| 189 |
0.01085 |
0.1919 |
b3606 |
trmL |
-8.64 |
0.283903 |
120 -- 126 |
63 -- 69 |
tRNA Leu mC34 mU34 2'-O-methyltransferase SAM-dependent |
|
_____________119_____127\n_____________|_______|\n5'-UAG...CCUCC_______GGGCC...AAC-3'\n______________GGGGAGA\n______________:||||||\n______________UCCCUCU\n3'-UUU...CACAU_______AAUGU...UCG-5'\n_____________|_______|\n_____________70______62\n |
120 -- 126 |
63 -- 69 |
-10.8913 kcal/mol |
1.31422 kcal/mol |
0.939295 kcal/mol |
119 127@LB@ | |@LB@5'-UAG...CCUCC GGGCC...AAC-3'@LB@ GGGGAGA@LB@ :||||||@LB@ UCCCUCU@LB@3'-UUU...CACAU AAUGU...UCG-5'@LB@ | |@LB@ 70 62@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -10.8913 kcal/mol@LB@Unfolding Energy - mRNA 1.31422 kcal/mol@LB@Unfolding Energy - sRNA 0.939295 kcal/mol@LB@@LB@Position - mRNA 120 -- 126@LB@Position - sRNA 63 -- 69@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 161 |
0.008114 |
0.1694 |
b3656 |
yicI |
-11.96 |
0.067144 |
124 -- 143 |
14 -- 37 |
putative alpha-glucosidase |
b3878 |
_____________123______________________144\n_____________|________________________|\n5'-ACA...CGUUA___A_________UCA________AAACG...UGG-3'\n______________UGG_ACAGCUGGC_______GGGU\n______________|||_||||||:||_______||||\n______________ACC_UGUCGAUCG_______CCCA\n3'-UUU...CAAGG___A_________UAAAAUA____AUACA...UCG-5'\n_____________|________________________|\n_____________38_______________________13\n |
130 -- 136 |
25 -- 31 |
-23.0355 kcal/mol |
8.41802 kcal/mol |
2.65978 kcal/mol |
123 144@LB@ | |@LB@5'-ACA...CGUUA A UCA AAACG...UGG-3'@LB@ UGG ACAGCUGGC GGGU@LB@ ||| ||||||:|| ||||@LB@ ACC UGUCGAUCG CCCA@LB@3'-UUU...CAAGG A UAAAAUA AUACA...UCG-5'@LB@ | |@LB@ 38 13@LB@@LB@@LB@Energy -11.96 kcal/mol@LB@Hybridization Energy -23.0355 kcal/mol@LB@Unfolding Energy - mRNA 8.41802 kcal/mol@LB@Unfolding Energy - sRNA 2.65978 kcal/mol@LB@@LB@Position - mRNA 124 -- 143@LB@Position - sRNA 14 -- 37@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 162 |
0.008285 |
0.1719 |
b3671 |
ilvB |
-15.19 |
0.009769 |
264 -- 284 |
22 -- 41 |
acetolactate synthase 2 large subunit |
|
_____________263___________________285\n_____________|_____________________|\n5'-CUA...UUCAU_______A_____AG______AAGAU...GCA-3'\n______________UUCCUGG_ACAGC__GGCAUU\n______________|||||||_|||||__:|||||\n______________AAGGACC_UGUCG__UCGUAA\n3'-UUU...CCACC_______A_____A_______AAUAC...UCG-5'\n_____________|_____________________|\n_____________42____________________21\n |
264 -- 270 |
35 -- 41 |
-26.898 kcal/mol |
7.14717 kcal/mol |
4.5564 kcal/mol |
263 285@LB@ | |@LB@5'-CUA...UUCAU A AG AAGAU...GCA-3'@LB@ UUCCUGG ACAGC GGCAUU@LB@ ||||||| ||||| :|||||@LB@ AAGGACC UGUCG UCGUAA@LB@3'-UUU...CCACC A A AAUAC...UCG-5'@LB@ | |@LB@ 42 21@LB@@LB@@LB@Energy -15.19 kcal/mol@LB@Hybridization Energy -26.898 kcal/mol@LB@Unfolding Energy - mRNA 7.14717 kcal/mol@LB@Unfolding Energy - sRNA 4.5564 kcal/mol@LB@@LB@Position - mRNA 264 -- 284@LB@Position - sRNA 22 -- 41@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 126 |
0.00537 |
0.142 |
b3789 |
rffH |
-9.20 |
0.230539 |
124 -- 140 |
30 -- 46 |
glucose-1-phosphate thymidylyltransferase |
|
_____________123_______________141\n_____________|_________________|\n5'-GGC...AAGCU_____AAG_A_______GACGG...UGA-3'\n______________GGUGG___C_GGUGCAG\n______________|||||___|_|||:|||\n______________CCACC___G_CCAUGUC\n3'-UUU...UUCCU_____AAG_A_______GAUCG...UCG-5'\n_____________|_________________|\n_____________47________________29\n |
134 -- 140 |
30 -- 36 |
-19.3061 kcal/mol |
5.8192 kcal/mol |
4.28755 kcal/mol |
123 141@LB@ | |@LB@5'-GGC...AAGCU AAG A GACGG...UGA-3'@LB@ GGUGG C GGUGCAG@LB@ ||||| | |||:|||@LB@ CCACC G CCAUGUC@LB@3'-UUU...UUCCU AAG A GAUCG...UCG-5'@LB@ | |@LB@ 47 29@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -19.3061 kcal/mol@LB@Unfolding Energy - mRNA 5.8192 kcal/mol@LB@Unfolding Energy - sRNA 4.28755 kcal/mol@LB@@LB@Position - mRNA 124 -- 140@LB@Position - sRNA 30 -- 46@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 1 |
0 |
0 |
b3824 |
rhtB |
-9.47 |
0.207720 |
26 -- 71 |
1 -- 43 |
homoserine homoserine lactone and S-methyl-methionine efflux pump |
|
_____________25_________________________________________________72\n_____________|__________________________________________________|\n5'-ACG...UCAGC___C__A____AAAA_____AAAC_______CUCU_________CC____CUUUU...ACC-3'\n______________GGU_CC_UGGU____GCAGC____GCGUUUU________UGUUU__CAGU\n______________|||_||_||||____:||||____||:||||________|||||__|||:\n______________CCA_GG_ACCA____UGUCG____CGUAAAA________ACAAA__GUCG\n3'-UUU...CUCCA___A________________AU_________UACCCAAU_____AA____-5'\n_____________|_________________________________________________|\n_____________44________________________________________________1\n |
50 -- 56 |
20 -- 26 |
-25.7164 kcal/mol |
11.6412 kcal/mol |
4.6088 kcal/mol |
25 72@LB@ | |@LB@5'-ACG...UCAGC C A AAAA AAAC CUCU CC CUUUU...ACC-3'@LB@ GGU CC UGGU GCAGC GCGUUUU UGUUU CAGU@LB@ ||| || |||| :|||| ||:|||| ||||| |||:@LB@ CCA GG ACCA UGUCG CGUAAAA ACAAA GUCG@LB@3'-UUU...CUCCA A AU UACCCAAU AA -5'@LB@ | |@LB@ 44 1@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -25.7164 kcal/mol@LB@Unfolding Energy - mRNA 11.6412 kcal/mol@LB@Unfolding Energy - sRNA 4.6088 kcal/mol@LB@@LB@Position - mRNA 26 -- 71@LB@Position - sRNA 1 -- 43@LB@Position Seed - mRNA 50 -- 56@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 171 |
0.00925 |
0.1803 |
b3832 |
rmuC |
-14.29 |
0.017807 |
191 -- 257 |
1 -- 50 |
DNA recombination protein |
|
_____________190___________________________________________________________________258\n_____________|_____________________________________________________________________|\n5'-AAA...GCGUC______CGUUG___A____UCAAUCA____UUAC_______UU_____G___________GCAA_____UGGCU...AGC-3'\n______________AGGAGG_____UGG_UUUC_______UGGU____GCAGUUA__GCGUU__GUGGG_UGUG____UUGGC\n______________||||||_____|||_||:|_______||||____:|||:||__||:||__:||||_|:||____|::||\n______________UCCUCC_____ACC_AAGG_______ACCA____UGUCGAU__CGUAA__UACCC_AUAC____AGUCG\n3'-UUU...CCGAU________________________________________________AA_____A____AAAA_____-5'\n_____________|____________________________________________________________________|\n_____________51___________________________________________________________________1\n |
225 -- 231 |
27 -- 33 |
-40.6833 kcal/mol |
21.7322 kcal/mol |
4.6634 kcal/mol |
190 258@LB@ | |@LB@5'-AAA...GCGUC CGUUG A UCAAUCA UUAC UU G GCAA UGGCU...AGC-3'@LB@ AGGAGG UGG UUUC UGGU GCAGUUA GCGUU GUGGG UGUG UUGGC@LB@ |||||| ||| ||:| |||| :|||:|| ||:|| :|||| |:|| |::||@LB@ UCCUCC ACC AAGG ACCA UGUCGAU CGUAA UACCC AUAC AGUCG@LB@3'-UUU...CCGAU AA A AAAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -14.29 kcal/mol@LB@Hybridization Energy -40.6833 kcal/mol@LB@Unfolding Energy - mRNA 21.7322 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 191 -- 257@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 185 |
0.01059 |
0.1919 |
b3856 |
mobB |
-14.40 |
0.016564 |
123 -- 150 |
1 -- 31 |
molybdopterin-guanine dinucleotide biosynthesis protein B |
|
_____________122______________________________151\n_____________|________________________________|\n5'-GUG...CGUCU________GUC____C_____A__________GAUCA...CCA-3'\n______________GGCUGGCG____AUG_GGUUG____UUUCAGC\n______________:|||:||:____|||_||||:____|||||||\n______________UCGAUCGU____UAC_CCAAU____AAAGUCG\n3'-UUU...CCAUG________AAAA_________ACAA_______-5'\n_____________|_______________________________|\n_____________32______________________________1\n |
144 -- 150 |
1 -- 7 |
-26.2194 kcal/mol |
10.3308 kcal/mol |
1.48722 kcal/mol |
122 151@LB@ | |@LB@5'-GUG...CGUCU GUC C A GAUCA...CCA-3'@LB@ GGCUGGCG AUG GGUUG UUUCAGC@LB@ :|||:||: ||| ||||: |||||||@LB@ UCGAUCGU UAC CCAAU AAAGUCG@LB@3'-UUU...CCAUG AAAA ACAA -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -14.40 kcal/mol@LB@Hybridization Energy -26.2194 kcal/mol@LB@Unfolding Energy - mRNA 10.3308 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 123 -- 150@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 75 |
0.002192 |
0.09621 |
b3950 |
frwB |
-15.16 |
0.010002 |
30 -- 54 |
11 -- 46 |
putative enzyme IIB component of PTS |
b3899 |
_____________29___________________________________55\n_____________|____________________________________|\n5'-GCA...CUGCC_______GAA________A_________________AUCGC...GGG-3'\n______________GGUGGUU________GGC_AGC______UGGGUUAU\n______________|||||||________:||_|||______||||||||\n______________CCACCAA________UCG_UCG______ACCCAAUA\n3'-UUU...UUCCU_______GGACCAUG___A___UAAAAU________CAAAA...UCG-5'\n_____________|____________________________________|\n_____________47___________________________________10\n |
48 -- 54 |
11 -- 17 |
-24.5661 kcal/mol |
4.81447 kcal/mol |
4.59143 kcal/mol |
29 55@LB@ | |@LB@5'-GCA...CUGCC GAA A AUCGC...GGG-3'@LB@ GGUGGUU GGC AGC UGGGUUAU@LB@ ||||||| :|| ||| ||||||||@LB@ CCACCAA UCG UCG ACCCAAUA@LB@3'-UUU...UUCCU GGACCAUG A UAAAAU CAAAA...UCG-5'@LB@ | |@LB@ 47 10@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -24.5661 kcal/mol@LB@Unfolding Energy - mRNA 4.81447 kcal/mol@LB@Unfolding Energy - sRNA 4.59143 kcal/mol@LB@@LB@Position - mRNA 30 -- 54@LB@Position - sRNA 11 -- 46@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 152 |
0.007594 |
0.1679 |
b3992 |
thiF |
-12.60 |
0.047865 |
3 -- 22 |
24 -- 47 |
adenylyltransferase modifies ThiS C-terminus |
|
_____________2________________________23\n_____________|________________________|\n_________5'-GC_____________A__________CGGCA...UUA-3'\n______________AGG_GG___CUGG_ACAGCUGGCA\n______________|||_||___||||_||||||:|||\n______________UCC_CC___GACC_UGUCGAUCGU\n3'-UUU...AUUCC___A__AAG____A__________AAAAU...UCG-5'\n_____________|________________________|\n_____________48_______________________23\n |
16 -- 22 |
24 -- 30 |
-27.3128 kcal/mol |
10.1529 kcal/mol |
4.55893 kcal/mol |
2 23@LB@ | |@LB@ 5'-GC A CGGCA...UUA-3'@LB@ AGG GG CUGG ACAGCUGGCA@LB@ ||| || |||| ||||||:|||@LB@ UCC CC GACC UGUCGAUCGU@LB@3'-UUU...AUUCC A AAG A AAAAU...UCG-5'@LB@ | |@LB@ 48 23@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -27.3128 kcal/mol@LB@Unfolding Energy - mRNA 10.1529 kcal/mol@LB@Unfolding Energy - sRNA 4.55893 kcal/mol@LB@@LB@Position - mRNA 3 -- 22@LB@Position - sRNA 24 -- 47@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 40 |
0.0008246 |
0.06626 |
b4019 |
metH |
-11.44 |
0.086775 |
244 -- 271 |
15 -- 42 |
homocysteine-N5-methyltetrahydrofolate transmethylase B12-dependent |
|
_____________243____________________________272\n_____________|______________________________|\n5'-UGA...UGAAC__A_________U__AC____G________CACCA...ACG-3'\n______________GU_UUCUGGUGC_GG__GGCG___UAUGGG\n______________||_|:|||||:|_:|__:||:___||||||\n______________CA_AGGACCAUG_UC__UCGU___AUACCC\n3'-UUU...UCCAC_______________GA____AAA______AAUAC...UCG-5'\n_____________|______________________________|\n_____________43_____________________________14\n |
249 -- 255 |
32 -- 38 |
-26.1297 kcal/mol |
10.116 kcal/mol |
4.57031 kcal/mol |
243 272@LB@ | |@LB@5'-UGA...UGAAC A U AC G CACCA...ACG-3'@LB@ GU UUCUGGUGC GG GGCG UAUGGG@LB@ || |:|||||:| :| :||: ||||||@LB@ CA AGGACCAUG UC UCGU AUACCC@LB@3'-UUU...UCCAC GA AAA AAUAC...UCG-5'@LB@ | |@LB@ 43 14@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -26.1297 kcal/mol@LB@Unfolding Energy - mRNA 10.116 kcal/mol@LB@Unfolding Energy - sRNA 4.57031 kcal/mol@LB@@LB@Position - mRNA 244 -- 271@LB@Position - sRNA 15 -- 42@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 32 -- 38@LB@ |
