| 108 |
0.004185 |
0.1296 |
b2158 |
yeiH |
-13.47 |
0.029300 |
232 -- 260 |
12 -- 35 |
UPF0324 family inner membrane protein |
|
_____________231___________________________261\n_____________|_____________________________|\n5'-CAC...ACAUC_____CUG___________UCCG______GCCCU...GUG-3'\n______________GUACA___UGGCAUUUUAU____GGGUUA\n______________|||||___|:|||||||||____||||||\n______________CAUGU___AUCGUAAAAUA____CCCAAU\n3'-UUU...AGGAC_____CG______________________ACAAA...UCG-5'\n_____________|_____________________________|\n_____________36____________________________11\n |
244 -- 250 |
18 -- 24 |
-22.9966 kcal/mol |
8.07046 kcal/mol |
1.45491 kcal/mol |
231 261@LB@ | |@LB@5'-CAC...ACAUC CUG UCCG GCCCU...GUG-3'@LB@ GUACA UGGCAUUUUAU GGGUUA@LB@ ||||| |:||||||||| ||||||@LB@ CAUGU AUCGUAAAAUA CCCAAU@LB@3'-UUU...AGGAC CG ACAAA...UCG-5'@LB@ | |@LB@ 36 11@LB@@LB@@LB@Energy -13.47 kcal/mol@LB@Hybridization Energy -22.9966 kcal/mol@LB@Unfolding Energy - mRNA 8.07046 kcal/mol@LB@Unfolding Energy - sRNA 1.45491 kcal/mol@LB@@LB@Position - mRNA 232 -- 260@LB@Position - sRNA 12 -- 35@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 107 |
0.004137 |
0.1296 |
b2164 |
psuT |
-12.74 |
0.044381 |
225 -- 254 |
21 -- 50 |
putative nucleoside transporter |
b2161 |
_____________224_______________________________255\n_____________|_________________________________|\n5'-CUG...UUGUG____U______GUUA________A_________CUGUU...GAG-3'\n______________GGGA_GGUGGU____CUGG__CA__UAGCAUUU\n______________:|||_||||||____||||__||__||||||||\n______________UCCU_CCACCA____GACC__GU__AUCGUAAA\n3'-UUU...CCGAU___________AG______AU__CG________AUACC...UCG-5'\n_____________|_________________________________|\n_____________51________________________________20\n |
248 -- 254 |
21 -- 27 |
-28.746 kcal/mol |
11.392 kcal/mol |
4.61445 kcal/mol |
224 255@LB@ | |@LB@5'-CUG...UUGUG U GUUA A CUGUU...GAG-3'@LB@ GGGA GGUGGU CUGG CA UAGCAUUU@LB@ :||| |||||| |||| || ||||||||@LB@ UCCU CCACCA GACC GU AUCGUAAA@LB@3'-UUU...CCGAU AG AU CG AUACC...UCG-5'@LB@ | |@LB@ 51 20@LB@@LB@@LB@Energy -12.74 kcal/mol@LB@Hybridization Energy -28.746 kcal/mol@LB@Unfolding Energy - mRNA 11.392 kcal/mol@LB@Unfolding Energy - sRNA 4.61445 kcal/mol@LB@@LB@Position - mRNA 225 -- 254@LB@Position - sRNA 21 -- 50@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 51 |
0.001198 |
0.07744 |
b2174 |
lpxT |
-10.53 |
0.132559 |
260 -- 270 |
31 -- 41 |
lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase |
|
_____________259_________271\n_____________|___________|\n5'-GAA...UUUCU___________UCCCC...CGA-3'\n______________UUCCUGGUAUA\n______________|||||||||:|\n______________AAGGACCAUGU\n3'-UUU...CCACC___________CGAUC...UCG-5'\n_____________|___________|\n_____________42__________30\n |
264 -- 270 |
31 -- 37 |
-15.7095 kcal/mol |
1.92057 kcal/mol |
3.2552 kcal/mol |
259 271@LB@ | |@LB@5'-GAA...UUUCU UCCCC...CGA-3'@LB@ UUCCUGGUAUA@LB@ |||||||||:|@LB@ AAGGACCAUGU@LB@3'-UUU...CCACC CGAUC...UCG-5'@LB@ | |@LB@ 42 30@LB@@LB@@LB@Energy -10.53 kcal/mol@LB@Hybridization Energy -15.7095 kcal/mol@LB@Unfolding Energy - mRNA 1.92057 kcal/mol@LB@Unfolding Energy - sRNA 3.2552 kcal/mol@LB@@LB@Position - mRNA 260 -- 270@LB@Position - sRNA 31 -- 41@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 184 |
0.01055 |
0.1919 |
b2175 |
mepS |
-11.10 |
0.102353 |
43 -- 84 |
9 -- 46 |
murein DD-endopeptidase space-maker hydrolase mutational suppressor of prc thermosensitivity outer membrane lipoprotein weak murein LD-carboxypeptidase |
|
_____________42____________________________________________85\n_____________|_____________________________________________|\n5'-CAA...GCCUC__C___AGAUUA____C_______A__UA________C_______CCACA...CAA-3'\n______________GG_GGU______UCCU___ACAGC_UA__AUUUUGUG_GUUA_GU\n______________||_|||______||||___|||||_||__|||||:||_||||_||\n______________CC_CCA______AGGA___UGUCG_AU__UAAAAUAC_CAAU_CA\n3'-UUU...UUCCU__A_____________CCA________CG________C____A__AAAAGUCG-5'\n_____________|_____________________________________________|\n_____________47____________________________________________8\n |
71 -- 77 |
17 -- 23 |
-25.0471 kcal/mol |
9.34223 kcal/mol |
4.60648 kcal/mol |
42 85@LB@ | |@LB@5'-CAA...GCCUC C AGAUUA C A UA C CCACA...CAA-3'@LB@ GG GGU UCCU ACAGC UA AUUUUGUG GUUA GU@LB@ || ||| |||| ||||| || |||||:|| |||| ||@LB@ CC CCA AGGA UGUCG AU UAAAAUAC CAAU CA@LB@3'-UUU...UUCCU A CCA CG C A AAAAGUCG-5'@LB@ | |@LB@ 47 8@LB@@LB@@LB@Energy -11.10 kcal/mol@LB@Hybridization Energy -25.0471 kcal/mol@LB@Unfolding Energy - mRNA 9.34223 kcal/mol@LB@Unfolding Energy - sRNA 4.60648 kcal/mol@LB@@LB@Position - mRNA 43 -- 84@LB@Position - sRNA 9 -- 46@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 52 |
0.001222 |
0.07744 |
b2217 |
rcsB |
-14.74 |
0.013297 |
68 -- 91 |
9 -- 38 |
response regulator in two-component regulatory system with RcsC and YojN |
|
_____________67_______________________________92\n_____________|________________________________|\n5'-AAC...UAAAU_______CC___A___________________GAAAC...GCG-3'\n______________CUGGUAC__GGC_AGCA________GUUAUGU\n______________|||||||__:||_||||________|||||||\n______________GACCAUG__UCG_UCGU________CAAUACA\n3'-UUU...CCAAG____________A____AAAAUACC_______AAAAGUCG-5'\n_____________|________________________________|\n_____________39_______________________________8\n |
85 -- 91 |
9 -- 15 |
-24.0406 kcal/mol |
4.76673 kcal/mol |
4.53501 kcal/mol |
67 92@LB@ | |@LB@5'-AAC...UAAAU CC A GAAAC...GCG-3'@LB@ CUGGUAC GGC AGCA GUUAUGU@LB@ ||||||| :|| |||| |||||||@LB@ GACCAUG UCG UCGU CAAUACA@LB@3'-UUU...CCAAG A AAAAUACC AAAAGUCG-5'@LB@ | |@LB@ 39 8@LB@@LB@@LB@Energy -14.74 kcal/mol@LB@Hybridization Energy -24.0406 kcal/mol@LB@Unfolding Energy - mRNA 4.76673 kcal/mol@LB@Unfolding Energy - sRNA 4.53501 kcal/mol@LB@@LB@Position - mRNA 68 -- 91@LB@Position - sRNA 9 -- 38@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 155 |
0.007835 |
0.1694 |
b2239 |
glpQ |
-10.90 |
0.112133 |
59 -- 106 |
1 -- 45 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________58________________________________________________107\n_____________|_________________________________________________|\n5'-CGG...ACACC____AC_____C__CUG__A_____GC_______UA____A__GG____AGCAU...UCA-3'\n______________GUGG__UUCUU_GG___GG_UGGCG__UUUAUGG___AUG_UU__CGGC\n______________||||__|||:|_||___:|_|:||:__|||||||___|||_||__|:||\n______________CACC__AAGGA_CC___UC_AUCGU__AAAUACC___UAC_AA__GUCG\n3'-UUU...UCCUC______________AUG__G_____A________CAA___A__AA____-5'\n_____________|________________________________________________|\n_____________46_______________________________________________1\n |
86 -- 92 |
16 -- 22 |
-29.5358 kcal/mol |
14.0238 kcal/mol |
4.60935 kcal/mol |
58 107@LB@ | |@LB@5'-CGG...ACACC AC C CUG A GC UA A GG AGCAU...UCA-3'@LB@ GUGG UUCUU GG GG UGGCG UUUAUGG AUG UU CGGC@LB@ |||| |||:| || :| |:||: ||||||| ||| || |:||@LB@ CACC AAGGA CC UC AUCGU AAAUACC UAC AA GUCG@LB@3'-UUU...UCCUC AUG G A CAA A AA -5'@LB@ | |@LB@ 46 1@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -29.5358 kcal/mol@LB@Unfolding Energy - mRNA 14.0238 kcal/mol@LB@Unfolding Energy - sRNA 4.60935 kcal/mol@LB@@LB@Position - mRNA 59 -- 106@LB@Position - sRNA 1 -- 45@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 116 |
0.004845 |
0.1404 |
b2277 |
nuoM |
-9.49 |
0.205960 |
1 -- 40 |
8 -- 43 |
NADH:ubiquinone oxidoreductase membrane subunit M |
|
______________1___________________________________________41\n______________|___________________________________________|\n___________5'-_____G______________CUGUUG____UACUGC____A___AAGGA...UGA-3'\n______________GG_UC_UGGU___GCUGGCA______AUGG______GUUG_GUU\n______________||_||_||||___|||:|||______||||______|||:_|||\n______________CC_AG_ACCA___CGAUCGU______UACC______CAAU_CAA\n3'-UUU...CUCCA__A__G____UGU_______AAAA________________A___AAAGUCG-5'\n_____________|____________________________________________|\n_____________44___________________________________________7\n |
10 -- 16 |
24 -- 30 |
-25.9982 kcal/mol |
11.9029 kcal/mol |
4.60748 kcal/mol |
1 41@LB@ | |@LB@ 5'- G CUGUUG UACUGC A AAGGA...UGA-3'@LB@ GG UC UGGU GCUGGCA AUGG GUUG GUU@LB@ || || |||| |||:||| |||| |||: |||@LB@ CC AG ACCA CGAUCGU UACC CAAU CAA@LB@3'-UUU...CUCCA A G UGU AAAA A AAAGUCG-5'@LB@ | |@LB@ 44 7@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -25.9982 kcal/mol@LB@Unfolding Energy - mRNA 11.9029 kcal/mol@LB@Unfolding Energy - sRNA 4.60748 kcal/mol@LB@@LB@Position - mRNA 1 -- 40@LB@Position - sRNA 8 -- 43@LB@Position Seed - mRNA 10 -- 16@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 100 |
0.003656 |
0.1229 |
b2287 |
nuoB |
-12.04 |
0.064387 |
31 -- 70 |
8 -- 47 |
NADH:ubiquinone oxidoreductase chain B |
|
_____________30___________________________________________71\n_____________|____________________________________________|\n5'-CAU...CGGCU____A__C___G___A__________AU______UU________ACUGG...UUA-3'\n______________GGGU_GG_UUU_UGG___AGCU_GCA__UUUUAU___UUGUGUU\n______________:|||_||_||:_|||___||||_|||__||||||___||:||||\n______________UCCA_CC_AAG_ACC___UCGA_CGU__AAAAUA___AAUACAA\n3'-UUU...AUUCC___________G___AUG____U___________CCC_______AAAGUCG-5'\n_____________|____________________________________________|\n_____________48___________________________________________7\n |
64 -- 70 |
8 -- 14 |
-25.7516 kcal/mol |
9.10307 kcal/mol |
4.60908 kcal/mol |
30 71@LB@ | |@LB@5'-CAU...CGGCU A C G A AU UU ACUGG...UUA-3'@LB@ GGGU GG UUU UGG AGCU GCA UUUUAU UUGUGUU@LB@ :||| || ||: ||| |||| ||| |||||| ||:||||@LB@ UCCA CC AAG ACC UCGA CGU AAAAUA AAUACAA@LB@3'-UUU...AUUCC G AUG U CCC AAAGUCG-5'@LB@ | |@LB@ 48 7@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -25.7516 kcal/mol@LB@Unfolding Energy - mRNA 9.10307 kcal/mol@LB@Unfolding Energy - sRNA 4.60908 kcal/mol@LB@@LB@Position - mRNA 31 -- 70@LB@Position - sRNA 8 -- 47@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 132 |
0.005751 |
0.146 |
b2294 |
yfbU |
-8.39 |
0.309344 |
3 -- 25 |
24 -- 50 |
UPF0304 family protein |
|
_____________2______________________________26\n_____________|______________________________|\n_________5'-GC____________________GGU_______CCCGU...AAA-3'\n______________AGGAG______UCUGG_ACA___GUUGGCA\n______________|||||______:||||_|||___|:|:|||\n______________UCCUC______GGACC_UGU___CGAUCGU\n3'-UUU...CCGAU_____CACCAA_____A_____________AAAAU...UCG-5'\n_____________|______________________________|\n_____________51_____________________________23\n |
19 -- 25 |
24 -- 30 |
-20.5947 kcal/mol |
7.58762 kcal/mol |
4.6134 kcal/mol |
2 26@LB@ | |@LB@ 5'-GC GGU CCCGU...AAA-3'@LB@ AGGAG UCUGG ACA GUUGGCA@LB@ ||||| :|||| ||| |:|:|||@LB@ UCCUC GGACC UGU CGAUCGU@LB@3'-UUU...CCGAU CACCAA A AAAAU...UCG-5'@LB@ | |@LB@ 51 23@LB@@LB@@LB@Energy -8.39 kcal/mol@LB@Hybridization Energy -20.5947 kcal/mol@LB@Unfolding Energy - mRNA 7.58762 kcal/mol@LB@Unfolding Energy - sRNA 4.6134 kcal/mol@LB@@LB@Position - mRNA 3 -- 25@LB@Position - sRNA 24 -- 50@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 24 |
0.0003458 |
0.04652 |
b2308 |
hisQ |
-16.60 |
0.003436 |
190 -- 219 |
2 -- 36 |
histidine ABC transporter permease |
|
_____________189___________________________________220\n_____________|_____________________________________|\n5'-GAU...CGACA_______GC_____GUUG___________________GUGUU...UUG-3'\n______________GG_ACAG__AGCAU____UAUGGGUU______UUCAG\n______________||_||||__|||||____||||||||______|||||\n______________CC_UGUC__UCGUA____AUACCCAA______AAGUC\n3'-UUU...AAGGA__A____GA_____AA__________UACAAA_____G-5'\n_____________|_____________________________________|\n_____________37____________________________________1\n |
208 -- 214 |
13 -- 19 |
-26.4576 kcal/mol |
8.3674 kcal/mol |
1.49503 kcal/mol |
189 220@LB@ | |@LB@5'-GAU...CGACA GC GUUG GUGUU...UUG-3'@LB@ GG ACAG AGCAU UAUGGGUU UUCAG@LB@ || |||| ||||| |||||||| |||||@LB@ CC UGUC UCGUA AUACCCAA AAGUC@LB@3'-UUU...AAGGA A GA AA UACAAA G-5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -26.4576 kcal/mol@LB@Unfolding Energy - mRNA 8.3674 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 190 -- 219@LB@Position - sRNA 2 -- 36@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 13 -- 19@LB@ |
