| 101 |
0.003756 |
0.123 |
b2972 |
pppA |
-13.47 |
0.029286 |
211 -- 222 |
1 -- 12 |
bifunctional prepilin leader peptidase/ methylase |
|
_____________210__________223\n_____________|____________|\n5'-UAA...UUUUG____________AAUAC...GGC-3'\n______________AUGUUUUUCAGC\n______________||||||||||||\n______________UACAAAAAGUCG\n3'-UUU...CCCAA____________-5'\n_____________|___________|\n_____________13__________1\n |
216 -- 222 |
1 -- 7 |
-17.018 kcal/mol |
2.64154 kcal/mol |
0.904394 kcal/mol |
210 223@LB@ | |@LB@5'-UAA...UUUUG AAUAC...GGC-3'@LB@ AUGUUUUUCAGC@LB@ ||||||||||||@LB@ UACAAAAAGUCG@LB@3'-UUU...CCCAA -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -13.47 kcal/mol@LB@Hybridization Energy -17.018 kcal/mol@LB@Unfolding Energy - mRNA 2.64154 kcal/mol@LB@Unfolding Energy - sRNA 0.904394 kcal/mol@LB@@LB@Position - mRNA 211 -- 222@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 135 |
0.005891 |
0.146 |
b3009 |
yghB |
-12.71 |
0.045213 |
257 -- 299 |
7 -- 46 |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
_____________256_________________________________________300\n_____________|___________________________________________|\n5'-UCU...GCGCU__C__A____CA___U_________GUUUACUUU__C______G-3'\n______________GG_GG_UCCU__UAU_GUUAGCGUU_________GU_AUGUUU\n______________||_||_||||__||:_|:||||:||_________||_||||||\n______________CC_CC_AGGA__AUG_CGAUCGUAA_________CA_UACAAA\n3'-UUU...UUCCU__A__A____CC___U_________AAUACC_____A______AAGUCG-5'\n_____________|___________________________________________|\n_____________47__________________________________________6\n |
275 -- 281 |
22 -- 28 |
-27.0814 kcal/mol |
9.76724 kcal/mol |
4.60844 kcal/mol |
256 300@LB@ | |@LB@5'-UCU...GCGCU C A CA U GUUUACUUU C G-3'@LB@ GG GG UCCU UAU GUUAGCGUU GU AUGUUU@LB@ || || |||| ||: |:||||:|| || ||||||@LB@ CC CC AGGA AUG CGAUCGUAA CA UACAAA@LB@3'-UUU...UUCCU A A CC U AAUACC A AAGUCG-5'@LB@ | |@LB@ 47 6@LB@@LB@@LB@Energy -12.71 kcal/mol@LB@Hybridization Energy -27.0814 kcal/mol@LB@Unfolding Energy - mRNA 9.76724 kcal/mol@LB@Unfolding Energy - sRNA 4.60844 kcal/mol@LB@@LB@Position - mRNA 257 -- 299@LB@Position - sRNA 7 -- 46@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 72 |
0.001945 |
0.09081 |
b3024 |
ygiW |
-9.51 |
0.204072 |
108 -- 126 |
18 -- 35 |
hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein |
|
_____________107_________________127\n_____________|___________________|\n5'-UGA...GCUCU_______ACUAA_______UUUUU...AAA-3'\n______________GUACAGC_____AUUUUAU\n______________|||||||_____|||||||\n______________CAUGUCG_____UAAAAUA\n3'-UUU...AGGAC_______AUCG________CCCAA...UCG-5'\n_____________|___________________|\n_____________36__________________17\n |
120 -- 126 |
18 -- 24 |
-13.5355 kcal/mol |
2.57979 kcal/mol |
1.44471 kcal/mol |
107 127@LB@ | |@LB@5'-UGA...GCUCU ACUAA UUUUU...AAA-3'@LB@ GUACAGC AUUUUAU@LB@ ||||||| |||||||@LB@ CAUGUCG UAAAAUA@LB@3'-UUU...AGGAC AUCG CCCAA...UCG-5'@LB@ | |@LB@ 36 17@LB@@LB@@LB@Energy -9.51 kcal/mol@LB@Hybridization Energy -13.5355 kcal/mol@LB@Unfolding Energy - mRNA 2.57979 kcal/mol@LB@Unfolding Energy - sRNA 1.44471 kcal/mol@LB@@LB@Position - mRNA 108 -- 126@LB@Position - sRNA 18 -- 35@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 49 |
0.001147 |
0.07744 |
b3039 |
ygiD |
-13.27 |
0.032900 |
280 -- 298 |
15 -- 33 |
4 5- DOPA-extradiol-dioxygenase |
|
_____________279_________________299\n_____________|___________________|\n5'-ACG...UACCC__________GAAGU____GA-3'\n______________GCAGCUGGCA_____UGGG\n______________:|||||:|||_____||||\n______________UGUCGAUCGU_____ACCC\n3'-UUU...GACCA__________AAAAU____AAUAC...UCG-5'\n_____________|___________________|\n_____________34__________________14\n |
283 -- 289 |
24 -- 30 |
-23.43 kcal/mol |
8.71058 kcal/mol |
1.44754 kcal/mol |
279 299@LB@ | |@LB@5'-ACG...UACCC GAAGU GA-3'@LB@ GCAGCUGGCA UGGG@LB@ :|||||:||| ||||@LB@ UGUCGAUCGU ACCC@LB@3'-UUU...GACCA AAAAU AAUAC...UCG-5'@LB@ | |@LB@ 34 14@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -23.43 kcal/mol@LB@Unfolding Energy - mRNA 8.71058 kcal/mol@LB@Unfolding Energy - sRNA 1.44754 kcal/mol@LB@@LB@Position - mRNA 280 -- 298@LB@Position - sRNA 15 -- 33@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 77 |
0.002255 |
0.09621 |
b3052 |
hldE |
-16.16 |
0.004835 |
103 -- 144 |
10 -- 48 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________102___________________________________________145\n_____________|_____________________________________________|\n5'-GCG...CCGCA___C___AA_________GGGCA________GAA_____CUG___GAAGA...CGC-3'\n______________GAG_GUG____CUGGUGC_____AGCUGGCA____GUGG___GUG\n______________|||_|||____|||||:|_____||||:|||____:|||___:||\n______________CUC_CAC____GACCAUG_____UCGAUCGU____UACC___UAC\n3'-UUU...GAUUC_______CAAG____________________AAAA____CAA___AAAAA...UCG-5'\n_____________|_____________________________________________|\n_____________49____________________________________________9\n |
125 -- 131 |
24 -- 30 |
-34.5885 kcal/mol |
13.822 kcal/mol |
4.60637 kcal/mol |
102 145@LB@ | |@LB@5'-GCG...CCGCA C AA GGGCA GAA CUG GAAGA...CGC-3'@LB@ GAG GUG CUGGUGC AGCUGGCA GUGG GUG@LB@ ||| ||| |||||:| ||||:||| :||| :||@LB@ CUC CAC GACCAUG UCGAUCGU UACC UAC@LB@3'-UUU...GAUUC CAAG AAAA CAA AAAAA...UCG-5'@LB@ | |@LB@ 49 9@LB@@LB@@LB@Energy -16.16 kcal/mol@LB@Hybridization Energy -34.5885 kcal/mol@LB@Unfolding Energy - mRNA 13.822 kcal/mol@LB@Unfolding Energy - sRNA 4.60637 kcal/mol@LB@@LB@Position - mRNA 103 -- 144@LB@Position - sRNA 10 -- 48@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 43 |
0.0008959 |
0.07003 |
b3068 |
mug |
-12.52 |
0.050096 |
232 -- 248 |
1 -- 17 |
G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase |
|
_____________231_______________249\n_____________|_________________|\n5'-UGG...GUUAC____C_______G____AUCAA...CGG-3'\n______________GGGU_GUGUUUU_CGGU\n______________||||_:||||||_|:|:\n______________CCCA_UACAAAA_GUCG\n3'-UUU...AAAUA____A_______A____-5'\n_____________|________________|\n_____________18_______________1\n |
237 -- 243 |
6 -- 12 |
-17.5569 kcal/mol |
4.10869 kcal/mol |
0.931609 kcal/mol |
231 249@LB@ | |@LB@5'-UGG...GUUAC C G AUCAA...CGG-3'@LB@ GGGU GUGUUUU CGGU@LB@ |||| :|||||| |:|:@LB@ CCCA UACAAAA GUCG@LB@3'-UUU...AAAUA A A -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -12.52 kcal/mol@LB@Hybridization Energy -17.5569 kcal/mol@LB@Unfolding Energy - mRNA 4.10869 kcal/mol@LB@Unfolding Energy - sRNA 0.931609 kcal/mol@LB@@LB@Position - mRNA 232 -- 248@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 131 |
0.005571 |
0.1429 |
b3102 |
yqjG |
-9.67 |
0.191738 |
57 -- 77 |
24 -- 46 |
putative S-transferase |
|
_____________56_______________________78\n_____________|________________________|\n5'-GCA...UUUCU__C__A______CU__________AUUAC...GGC-3'\n______________GG_GG_UUCCUG_____GCUGGCA\n______________||_||_||||||_____|||:|||\n______________CC_CC_AAGGAC_____CGAUCGU\n3'-UUU...UUCCU__A_________CAUGU_______AAAAU...UCG-5'\n_____________|________________________|\n_____________47_______________________23\n |
71 -- 77 |
24 -- 30 |
-24.338 kcal/mol |
10.1138 kcal/mol |
4.55813 kcal/mol |
56 78@LB@ | |@LB@5'-GCA...UUUCU C A CU AUUAC...GGC-3'@LB@ GG GG UUCCUG GCUGGCA@LB@ || || |||||| |||:|||@LB@ CC CC AAGGAC CGAUCGU@LB@3'-UUU...UUCCU A CAUGU AAAAU...UCG-5'@LB@ | |@LB@ 47 23@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -24.338 kcal/mol@LB@Unfolding Energy - mRNA 10.1138 kcal/mol@LB@Unfolding Energy - sRNA 4.55813 kcal/mol@LB@@LB@Position - mRNA 57 -- 77@LB@Position - sRNA 24 -- 46@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 168 |
0.00897 |
0.1795 |
b3139 |
agaC |
-13.68 |
0.025868 |
233 -- 273 |
1 -- 39 |
N-acetylgalactosamine-specific enzyme IIC component of PTS |
|
_____________232________________________________________274\n_____________|__________________________________________|\n5'-AAC...UUAUC_____CG_________U___GUUC____GAU__A________UGGAA...CGA-3'\n______________CCUGG__GC_GUUAGU_UUU____UGGG___UG_UUUUUGGC\n______________|||||__:|_|:|||:_|||____||||___||_||||::||\n______________GGACC__UG_CGAUCG_AAA____ACCC___AC_AAAAGUCG\n3'-UUU...ACCAA_____A___U______U___AU______AAU__A________-5'\n_____________|_________________________________________|\n_____________40________________________________________1\n |
267 -- 273 |
1 -- 7 |
-31.3276 kcal/mol |
13.0397 kcal/mol |
4.60651 kcal/mol |
232 274@LB@ | |@LB@5'-AAC...UUAUC CG U GUUC GAU A UGGAA...CGA-3'@LB@ CCUGG GC GUUAGU UUU UGGG UG UUUUUGGC@LB@ ||||| :| |:|||: ||| |||| || ||||::||@LB@ GGACC UG CGAUCG AAA ACCC AC AAAAGUCG@LB@3'-UUU...ACCAA A U U AU AAU A -5'@LB@ | |@LB@ 40 1@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -31.3276 kcal/mol@LB@Unfolding Energy - mRNA 13.0397 kcal/mol@LB@Unfolding Energy - sRNA 4.60651 kcal/mol@LB@@LB@Position - mRNA 233 -- 273@LB@Position - sRNA 1 -- 39@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 142 |
0.006672 |
0.1579 |
b3168 |
infB |
-12.04 |
0.064271 |
249 -- 267 |
29 -- 45 |
translation initiation factor IF-2 |
|
_____________248_________________268\n_____________|___________________|\n5'-AAG...CCUCC____AACG___________AAUUU...CUG-3'\n______________GUGG____CCUGGUACAGC\n______________||||____|||||||||||\n______________CACC____GGACCAUGUCG\n3'-UUU...UCCUC____AA_____________AUCGU...UCG-5'\n_____________|___________________|\n_____________46__________________28\n |
261 -- 267 |
29 -- 35 |
-27.2517 kcal/mol |
10.9083 kcal/mol |
4.30037 kcal/mol |
248 268@LB@ | |@LB@5'-AAG...CCUCC AACG AAUUU...CUG-3'@LB@ GUGG CCUGGUACAGC@LB@ |||| |||||||||||@LB@ CACC GGACCAUGUCG@LB@3'-UUU...UCCUC AA AUCGU...UCG-5'@LB@ | |@LB@ 46 28@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -27.2517 kcal/mol@LB@Unfolding Energy - mRNA 10.9083 kcal/mol@LB@Unfolding Energy - sRNA 4.30037 kcal/mol@LB@@LB@Position - mRNA 249 -- 267@LB@Position - sRNA 29 -- 45@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 124 |
0.00526 |
0.1416 |
b3170 |
rimP |
-10.72 |
0.121991 |
191 -- 217 |
24 -- 49 |
ribosome maturation factor for 30S subunits |
|
_____________190__________________________218\n_____________|____________________________|\n5'-CUU...GUCUU________G_____UCC___UUAG____AAAAU...CAU-3'\n______________GGGGGUGG__CUUG___ACA____AGCA\n______________||:|||||__|:||___|||____||||\n______________CCUCCACC__GGAC___UGU____UCGU\n3'-UUU...CGAUU________AA____CA____CGA_____AAAAU...UCG-5'\n_____________|____________________________|\n_____________50___________________________23\n |
192 -- 198 |
42 -- 48 |
-23.9554 kcal/mol |
8.6777 kcal/mol |
4.5591 kcal/mol |
190 218@LB@ | |@LB@5'-CUU...GUCUU G UCC UUAG AAAAU...CAU-3'@LB@ GGGGGUGG CUUG ACA AGCA@LB@ ||:||||| |:|| ||| ||||@LB@ CCUCCACC GGAC UGU UCGU@LB@3'-UUU...CGAUU AA CA CGA AAAAU...UCG-5'@LB@ | |@LB@ 50 23@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -23.9554 kcal/mol@LB@Unfolding Energy - mRNA 8.6777 kcal/mol@LB@Unfolding Energy - sRNA 4.5591 kcal/mol@LB@@LB@Position - mRNA 191 -- 217@LB@Position - sRNA 24 -- 49@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 42 -- 48@LB@ |
