| 159 |
0.02005 |
0.4072 |
b1725 |
yniA |
-13.71 |
0.046110 |
65 -- 84 |
43 -- 60 |
fructosamine kinase family protein |
|
_____________64___________________85\n_____________|____________________|\n5'-GAG...ACGAC_______G____GAAU____ACAGA...GGC-3'\n______________CUGGGAG_AAUG____AGCA\n______________||||:||_||||____||||\n______________GACCUUC_UUAC____UCGU\n3'-UUU...AUUAU_______G____AC______UACAG...GCG-5'\n_____________|____________________|\n_____________61___________________42\n |
65 -- 71 |
54 -- 60 |
-19.5513 kcal/mol |
2.54567 kcal/mol |
3.29917 kcal/mol |
64 85@LB@ | |@LB@5'-GAG...ACGAC G GAAU ACAGA...GGC-3'@LB@ CUGGGAG AAUG AGCA@LB@ ||||:|| |||| ||||@LB@ GACCUUC UUAC UCGU@LB@3'-UUU...AUUAU G AC UACAG...GCG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -13.71 kcal/mol@LB@Hybridization Energy -19.5513 kcal/mol@LB@Unfolding Energy - mRNA 2.54567 kcal/mol@LB@Unfolding Energy - sRNA 3.29917 kcal/mol@LB@@LB@Position - mRNA 65 -- 84@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 84 |
0.008296 |
0.3318 |
b0892 |
rarA |
-13.69 |
0.046473 |
183 -- 215 |
37 -- 66 |
recombination intermediate processing DNA-dependent ATPase |
|
_____________182_________________________________216\n_____________|___________________________________|\n5'-CAA...UCAAC____GUA________CCUGA________UC_____CUCGA...AUU-3'\n______________GUAA_____GAGGCA_____GUGAGCAA__UGUCG\n______________||||_____||:|||_____||||||||__|||||\n______________CAUU_____CUUCGU_____CACUCGUU__ACAGC\n3'-UUU...CGAUU____AUGAC______UA__________________ACGAA...GCG-5'\n_____________|___________________________________|\n_____________67__________________________________36\n |
202 -- 208 |
42 -- 48 |
-25.9915 kcal/mol |
8.99953 kcal/mol |
3.30551 kcal/mol |
182 216@LB@ | |@LB@5'-CAA...UCAAC GUA CCUGA UC CUCGA...AUU-3'@LB@ GUAA GAGGCA GUGAGCAA UGUCG@LB@ |||| ||:||| |||||||| |||||@LB@ CAUU CUUCGU CACUCGUU ACAGC@LB@3'-UUU...CGAUU AUGAC UA ACGAA...GCG-5'@LB@ | |@LB@ 67 36@LB@@LB@@LB@Energy -13.69 kcal/mol@LB@Hybridization Energy -25.9915 kcal/mol@LB@Unfolding Energy - mRNA 8.99953 kcal/mol@LB@Unfolding Energy - sRNA 3.30551 kcal/mol@LB@@LB@Position - mRNA 183 -- 215@LB@Position - sRNA 37 -- 66@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 140 |
0.01604 |
0.3851 |
b4022 |
rluF |
-13.68 |
0.046602 |
82 -- 103 |
39 -- 60 |
23S rRNA pseudouridine(2604) synthase |
|
_____________81______________________104\n_____________|_______________________|\n5'-UUA...UGCUU____A_______U__________AACGA...UGU-3'\n______________CUGG_AAGUGAU_UGAGCAG_GU\n______________||||_|||::||_||||||:_||\n______________GACC_UUCGUUA_ACUCGUU_CA\n3'-UUU...AUUAU____________C_______A__GCACG...GCG-5'\n_____________|_______________________|\n_____________61______________________38\n |
95 -- 101 |
42 -- 48 |
-22.0004 kcal/mol |
5.021 kcal/mol |
3.3001 kcal/mol |
81 104@LB@ | |@LB@5'-UUA...UGCUU A U AACGA...UGU-3'@LB@ CUGG AAGUGAU UGAGCAG GU@LB@ |||| |||::|| ||||||: ||@LB@ GACC UUCGUUA ACUCGUU CA@LB@3'-UUU...AUUAU C A GCACG...GCG-5'@LB@ | |@LB@ 61 38@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -22.0004 kcal/mol@LB@Unfolding Energy - mRNA 5.021 kcal/mol@LB@Unfolding Energy - sRNA 3.3001 kcal/mol@LB@@LB@Position - mRNA 82 -- 103@LB@Position - sRNA 39 -- 60@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 46 |
0.004112 |
0.2905 |
b3263 |
yhdU |
-13.66 |
0.046979 |
167 -- 251 |
6 -- 86 |
putative membrane protein |
|
_____________166______________________________________________________________________________________________252\n_____________|________________________________________________________________________________________________|\n5'-GAU...UUCCU______________AAACAUGCACA____C________AUUC_C_____U__GU___________C_______CUG____________________UUUGA...CAG-3'\n______________GCCAG_ACUUGGUU___________GGCU_AGGUAAUG____G_AAGUA_UG__GGC____UCGU_GUUUUCG___UCUUCGU______UUUUCUG\n______________|||||_||::||:|___________||||_|:|||||:____|_|||:|_||__:||____||||_|:||||:___|||:||:______:||:|||\n______________CGGUC_UGGGCCGA___________CCGA_UUCAUUAU____C_UUCGU_AC__UCG____AGCA_CGAAAGU___AGAGGCG______GAAGGAC\n_______3'-UUUU_____G________________________________GAC________U__AC___UUAC____________CCA_______CUCCCA_______UAGCG-5'\n_____________|________________________________________________________________________________________________|\n_____________87_______________________________________________________________________________________________5\n |
245 -- 251 |
6 -- 12 |
-59.7696 kcal/mol |
20.3812 kcal/mol |
25.7297 kcal/mol |
166 252@LB@ | |@LB@5'-GAU...UUCCU AAACAUGCACA C AUUC C U GU C CUG UUUGA...CAG-3'@LB@ GCCAG ACUUGGUU GGCU AGGUAAUG G AAGUA UG GGC UCGU GUUUUCG UCUUCGU UUUUCUG@LB@ ||||| ||::||:| |||| |:|||||: | |||:| || :|| |||| |:||||: |||:||: :||:|||@LB@ CGGUC UGGGCCGA CCGA UUCAUUAU C UUCGU AC UCG AGCA CGAAAGU AGAGGCG GAAGGAC@LB@ 3'-UUUU G GAC U AC UUAC CCA CUCCCA UAGCG-5'@LB@ | |@LB@ 87 5@LB@@LB@@LB@Energy -13.66 kcal/mol@LB@Hybridization Energy -59.7696 kcal/mol@LB@Unfolding Energy - mRNA 20.3812 kcal/mol@LB@Unfolding Energy - sRNA 25.7297 kcal/mol@LB@@LB@Position - mRNA 167 -- 251@LB@Position - sRNA 6 -- 86@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 105 |
0.01075 |
0.3439 |
b2457 |
eutM |
-13.65 |
0.047053 |
202 -- 241 |
1 -- 59 |
ethanolamine utilization protein putative carboxysome structural protein |
|
_____________201__________________________________________________________242\n_____________|____________________________________________________________|\n5'-UAU...CACAA________UU_____G____A___AAA_________________________________ACUGA...UUA-3'\n______________UGGAAGCA_____AG_AAUG_UCG______________CC_CGGGG_____CCUGGUUGC\n______________||||||||_____||_||||_|||______________||_||:||_____||||:|:||\n______________ACCUUCGU_____UC_UUAC_AGC______________GG_GCUCC_____GGACUAGCG\n3'-UUU...UUAUG________UACAC__G________ACGAAAGUCCAAGA__C_____CAGAA_________-5'\n_____________|___________________________________________________________|\n_____________60__________________________________________________________1\n |
235 -- 241 |
1 -- 7 |
-38.4359 kcal/mol |
10.6717 kcal/mol |
14.1095 kcal/mol |
201 242@LB@ | |@LB@5'-UAU...CACAA UU G A AAA ACUGA...UUA-3'@LB@ UGGAAGCA AG AAUG UCG CC CGGGG CCUGGUUGC@LB@ |||||||| || |||| ||| || ||:|| ||||:|:||@LB@ ACCUUCGU UC UUAC AGC GG GCUCC GGACUAGCG@LB@3'-UUU...UUAUG UACAC G ACGAAAGUCCAAGA C CAGAA -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -38.4359 kcal/mol@LB@Unfolding Energy - mRNA 10.6717 kcal/mol@LB@Unfolding Energy - sRNA 14.1095 kcal/mol@LB@@LB@Position - mRNA 202 -- 241@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 158 |
0.01943 |
0.4072 |
b1941 |
fliI |
-13.60 |
0.048038 |
205 -- 238 |
56 -- 85 |
flagellum-specific ATP synthase |
|
_____________204_________________________________239\n_____________|___________________________________|\n5'-CUG...AAUGA___C_______ACUC_________CCAC_______UAACU...GCG-3'\n______________CCA_GCGCCUG____GCUGGCUAA_____GCUGGA\n______________|||_||:||:|____|||||||||_____:|||||\n______________GGU_CGUGGGC____CGACCGAUU_____UGACCU\n______3'-UUUUC________________________CAUUA______UCGUU...GCG-5'\n_____________|___________________________________|\n_____________86__________________________________55\n |
221 -- 227 |
68 -- 74 |
-38.0474 kcal/mol |
10.8324 kcal/mol |
13.6134 kcal/mol |
204 239@LB@ | |@LB@5'-CUG...AAUGA C ACUC CCAC UAACU...GCG-3'@LB@ CCA GCGCCUG GCUGGCUAA GCUGGA@LB@ ||| ||:||:| ||||||||| :|||||@LB@ GGU CGUGGGC CGACCGAUU UGACCU@LB@ 3'-UUUUC CAUUA UCGUU...GCG-5'@LB@ | |@LB@ 86 55@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -38.0474 kcal/mol@LB@Unfolding Energy - mRNA 10.8324 kcal/mol@LB@Unfolding Energy - sRNA 13.6134 kcal/mol@LB@@LB@Position - mRNA 205 -- 238@LB@Position - sRNA 56 -- 85@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 91 |
0.009487 |
0.3393 |
b4148 |
sugE |
-13.59 |
0.048204 |
42 -- 77 |
12 -- 46 |
multidrug efflux system protein |
|
_____________41___________________________________78\n_____________|____________________________________|\n5'-CGC...ACGAC___U_________CG__UGUU__________UA___ACAAA...UUA-3'\n______________AGC_GUGUCGUGC__UU____UUUUCUGCGA__GUC\n______________|||_:||||||||__|:____||:||:||||__|||\n______________UCG_UACAGCACG__AG____AAGAGGCGCU__CAG\n3'-UUU...UACAC___U_________AA__UCC___________CC___AAGGA...GCG-5'\n_____________|____________________________________|\n_____________47___________________________________11\n |
66 -- 72 |
17 -- 23 |
-35.5696 kcal/mol |
9.46718 kcal/mol |
12.5096 kcal/mol |
41 78@LB@ | |@LB@5'-CGC...ACGAC U CG UGUU UA ACAAA...UUA-3'@LB@ AGC GUGUCGUGC UU UUUUCUGCGA GUC@LB@ ||| :|||||||| |: ||:||:|||| |||@LB@ UCG UACAGCACG AG AAGAGGCGCU CAG@LB@3'-UUU...UACAC U AA UCC CC AAGGA...GCG-5'@LB@ | |@LB@ 47 11@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -35.5696 kcal/mol@LB@Unfolding Energy - mRNA 9.46718 kcal/mol@LB@Unfolding Energy - sRNA 12.5096 kcal/mol@LB@@LB@Position - mRNA 42 -- 77@LB@Position - sRNA 12 -- 46@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 58 |
0.00551 |
0.2905 |
b0156 |
erpA |
-13.52 |
0.049632 |
189 -- 214 |
36 -- 60 |
iron-sulfur cluster insertion protein |
|
_____________188_________________________215\n_____________|___________________________|\n5'-UAG...GUCGU__________AAUA_________A___AGCAC...UAC-3'\n______________UUGG_AGCAA____UGAGUGAUG_CGU\n______________:|||_|||||____||||::|||_|||\n______________GACC_UCGUU____ACUCGUUAC_GCA\n3'-UUU...AUUAU____U_____AC___________A___CGAAA...GCG-5'\n_____________|___________________________|\n_____________61__________________________35\n |
204 -- 210 |
40 -- 46 |
-21.0837 kcal/mol |
4.26473 kcal/mol |
3.30077 kcal/mol |
188 215@LB@ | |@LB@5'-UAG...GUCGU AAUA A AGCAC...UAC-3'@LB@ UUGG AGCAA UGAGUGAUG CGU@LB@ :||| ||||| ||||::||| |||@LB@ GACC UCGUU ACUCGUUAC GCA@LB@3'-UUU...AUUAU U AC A CGAAA...GCG-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -13.52 kcal/mol@LB@Hybridization Energy -21.0837 kcal/mol@LB@Unfolding Energy - mRNA 4.26473 kcal/mol@LB@Unfolding Energy - sRNA 3.30077 kcal/mol@LB@@LB@Position - mRNA 189 -- 214@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 144 |
0.01729 |
0.3998 |
b2913 |
serA |
-13.50 |
0.049990 |
182 -- 221 |
55 -- 90 |
D-3-phosphoglycerate dehydrogenase |
|
_____________181______________________________________222\n_____________|________________________________________|\n5'-UGU...AUUUC_____A___G___G___AAA____AA_____UC_______AAAGA...CCA-3'\n______________AAAAG_CAG_AUU_GGU___UGGC__AGGUA__GCUGGAG\n______________|||||_|||_|::_||:___||||__|:|||__:|||||:\n______________UUUUC_GUC_UGG_CCG___ACCG__UUCAU__UGACCUU\n___________3'-_____G___G___G__________A______UA_______CGUUA...GCG-5'\n______________|_______________________________________|\n______________90______________________________________54\n |
215 -- 221 |
55 -- 61 |
-33.5694 kcal/mol |
6.44391 kcal/mol |
13.6256 kcal/mol |
181 222@LB@ | |@LB@5'-UGU...AUUUC A G G AAA AA UC AAAGA...CCA-3'@LB@ AAAAG CAG AUU GGU UGGC AGGUA GCUGGAG@LB@ ||||| ||| |:: ||: |||| |:||| :|||||:@LB@ UUUUC GUC UGG CCG ACCG UUCAU UGACCUU@LB@ 3'- G G G A UA CGUUA...GCG-5'@LB@ | |@LB@ 90 54@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -33.5694 kcal/mol@LB@Unfolding Energy - mRNA 6.44391 kcal/mol@LB@Unfolding Energy - sRNA 13.6256 kcal/mol@LB@@LB@Position - mRNA 182 -- 221@LB@Position - sRNA 55 -- 90@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 111 |
0.01184 |
0.3513 |
b0528 |
ybcJ |
-13.49 |
0.050278 |
257 -- 272 |
44 -- 61 |
ribosome-associated protein; putative RNA-binding protein |
|
_____________256________________273\n_____________|__________________|\n5'-AGG...CUGAA________GC________GAAAG...CGA-3'\n______________ACUGGAAG___UG_GAGC\n______________||||||||___||_||||\n______________UGACCUUC___AC_CUCG\n3'-UUU...CAUUA________GUU__A____UUACA...GCG-5'\n_____________|__________________|\n_____________62_________________43\n |
258 -- 264 |
54 -- 60 |
-19.8617 kcal/mol |
3.07726 kcal/mol |
3.29941 kcal/mol |
256 273@LB@ | |@LB@5'-AGG...CUGAA GC GAAAG...CGA-3'@LB@ ACUGGAAG UG GAGC@LB@ |||||||| || ||||@LB@ UGACCUUC AC CUCG@LB@3'-UUU...CAUUA GUU A UUACA...GCG-5'@LB@ | |@LB@ 62 43@LB@@LB@@LB@Energy -13.49 kcal/mol@LB@Hybridization Energy -19.8617 kcal/mol@LB@Unfolding Energy - mRNA 3.07726 kcal/mol@LB@Unfolding Energy - sRNA 3.29941 kcal/mol@LB@@LB@Position - mRNA 257 -- 272@LB@Position - sRNA 44 -- 61@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 54 -- 60@LB@ |
