| 156 |
0.007969 |
0.1694 |
b4025 |
pgi |
-9.69 |
0.190093 |
4 -- 41 |
3 -- 36 |
glucosephosphate isomerase |
|
_____________3_______________________________________42\n_____________|_______________________________________|\n________5'-AGC__G_______U__ACG______GUC___CGGA_______UCCAC...AAG-3'\n______________GG_GCGGUUG_CA____AUGGG___AUG____UUUUUCA\n______________||_:|:|:|:_||____|||||___|||____|||||||\n______________CC_UGUCGAU_GU____UACCC___UAC____AAAAAGU\n3'-UUU...AAGGA__A_______C__AAAA_____AA_______________CG-5'\n_____________|_______________________________________|\n_____________37______________________________________2\n |
35 -- 41 |
3 -- 9 |
-21.0745 kcal/mol |
9.8922 kcal/mol |
1.49503 kcal/mol |
3 42@LB@ | |@LB@ 5'-AGC G U ACG GUC CGGA UCCAC...AAG-3'@LB@ GG GCGGUUG CA AUGGG AUG UUUUUCA@LB@ || :|:|:|: || ||||| ||| |||||||@LB@ CC UGUCGAU GU UACCC UAC AAAAAGU@LB@3'-UUU...AAGGA A C AAAA AA CG-5'@LB@ | |@LB@ 37 2@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -21.0745 kcal/mol@LB@Unfolding Energy - mRNA 9.8922 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 4 -- 41@LB@Position - sRNA 3 -- 36@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 11 |
3.883e-05 |
0.01168 |
b4074 |
nrfE |
-17.71 |
0.001322 |
131 -- 144 |
35 -- 48 |
heme lyase (NrfEFG) for insertion of heme into c552 subunit NrfE |
|
_____________130____________145\n_____________|______________|\n5'-ACC...GAAAA______________ACGUA...UGC-3'\n______________GAGGUGGUUUCUGG\n______________|||||||||:||||\n______________CUCCACCAAGGACC\n3'-UUU...GAUUC______________AUGUC...UCG-5'\n_____________|______________|\n_____________49_____________34\n |
138 -- 144 |
35 -- 41 |
-26.5218 kcal/mol |
5.67902 kcal/mol |
3.13693 kcal/mol |
130 145@LB@ | |@LB@5'-ACC...GAAAA ACGUA...UGC-3'@LB@ GAGGUGGUUUCUGG@LB@ |||||||||:||||@LB@ CUCCACCAAGGACC@LB@3'-UUU...GAUUC AUGUC...UCG-5'@LB@ | |@LB@ 49 34@LB@@LB@@LB@Energy -17.71 kcal/mol@LB@Hybridization Energy -26.5218 kcal/mol@LB@Unfolding Energy - mRNA 5.67902 kcal/mol@LB@Unfolding Energy - sRNA 3.13693 kcal/mol@LB@@LB@Position - mRNA 131 -- 144@LB@Position - sRNA 35 -- 48@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 165 |
0.008583 |
0.1748 |
b4075 |
nrfF |
-7.99 |
0.354712 |
71 -- 77 |
63 -- 69 |
heme lyase (NrfEFG) for insertion of heme into c552 subunit NrfF |
|
_____________70______78\n_____________|_______|\n5'-AGC...UCAUG_______AAACU...AAC-3'\n______________GGGGAGA\n______________:||||||\n______________UCCCUCU\n3'-UUU...CACAU_______AAUGU...UCG-5'\n_____________|_______|\n_____________70______62\n |
71 -- 77 |
63 -- 69 |
-11.2965 kcal/mol |
2.37125 kcal/mol |
0.939295 kcal/mol |
70 78@LB@ | |@LB@5'-AGC...UCAUG AAACU...AAC-3'@LB@ GGGGAGA@LB@ :||||||@LB@ UCCCUCU@LB@3'-UUU...CACAU AAUGU...UCG-5'@LB@ | |@LB@ 70 62@LB@@LB@@LB@Energy -7.99 kcal/mol@LB@Hybridization Energy -11.2965 kcal/mol@LB@Unfolding Energy - mRNA 2.37125 kcal/mol@LB@Unfolding Energy - sRNA 0.939295 kcal/mol@LB@@LB@Position - mRNA 71 -- 77@LB@Position - sRNA 63 -- 69@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 154 |
0.007726 |
0.1686 |
b4203 |
rplI |
-9.34 |
0.218324 |
285 -- 297 |
29 -- 41 |
50S ribosomal subunit protein L9 |
|
_____________284___________298\n_____________|_____________|\n5'-AAA...GUAAC__________C__AGG-3'\n______________UUCCUGGUAC_GC\n______________||||||||||_||\n______________AAGGACCAUG_CG\n3'-UUU...CCACC__________U__AUCGU...UCG-5'\n_____________|_____________|\n_____________42____________28\n |
288 -- 294 |
32 -- 38 |
-19.8737 kcal/mol |
6.23655 kcal/mol |
4.29727 kcal/mol |
284 298@LB@ | |@LB@5'-AAA...GUAAC C AGG-3'@LB@ UUCCUGGUAC GC@LB@ |||||||||| ||@LB@ AAGGACCAUG CG@LB@3'-UUU...CCACC U AUCGU...UCG-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -19.8737 kcal/mol@LB@Unfolding Energy - mRNA 6.23655 kcal/mol@LB@Unfolding Energy - sRNA 4.29727 kcal/mol@LB@@LB@Position - mRNA 285 -- 297@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 176 |
0.009679 |
0.1848 |
b4348 |
hsdS |
-12.85 |
0.041875 |
168 -- 192 |
15 -- 42 |
specificity determinant for hsdM and hsdR |
|
_____________167__________________________193\n_____________|____________________________|\n5'-CUG...CGUCA___G____A____A________G_____GUGAA...UAA-3'\n______________GUU_CUGG___AG__AGCGUUU_GUGGG\n______________|||_||||___||__|||:|||_:||||\n______________CAA_GACC___UC__UCGUAAA_UACCC\n3'-UUU...UCCAC___G____AUG__GA_______A_____AAUAC...UCG-5'\n_____________|____________________________|\n_____________43___________________________14\n |
180 -- 186 |
21 -- 27 |
-24.8178 kcal/mol |
7.40251 kcal/mol |
4.57031 kcal/mol |
167 193@LB@ | |@LB@5'-CUG...CGUCA G A A G GUGAA...UAA-3'@LB@ GUU CUGG AG AGCGUUU GUGGG@LB@ ||| |||| || |||:||| :||||@LB@ CAA GACC UC UCGUAAA UACCC@LB@3'-UUU...UCCAC G AUG GA A AAUAC...UCG-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -12.85 kcal/mol@LB@Hybridization Energy -24.8178 kcal/mol@LB@Unfolding Energy - mRNA 7.40251 kcal/mol@LB@Unfolding Energy - sRNA 4.57031 kcal/mol@LB@@LB@Position - mRNA 168 -- 192@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 180 -- 186@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 157 |
0.007972 |
0.1694 |
b4350 |
hsdR |
-17.86 |
0.001148 |
15 -- 50 |
1 -- 35 |
endonuclease R Type I restriction enzyme |
|
_____________14____________________________________51\n_____________|_____________________________________|\n5'-UAG...UCAUA_____UC__U___GAAUCA____AG____________UACUA...ACA-3'\n______________GUACA__CU_GCA_______GGU__AUGUUUUUCGGC\n______________|||||__||_|||_______|||__|||||||||:||\n______________CAUGU__GA_CGU_______CCA__UACAAAAAGUCG\n3'-UUU...AGGAC_____C___U___AAAAUAC___A_____________-5'\n_____________|____________________________________|\n_____________36___________________________________1\n |
44 -- 50 |
1 -- 7 |
-27.1826 kcal/mol |
7.83025 kcal/mol |
1.49508 kcal/mol |
14 51@LB@ | |@LB@5'-UAG...UCAUA UC U GAAUCA AG UACUA...ACA-3'@LB@ GUACA CU GCA GGU AUGUUUUUCGGC@LB@ ||||| || ||| ||| |||||||||:||@LB@ CAUGU GA CGU CCA UACAAAAAGUCG@LB@3'-UUU...AGGAC C U AAAAUAC A -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -17.86 kcal/mol@LB@Hybridization Energy -27.1826 kcal/mol@LB@Unfolding Energy - mRNA 7.83025 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 15 -- 50@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 88 |
0.002837 |
0.1082 |
b4377 |
yjjU |
-10.09 |
0.160689 |
120 -- 144 |
1 -- 33 |
putative patatin-like family phospholipase |
|
_____________119________________________________145\n_____________|__________________________________|\n5'-AGG...GUCCA____A___________C_________________GAAUA...GAC-3'\n______________GCGG_CUGGC_UUUUG_GG________UUUUAGC\n______________:|:|_||:||_||||:_||________|||:|||\n______________UGUC_GAUCG_AAAAU_CC________AAAGUCG\n3'-UUU...GACCA__________U_____A__CAAUACAA_______-5'\n_____________|_________________________________|\n_____________34________________________________1\n |
138 -- 144 |
1 -- 7 |
-20.956 kcal/mol |
9.37145 kcal/mol |
1.49313 kcal/mol |
119 145@LB@ | |@LB@5'-AGG...GUCCA A C GAAUA...GAC-3'@LB@ GCGG CUGGC UUUUG GG UUUUAGC@LB@ :|:| ||:|| ||||: || |||:|||@LB@ UGUC GAUCG AAAAU CC AAAGUCG@LB@3'-UUU...GACCA U A CAAUACAA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -20.956 kcal/mol@LB@Unfolding Energy - mRNA 9.37145 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 120 -- 144@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 64 |
0.001739 |
0.09016 |
b4463 |
ygcU |
-11.99 |
0.066010 |
140 -- 150 |
36 -- 46 |
putative FAD-linked oxidoreductase |
|
_____________139_________151\n_____________|___________|\n5'-AUC...AUAAC___________UUUUC...UUG-3'\n______________GGUGGUUUCUG\n______________|||||||:|||\n______________CCACCAAGGAC\n3'-UUU...UUCCU___________CAUGU...UCG-5'\n_____________|___________|\n_____________47__________35\n |
144 -- 150 |
36 -- 42 |
-19.2157 kcal/mol |
4.08908 kcal/mol |
3.13564 kcal/mol |
139 151@LB@ | |@LB@5'-AUC...AUAAC UUUUC...UUG-3'@LB@ GGUGGUUUCUG@LB@ |||||||:|||@LB@ CCACCAAGGAC@LB@3'-UUU...UUCCU CAUGU...UCG-5'@LB@ | |@LB@ 47 35@LB@@LB@@LB@Energy -11.99 kcal/mol@LB@Hybridization Energy -19.2157 kcal/mol@LB@Unfolding Energy - mRNA 4.08908 kcal/mol@LB@Unfolding Energy - sRNA 3.13564 kcal/mol@LB@@LB@Position - mRNA 140 -- 150@LB@Position - sRNA 36 -- 46@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 85 |
0.002796 |
0.1082 |
b4536 |
yobH |
-12.68 |
0.045962 |
237 -- 287 |
1 -- 38 |
uncharacterized protein |
|
_____________236__________________________________________________288\n_____________|____________________________________________________|\n5'-CAA...UAGCA_________AUAGGAUUAUUA__C____GA______C___U__A__GGA___AAAGA...CCG-3'\n______________CUGGUAUGG____________CU_AGCG___UAUGG_GUU_UG_UU___AGC\n______________||||||::|____________||_|||:___|||||_|||_||_||___|||\n______________GACCAUGUC____________GA_UCGU___AUACC_CAA_AC_AA___UCG\n3'-UUU...CCAAG____________________________AAA_________U__A__AAG___-5'\n_____________|___________________________________________________|\n_____________39__________________________________________________1\n |
239 -- 245 |
30 -- 36 |
-25.5821 kcal/mol |
8.3664 kcal/mol |
4.54019 kcal/mol |
236 288@LB@ | |@LB@5'-CAA...UAGCA AUAGGAUUAUUA C GA C U A GGA AAAGA...CCG-3'@LB@ CUGGUAUGG CU AGCG UAUGG GUU UG UU AGC@LB@ ||||||::| || |||: ||||| ||| || || |||@LB@ GACCAUGUC GA UCGU AUACC CAA AC AA UCG@LB@3'-UUU...CCAAG AAA U A AAG -5'@LB@ | |@LB@ 39 1@LB@@LB@@LB@Energy -12.68 kcal/mol@LB@Hybridization Energy -25.5821 kcal/mol@LB@Unfolding Energy - mRNA 8.3664 kcal/mol@LB@Unfolding Energy - sRNA 4.54019 kcal/mol@LB@@LB@Position - mRNA 237 -- 287@LB@Position - sRNA 1 -- 38@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 4 |
1.432e-06 |
0.001203 |
b4547 |
ypfN |
-14.60 |
0.014593 |
223 -- 236 |
33 -- 46 |
putative membrane protein UPF0370 family |
|
_____________222____________237\n_____________|______________|\n5'-UGA...AUAUU_____A________AUUGU...AGA-3'\n______________GGUGG_UUCUGGUG\n______________|||||_|:|||||:\n______________CCACC_AGGACCAU\n3'-UUU...UUCCU_____A________GUCGA...UCG-5'\n_____________|______________|\n_____________47_____________32\n |
230 -- 236 |
33 -- 39 |
-20.5459 kcal/mol |
2.69728 kcal/mol |
3.25117 kcal/mol |
222 237@LB@ | |@LB@5'-UGA...AUAUU A AUUGU...AGA-3'@LB@ GGUGG UUCUGGUG@LB@ ||||| |:|||||:@LB@ CCACC AGGACCAU@LB@3'-UUU...UUCCU A GUCGA...UCG-5'@LB@ | |@LB@ 47 32@LB@@LB@@LB@Energy -14.60 kcal/mol@LB@Hybridization Energy -20.5459 kcal/mol@LB@Unfolding Energy - mRNA 2.69728 kcal/mol@LB@Unfolding Energy - sRNA 3.25117 kcal/mol@LB@@LB@Position - mRNA 223 -- 236@LB@Position - sRNA 33 -- 46@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 33 -- 39@LB@ |
