| 153 |
0.00769 |
0.1686 |
b3292 |
zntR |
-12.84 |
0.042049 |
212 -- 231 |
16 -- 37 |
zntA gene transcriptional activator |
|
_____________211____________________232\n_____________|______________________|\n5'-UGA...CGCAU______________AAA_____CGGAA...CUG-3'\n______________UGGUG_AGCUGGCA____AUGG\n______________||||:_||||:|||____||||\n______________ACCAU_UCGAUCGU____UACC\n3'-UUU...CAAGG_____G________AAAA____CAAUA...UCG-5'\n_____________|______________________|\n_____________38_____________________15\n |
218 -- 224 |
24 -- 30 |
-20.2277 kcal/mol |
4.73271 kcal/mol |
2.65753 kcal/mol |
211 232@LB@ | |@LB@5'-UGA...CGCAU AAA CGGAA...CUG-3'@LB@ UGGUG AGCUGGCA AUGG@LB@ ||||: ||||:||| ||||@LB@ ACCAU UCGAUCGU UACC@LB@3'-UUU...CAAGG G AAAA CAAUA...UCG-5'@LB@ | |@LB@ 38 15@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -20.2277 kcal/mol@LB@Unfolding Energy - mRNA 4.73271 kcal/mol@LB@Unfolding Energy - sRNA 2.65753 kcal/mol@LB@@LB@Position - mRNA 212 -- 231@LB@Position - sRNA 16 -- 37@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 8 |
1.749e-05 |
0.007346 |
b3294 |
rplQ |
-17.07 |
0.002316 |
5 -- 20 |
29 -- 46 |
50S ribosomal subunit protein L17 |
|
_____________4__________________21\n_____________|__________________|\n_______5'-UAUC____A_____________GUACC...UCA-3'\n______________GGUG___UCUGGUACAGC\n______________||||___:||||||||||\n______________CCAC___GGACCAUGUCG\n3'-UUU...UUCCU____CAA___________AUCGU...UCG-5'\n_____________|__________________|\n_____________47_________________28\n |
14 -- 20 |
29 -- 35 |
-24.8218 kcal/mol |
3.44934 kcal/mol |
4.30059 kcal/mol |
4 21@LB@ | |@LB@ 5'-UAUC A GUACC...UCA-3'@LB@ GGUG UCUGGUACAGC@LB@ |||| :||||||||||@LB@ CCAC GGACCAUGUCG@LB@3'-UUU...UUCCU CAA AUCGU...UCG-5'@LB@ | |@LB@ 47 28@LB@@LB@@LB@Energy -17.07 kcal/mol@LB@Hybridization Energy -24.8218 kcal/mol@LB@Unfolding Energy - mRNA 3.44934 kcal/mol@LB@Unfolding Energy - sRNA 4.30059 kcal/mol@LB@@LB@Position - mRNA 5 -- 20@LB@Position - sRNA 29 -- 46@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 95 |
0.003283 |
0.1162 |
b3298 |
rpsM |
-13.37 |
0.031144 |
190 -- 221 |
22 -- 50 |
30S ribosomal subunit protein S13 |
|
_____________189_________________________________222\n_____________|___________________________________|\n5'-GUC...AUAGU_____UGCAUA____C____________A______AACAU...UCC-3'\n______________AGGAG______GUGG__CC__GUAUAGC_GGCAUU\n______________|||||______||||__||__|||:|||_:|||||\n______________UCCUC______CACC__GG__CAUGUCG_UCGUAA\n3'-UUU...CCGAU_______________AA__AC_______A______AAUAC...UCG-5'\n_____________|___________________________________|\n_____________51__________________________________21\n |
208 -- 214 |
29 -- 35 |
-26.0998 kcal/mol |
8.11911 kcal/mol |
4.61397 kcal/mol |
189 222@LB@ | |@LB@5'-GUC...AUAGU UGCAUA C A AACAU...UCC-3'@LB@ AGGAG GUGG CC GUAUAGC GGCAUU@LB@ ||||| |||| || |||:||| :|||||@LB@ UCCUC CACC GG CAUGUCG UCGUAA@LB@3'-UUU...CCGAU AA AC A AAUAC...UCG-5'@LB@ | |@LB@ 51 21@LB@@LB@@LB@Energy -13.37 kcal/mol@LB@Hybridization Energy -26.0998 kcal/mol@LB@Unfolding Energy - mRNA 8.11911 kcal/mol@LB@Unfolding Energy - sRNA 4.61397 kcal/mol@LB@@LB@Position - mRNA 190 -- 221@LB@Position - sRNA 22 -- 50@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 34 |
0.0006341 |
0.06268 |
b3312 |
rpmC |
-15.21 |
0.009642 |
105 -- 128 |
25 -- 49 |
50S ribosomal subunit protein L29 |
|
_____________104________________________129\n_____________|__________________________|\n5'-AAA...GAAAU___C____________A_G_______CCGUG...CAA-3'\n______________GGA_GGU_GUUCC_GG_A_AGCUGGC\n______________|||_|||_|||||_||_|_||||:||\n______________CCU_CCA_CAAGG_CC_U_UCGAUCG\n3'-UUU...CGAUU_______C_____A__A_G_______UAAAA...UCG-5'\n_____________|__________________________|\n_____________50_________________________24\n |
122 -- 128 |
25 -- 31 |
-29.6215 kcal/mol |
9.85059 kcal/mol |
4.5577 kcal/mol |
104 129@LB@ | |@LB@5'-AAA...GAAAU C A G CCGUG...CAA-3'@LB@ GGA GGU GUUCC GG A AGCUGGC@LB@ ||| ||| ||||| || | ||||:||@LB@ CCU CCA CAAGG CC U UCGAUCG@LB@3'-UUU...CGAUU C A A G UAAAA...UCG-5'@LB@ | |@LB@ 50 24@LB@@LB@@LB@Energy -15.21 kcal/mol@LB@Hybridization Energy -29.6215 kcal/mol@LB@Unfolding Energy - mRNA 9.85059 kcal/mol@LB@Unfolding Energy - sRNA 4.5577 kcal/mol@LB@@LB@Position - mRNA 105 -- 128@LB@Position - sRNA 25 -- 49@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 90 |
0.002979 |
0.1113 |
b3328 |
gspG |
-12.13 |
0.061461 |
284 -- 293 |
37 -- 46 |
pseudopilin cryptic general secretion pathway |
|
_____________283________294\n_____________|__________|\n5'-AAA...AGCCU__________AACCUAA-3'\n______________GGUGGUUCCU\n______________||||||||||\n______________CCACCAAGGA\n3'-UUU...UUCCU__________CCAUG...UCG-5'\n_____________|__________|\n_____________47_________36\n |
287 -- 293 |
37 -- 43 |
-18.4741 kcal/mol |
3.21142 kcal/mol |
3.13317 kcal/mol |
283 294@LB@ | |@LB@5'-AAA...AGCCU AACCUAA-3'@LB@ GGUGGUUCCU@LB@ ||||||||||@LB@ CCACCAAGGA@LB@3'-UUU...UUCCU CCAUG...UCG-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -12.13 kcal/mol@LB@Hybridization Energy -18.4741 kcal/mol@LB@Unfolding Energy - mRNA 3.21142 kcal/mol@LB@Unfolding Energy - sRNA 3.13317 kcal/mol@LB@@LB@Position - mRNA 284 -- 293@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 160 |
0.008086 |
0.1694 |
b3350 |
kefB |
-10.41 |
0.139805 |
251 -- 273 |
23 -- 46 |
potassium:proton antiporter |
|
_____________250______________________274\n_____________|________________________|\n5'-UAC...GCGGC_____C_G_______C________CGCGG...UGG-3'\n______________GGUGG_U_C_GGUGC_GCUGGCAU\n______________|||||_|_|_|||:|_|||:||||\n______________CCACC_A_G_CCAUG_CGAUCGUA\n3'-UUU...UUCCU_____A_G_A_____U________AAAUA...UCG-5'\n_____________|________________________|\n_____________47_______________________22\n |
267 -- 273 |
23 -- 29 |
-29.1074 kcal/mol |
14.1356 kcal/mol |
4.5585 kcal/mol |
250 274@LB@ | |@LB@5'-UAC...GCGGC C G C CGCGG...UGG-3'@LB@ GGUGG U C GGUGC GCUGGCAU@LB@ ||||| | | |||:| |||:||||@LB@ CCACC A G CCAUG CGAUCGUA@LB@3'-UUU...UUCCU A G A U AAAUA...UCG-5'@LB@ | |@LB@ 47 22@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -29.1074 kcal/mol@LB@Unfolding Energy - mRNA 14.1356 kcal/mol@LB@Unfolding Energy - sRNA 4.5585 kcal/mol@LB@@LB@Position - mRNA 251 -- 273@LB@Position - sRNA 23 -- 46@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 96 |
0.003358 |
0.117 |
b3367 |
nirC |
-13.97 |
0.021706 |
56 -- 81 |
6 -- 37 |
nitrite transporter |
|
_____________55_________________________________82\n_____________|__________________________________|\n5'-AUG...CGGCG___________C______________A_______AACGG...UGG-3'\n______________UGGUGCAGCUG_GC________GGUU_AUGUUUU\n______________||||:|||||:_||________||||_|||||||\n______________ACCAUGUCGAU_CG________CCAA_UACAAAA\n3'-UUU...CAAGG______________UAAAAUAC____________AGUCG-5'\n_____________|__________________________________|\n_____________38_________________________________5\n |
75 -- 81 |
6 -- 12 |
-26.6239 kcal/mol |
9.95316 kcal/mol |
2.70019 kcal/mol |
55 82@LB@ | |@LB@5'-AUG...CGGCG C A AACGG...UGG-3'@LB@ UGGUGCAGCUG GC GGUU AUGUUUU@LB@ ||||:|||||: || |||| |||||||@LB@ ACCAUGUCGAU CG CCAA UACAAAA@LB@3'-UUU...CAAGG UAAAAUAC AGUCG-5'@LB@ | |@LB@ 38 5@LB@@LB@@LB@Energy -13.97 kcal/mol@LB@Hybridization Energy -26.6239 kcal/mol@LB@Unfolding Energy - mRNA 9.95316 kcal/mol@LB@Unfolding Energy - sRNA 2.70019 kcal/mol@LB@@LB@Position - mRNA 56 -- 81@LB@Position - sRNA 6 -- 37@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 29 |
0.0004753 |
0.05348 |
b3412 |
bioH |
-14.38 |
0.016792 |
146 -- 163 |
23 -- 40 |
pimeloyl-ACP methyl ester carboxylesterase |
|
_____________145________________164\n_____________|__________________|\n5'-GGC...CAUAA___C_____U________AUGUU...ACG-3'\n______________UCC_GGUAC_GUUAGCAU\n______________|||_|||||_|:||||||\n______________AGG_CCAUG_CGAUCGUA\n3'-UUU...CACCA___A_____U________AAAUA...UCG-5'\n_____________|__________________|\n_____________41_________________22\n |
157 -- 163 |
23 -- 29 |
-23.5076 kcal/mol |
4.57199 kcal/mol |
4.55554 kcal/mol |
145 164@LB@ | |@LB@5'-GGC...CAUAA C U AUGUU...ACG-3'@LB@ UCC GGUAC GUUAGCAU@LB@ ||| ||||| |:||||||@LB@ AGG CCAUG CGAUCGUA@LB@3'-UUU...CACCA A U AAAUA...UCG-5'@LB@ | |@LB@ 41 22@LB@@LB@@LB@Energy -14.38 kcal/mol@LB@Hybridization Energy -23.5076 kcal/mol@LB@Unfolding Energy - mRNA 4.57199 kcal/mol@LB@Unfolding Energy - sRNA 4.55554 kcal/mol@LB@@LB@Position - mRNA 146 -- 163@LB@Position - sRNA 23 -- 40@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 16 |
0.000101 |
0.02121 |
b3428 |
glgP |
-10.27 |
0.148738 |
91 -- 131 |
1 -- 46 |
glycogen phosphorylase |
|
_____________90_____________________________________________132\n_____________|______________________________________________|\n5'-CCA...ACUGU__C_____G__CA___UCA____________CA____GA_______UGGCA...CGG-3'\n______________GG_GGUUU_UG__ACG___GGC____UAUGG___AUG__UUUUAGC\n______________||_||||:_||__||:___:||____|||||___|||__|||:|||\n______________CC_CCAAG_AC__UGU___UCG____AUACC___UAC__AAAGUCG\n3'-UUU...UUCCU__A_____G__CA___CGA___UAAA_____CAA___AA_______-5'\n_____________|_____________________________________________|\n_____________47____________________________________________1\n |
125 -- 131 |
1 -- 7 |
-28.7783 kcal/mol |
13.8975 kcal/mol |
4.60935 kcal/mol |
90 132@LB@ | |@LB@5'-CCA...ACUGU C G CA UCA CA GA UGGCA...CGG-3'@LB@ GG GGUUU UG ACG GGC UAUGG AUG UUUUAGC@LB@ || ||||: || ||: :|| ||||| ||| |||:|||@LB@ CC CCAAG AC UGU UCG AUACC UAC AAAGUCG@LB@3'-UUU...UUCCU A G CA CGA UAAA CAA AA -5'@LB@ | |@LB@ 47 1@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -28.7783 kcal/mol@LB@Unfolding Energy - mRNA 13.8975 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 91 -- 131@LB@Position - sRNA 1 -- 46@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 44 |
0.0009392 |
0.07174 |
b3453 |
ugpB |
-12.21 |
0.059079 |
239 -- 268 |
1 -- 32 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________238_______________________________269\n_____________|_________________________________|\n5'-UUC...GCGCU___A________A______GA___CACA_____AGUGA...UGG-3'\n______________CGG_CUGGCGUU__AUGGG__AUG______GGC\n______________|:|_||:||:||__|||||__|||______:||\n______________GUC_GAUCGUAA__UACCC__UAC______UCG\n3'-UUU...ACCAU____________AA_____AA___AAAAAG___-5'\n_____________|________________________________|\n_____________33_______________________________1\n |
244 -- 250 |
22 -- 28 |
-24.6308 kcal/mol |
10.9347 kcal/mol |
1.49075 kcal/mol |
238 269@LB@ | |@LB@5'-UUC...GCGCU A A GA CACA AGUGA...UGG-3'@LB@ CGG CUGGCGUU AUGGG AUG GGC@LB@ |:| ||:||:|| ||||| ||| :||@LB@ GUC GAUCGUAA UACCC UAC UCG@LB@3'-UUU...ACCAU AA AA AAAAAG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -12.21 kcal/mol@LB@Hybridization Energy -24.6308 kcal/mol@LB@Unfolding Energy - mRNA 10.9347 kcal/mol@LB@Unfolding Energy - sRNA 1.49075 kcal/mol@LB@@LB@Position - mRNA 239 -- 268@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 22 -- 28@LB@ |
