | |@LB@ 49 28@LB@@LB@@LB@Energy -10.63 kcal/mol@LB@Hybridization Energy -22.1612 kcal/mol@LB@Unfolding Energy - mRNA 7.2267 kcal/mol@LB@Unfolding Energy - sRNA 4.30129 kcal/mol@LB@@LB@Position - mRNA 157 -- 183@LB@Position - sRNA 29 -- 48@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 190 |
0.0109 |
0.1919 |
b2749 |
ygbE |
-11.00 |
0.107048 |
99 -- 107 |
29 -- 37 |
DUF3561 family inner membrane protein |
|
_____________98________108\n_____________|_________|\n5'-UGC...AAAUU_________AAUUA...UCU-3'\n______________UGGUACAGC\n______________|||||||||\n______________ACCAUGUCG\n3'-UUU...CAAGG_________AUCGU...UCG-5'\n_____________|_________|\n_____________38________28\n |
101 -- 107 |
29 -- 35 |
-15.5774 kcal/mol |
2.20256 kcal/mol |
2.37218 kcal/mol |
98 108@LB@ | |@LB@5'-UGC...AAAUU AAUUA...UCU-3'@LB@ UGGUACAGC@LB@ |||||||||@LB@ ACCAUGUCG@LB@3'-UUU...CAAGG AUCGU...UCG-5'@LB@ | |@LB@ 38 28@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -15.5774 kcal/mol@LB@Unfolding Energy - mRNA 2.20256 kcal/mol@LB@Unfolding Energy - sRNA 2.37218 kcal/mol@LB@@LB@Position - mRNA 99 -- 107@LB@Position - sRNA 29 -- 37@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 163 |
0.008426 |
0.1737 |
b2780 |
pyrG |
-11.06 |
0.104451 |
98 -- 140 |
14 -- 51 |
CTP synthetase |
|
_____________97_____________________________________________141\n_____________|______________________________________________|\n5'-UGU...GCGAA_______GAUAAUGAAA____G___C____G______GUUC_____AUACU...GCC-3'\n______________GAGGAGG__________GUUU_UGG_ACAG_U__CAU_____GGGU\n______________:||||||__________|||:_|||_||||_|__|||_____||||\n______________UUCCUCC__________CAAG_ACC_UGUC_A__GUA_____CCCA\n3'-UUU...UCCGA_______AC____________G___A____G_UC___AAAUA____AUACA...UCG-5'\n_____________|______________________________________________|\n_____________52_____________________________________________13\n |
98 -- 104 |
45 -- 51 |
-28.7226 kcal/mol |
13.0099 kcal/mol |
4.65749 kcal/mol |
97 141@LB@ | |@LB@5'-UGU...GCGAA GAUAAUGAAA G C G GUUC AUACU...GCC-3'@LB@ GAGGAGG GUUU UGG ACAG U CAU GGGU@LB@ :|||||| |||: ||| |||| | ||| ||||@LB@ UUCCUCC CAAG ACC UGUC A GUA CCCA@LB@3'-UUU...UCCGA AC G A G UC AAAUA AUACA...UCG-5'@LB@ | |@LB@ 52 13@LB@@LB@@LB@Energy -11.06 kcal/mol@LB@Hybridization Energy -28.7226 kcal/mol@LB@Unfolding Energy - mRNA 13.0099 kcal/mol@LB@Unfolding Energy - sRNA 4.65749 kcal/mol@LB@@LB@Position - mRNA 98 -- 140@LB@Position - sRNA 14 -- 51@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 27 |
0.0003737 |
0.04652 |
b2828 |
lgt |
-19.83 |
0.000134 |
254 -- 300 |
13 -- 50 |
phosphatidylglycerol-prolipoprotein diacylglyceryl transferase |
|
_____________253____________________________________________300\n_____________|______________________________________________|\n5'-CCU...UCAAU____CCC____CGC___A__________CUGAU____CUG_______-3'\n______________AGGA___GUGG___UUC_CUGGUACGGC_____GUAU___GUGGGUU\n______________||||___||||___|||_|||||||:||_____|:||___:||||||\n______________UCCU___CACC___AAG_GACCAUGUCG_____CGUA___UACCCAA\n3'-UUU...CCGAU____C_______________________AU_______AAA_______UACAA...UCG-5'\n_____________|_______________________________________________|\n_____________51______________________________________________12\n |
294 -- 300 |
13 -- 19 |
-39.0639 kcal/mol |
14.6059 kcal/mol |
4.62837 kcal/mol |
253 300@LB@ | |@LB@5'-CCU...UCAAU CCC CGC A CUGAU CUG -3'@LB@ AGGA GUGG UUC CUGGUACGGC GUAU GUGGGUU@LB@ |||| |||| ||| |||||||:|| |:|| :||||||@LB@ UCCU CACC AAG GACCAUGUCG CGUA UACCCAA@LB@3'-UUU...CCGAU C AU AAA UACAA...UCG-5'@LB@ | |@LB@ 51 12@LB@@LB@@LB@Energy -19.83 kcal/mol@LB@Hybridization Energy -39.0639 kcal/mol@LB@Unfolding Energy - mRNA 14.6059 kcal/mol@LB@Unfolding Energy - sRNA 4.62837 kcal/mol@LB@@LB@Position - mRNA 254 -- 300@LB@Position - sRNA 13 -- 50@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 48 |
0.001117 |
0.07744 |
b2829 |
ptsP |
-13.12 |
0.035810 |
22 -- 37 |
14 -- 33 |
PEP-protein phosphotransferase enzyme I; GAF domain containing protein |
|
_____________21___________________38\n_____________|____________________|\n5'-CCA...GUUUG____________________AAGUU...UGG-3'\n______________ACGGCUGGCG____AUGGGU\n______________||:|||:||:____||||||\n______________UGUCGAUCGU____UACCCA\n3'-UUU...GACCA__________AAAA______AUACA...UCG-5'\n_____________|____________________|\n_____________34___________________13\n |
25 -- 31 |
24 -- 30 |
-23.1334 kcal/mol |
8.56068 kcal/mol |
1.44884 kcal/mol |
21 38@LB@ | |@LB@5'-CCA...GUUUG AAGUU...UGG-3'@LB@ ACGGCUGGCG AUGGGU@LB@ ||:|||:||: ||||||@LB@ UGUCGAUCGU UACCCA@LB@3'-UUU...GACCA AAAA AUACA...UCG-5'@LB@ | |@LB@ 34 13@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -23.1334 kcal/mol@LB@Unfolding Energy - mRNA 8.56068 kcal/mol@LB@Unfolding Energy - sRNA 1.44884 kcal/mol@LB@@LB@Position - mRNA 22 -- 37@LB@Position - sRNA 14 -- 33@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 151 |
0.007423 |
0.1652 |
b2895 |
fldB |
-9.53 |
0.202764 |
191 -- 224 |
1 -- 31 |
flavodoxin 2 |
|
_____________190__________________________________225\n_____________|____________________________________|\n5'-CGG...CGAGA____UA____AUGAA_______CU_______A____UCCAG...AUA-3'\n______________AGCU__CGUU_____UAUGGGU____UUUUU_CGGU\n______________||||__|:||_____|||||||____|||||_|:|:\n______________UCGA__GUAA_____AUACCCA____AAAAA_GUCG\n3'-UUU...CCAUG____UC____A___________AUAC__________-5'\n_____________|___________________________________|\n_____________32__________________________________1\n |
206 -- 212 |
14 -- 20 |
-17.4845 kcal/mol |
6.4701 kcal/mol |
1.48722 kcal/mol |
190 225@LB@ | |@LB@5'-CGG...CGAGA UA AUGAA CU A UCCAG...AUA-3'@LB@ AGCU CGUU UAUGGGU UUUUU CGGU@LB@ |||| |:|| ||||||| ||||| |:|:@LB@ UCGA GUAA AUACCCA AAAAA GUCG@LB@3'-UUU...CCAUG UC A AUAC -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -17.4845 kcal/mol@LB@Unfolding Energy - mRNA 6.4701 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 191 -- 224@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 103 |
0.00377 |
0.123 |
b2922 |
yggE |
-10.91 |
0.111523 |
45 -- 69 |
24 -- 45 |
oxidative stress defense protein |
|
_____________44________________________70\n_____________|_________________________|\n5'-GCA...GUUAU_______AU__CCU___________AGAGA...CCG-3'\n______________GUGGUUU__UG___UGCAGCUGGCG\n______________||||||:__||___|:|||||:||:\n______________CACCAAG__AC___AUGUCGAUCGU\n3'-UUU...UCCUC_______G___C_____________AAAAU...UCG-5'\n_____________|_________________________|\n_____________46________________________23\n |
63 -- 69 |
24 -- 30 |
-26.0515 kcal/mol |
10.579 kcal/mol |
4.55794 kcal/mol |
44 70@LB@ | |@LB@5'-GCA...GUUAU AU CCU AGAGA...CCG-3'@LB@ GUGGUUU UG UGCAGCUGGCG@LB@ ||||||: || |:|||||:||:@LB@ CACCAAG AC AUGUCGAUCGU@LB@3'-UUU...UCCUC G C AAAAU...UCG-5'@LB@ | |@LB@ 46 23@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -26.0515 kcal/mol@LB@Unfolding Energy - mRNA 10.579 kcal/mol@LB@Unfolding Energy - sRNA 4.55794 kcal/mol@LB@@LB@Position - mRNA 45 -- 69@LB@Position - sRNA 24 -- 45@LB@Position Seed - mRNA 63 -- 69@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 68 |
0.001845 |
0.09081 |
b2957 |
ansB |
-14.03 |
0.020893 |
243 -- 268 |
22 -- 43 |
periplasmic L-asparaginase 2 |
|
_____________242________________________269\n_____________|__________________________|\n5'-AGC...UUAUG______AG_________AU_______ACCCA...GGA-3'\n______________GGUUUU__UGGUGCAGC__UGGCAUU\n______________||||::__||||:||||__|:|||||\n______________CCAAGG__ACCAUGUCG__AUCGUAA\n3'-UUU...CUCCA__________________________AAUAC...UCG-5'\n_____________|__________________________|\n_____________44_________________________21\n |
262 -- 268 |
22 -- 28 |
-26.4763 kcal/mol |
7.8858 kcal/mol |
4.55803 kcal/mol |
242 269@LB@ | |@LB@5'-AGC...UUAUG AG AU ACCCA...GGA-3'@LB@ GGUUUU UGGUGCAGC UGGCAUU@LB@ ||||:: ||||:|||| |:|||||@LB@ CCAAGG ACCAUGUCG AUCGUAA@LB@3'-UUU...CUCCA AAUAC...UCG-5'@LB@ | |@LB@ 44 21@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -26.4763 kcal/mol@LB@Unfolding Energy - mRNA 7.8858 kcal/mol@LB@Unfolding Energy - sRNA 4.55803 kcal/mol@LB@@LB@Position - mRNA 243 -- 268@LB@Position - sRNA 22 -- 43@LB@Position Seed - mRNA 262 -- 268@LB@Position Seed - sRNA 22 -- 28@LB@ |
