| 116 |
0.01242 |
0.3585 |
b0468 |
ybaN |
-14.97 |
0.028033 |
230 -- 260 |
44 -- 78 |
DUF454 family inner membrane protein |
|
_____________229___________________________________261\n_____________|_____________________________________|\n5'-GUC...AUUGG_______________________UAC___________GUGGU...UGC-3'\n______________CUGGCUGGC__GGUAGUGCUGGG___GC____UGGGC\n______________|:|||||||__:|||:|:||||:___||____||:||\n______________GGCCGACCG__UCAUUAUGACCU___CG____ACUCG\n3'-UUU...UCGUG_________AU____________U____UUAC_____UUACA...GCG-5'\n_____________|_____________________________________|\n_____________79____________________________________43\n |
244 -- 250 |
56 -- 62 |
-40.2392 kcal/mol |
12.5705 kcal/mol |
12.6976 kcal/mol |
229 261@LB@ | |@LB@5'-GUC...AUUGG UAC GUGGU...UGC-3'@LB@ CUGGCUGGC GGUAGUGCUGGG GC UGGGC@LB@ |:||||||| :|||:|:||||: || ||:||@LB@ GGCCGACCG UCAUUAUGACCU CG ACUCG@LB@3'-UUU...UCGUG AU U UUAC UUACA...GCG-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -40.2392 kcal/mol@LB@Unfolding Energy - mRNA 12.5705 kcal/mol@LB@Unfolding Energy - sRNA 12.6976 kcal/mol@LB@@LB@Position - mRNA 230 -- 260@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 104 |
0.01058 |
0.3418 |
b1475 |
fdnH |
-14.92 |
0.028592 |
64 -- 96 |
25 -- 61 |
formate dehydrogenase-N Fe-S (beta) subunit nitrate-inducible |
|
_____________63____________________________________97\n_____________|_____________________________________|\n5'-CGC...AAUCC_________UU______________C__GUAA_____AUAUC...UUA-3'\n______________ACUGG_GGC____UGAG_GGUGUCG_GC____AGGUU\n______________|||||_:||____||||_::|||||_||____|||||\n______________UGACC_UCG____ACUC_UUACAGC_CG____UCCAA\n3'-UUU...CAUUA_____U___UUAC____G_______A__AAAG_____GAGGC...GCG-5'\n_____________|_____________________________________|\n_____________62____________________________________24\n |
78 -- 84 |
37 -- 43 |
-32.5853 kcal/mol |
9.68233 kcal/mol |
7.98175 kcal/mol |
63 97@LB@ | |@LB@5'-CGC...AAUCC UU C GUAA AUAUC...UUA-3'@LB@ ACUGG GGC UGAG GGUGUCG GC AGGUU@LB@ ||||| :|| |||| ::||||| || |||||@LB@ UGACC UCG ACUC UUACAGC CG UCCAA@LB@3'-UUU...CAUUA U UUAC G A AAAG GAGGC...GCG-5'@LB@ | |@LB@ 62 24@LB@@LB@@LB@Energy -14.92 kcal/mol@LB@Hybridization Energy -32.5853 kcal/mol@LB@Unfolding Energy - mRNA 9.68233 kcal/mol@LB@Unfolding Energy - sRNA 7.98175 kcal/mol@LB@@LB@Position - mRNA 64 -- 96@LB@Position - sRNA 25 -- 61@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 49 |
0.004671 |
0.2905 |
b3184 |
yhbE |
-14.90 |
0.028775 |
284 -- 299 |
49 -- 64 |
EamA family inner membrane putative transporter |
|
_____________283______________300\n_____________|________________|\n5'-AAG...AAGCA________________G-3'\n______________GGUGCUGGAGGUGAUG\n______________::|:|||||:|::|||\n______________UUAUGACCUUCGUUAC\n3'-UUU...AUUCA________________ACUCG...GCG-5'\n_____________|________________|\n_____________65_______________48\n |
293 -- 299 |
49 -- 55 |
-22.6177 kcal/mol |
4.70237 kcal/mol |
3.01036 kcal/mol |
283 300@LB@ | |@LB@5'-AAG...AAGCA G-3'@LB@ GGUGCUGGAGGUGAUG@LB@ ::|:|||||:|::|||@LB@ UUAUGACCUUCGUUAC@LB@3'-UUU...AUUCA ACUCG...GCG-5'@LB@ | |@LB@ 65 48@LB@@LB@@LB@Energy -14.90 kcal/mol@LB@Hybridization Energy -22.6177 kcal/mol@LB@Unfolding Energy - mRNA 4.70237 kcal/mol@LB@Unfolding Energy - sRNA 3.01036 kcal/mol@LB@@LB@Position - mRNA 284 -- 299@LB@Position - sRNA 49 -- 64@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 32 |
0.002983 |
0.2776 |
b3032 |
cpdA |
-14.85 |
0.029357 |
133 -- 158 |
40 -- 64 |
3' 5' cAMP phosphodiesterase |
|
_____________132_________________________159\n_____________|___________________________|\n5'-ACG...GUUGC_______UUU____C____________GCGAU...UGU-3'\n______________GAUACUG___AGCA_AUG_GAGCGAUG\n______________:||||||___||||_|||_||||:|||\n______________UUAUGAC___UCGU_UAC_CUCGUUAC\n3'-UUU...AUUCA_______CU_________A________AGCAC...GCG-5'\n_____________|___________________________|\n_____________65__________________________39\n |
152 -- 158 |
40 -- 46 |
-24.327 kcal/mol |
6.1707 kcal/mol |
3.30198 kcal/mol |
132 159@LB@ | |@LB@5'-ACG...GUUGC UUU C GCGAU...UGU-3'@LB@ GAUACUG AGCA AUG GAGCGAUG@LB@ :|||||| |||| ||| ||||:|||@LB@ UUAUGAC UCGU UAC CUCGUUAC@LB@3'-UUU...AUUCA CU A AGCAC...GCG-5'@LB@ | |@LB@ 65 39@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -24.327 kcal/mol@LB@Unfolding Energy - mRNA 6.1707 kcal/mol@LB@Unfolding Energy - sRNA 3.30198 kcal/mol@LB@@LB@Position - mRNA 133 -- 158@LB@Position - sRNA 40 -- 64@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 114 |
0.01202 |
0.3513 |
b4348 |
hsdS |
-14.85 |
0.029459 |
128 -- 148 |
40 -- 66 |
specificity determinant for hsdM and hsdR |
|
_____________127_________________________149\n_____________|___________________________|\n5'-CUG...GAUGC___________________________AGGCC...UAA-3'\n______________GUGA_ACUGGGGGC_____GAGCGAUG\n______________||:|_|||||::||_____||||:|||\n______________CAUU_UGACCUUCG_____CUCGUUAC\n3'-UUU...CGAUU____A_________UUACA________AGCAC...GCG-5'\n_____________|___________________________|\n_____________67__________________________39\n |
142 -- 148 |
40 -- 46 |
-25.5951 kcal/mol |
7.44461 kcal/mol |
3.30497 kcal/mol |
127 149@LB@ | |@LB@5'-CUG...GAUGC AGGCC...UAA-3'@LB@ GUGA ACUGGGGGC GAGCGAUG@LB@ ||:| |||||::|| ||||:|||@LB@ CAUU UGACCUUCG CUCGUUAC@LB@3'-UUU...CGAUU A UUACA AGCAC...GCG-5'@LB@ | |@LB@ 67 39@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -25.5951 kcal/mol@LB@Unfolding Energy - mRNA 7.44461 kcal/mol@LB@Unfolding Energy - sRNA 3.30497 kcal/mol@LB@@LB@Position - mRNA 128 -- 148@LB@Position - sRNA 40 -- 66@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 50 |
0.004678 |
0.2905 |
b0906 |
ycaP |
-14.80 |
0.029952 |
1 -- 24 |
40 -- 67 |
UPF0702 family putative inner membrane protein |
|
______________1____________________________25\n______________|____________________________|\n___________5'-___UUU_______________________GAAUC...UCU-3'\n______________AGU___UGCUGGAAGC_____GAGCGAUG\n______________|||___|:||||||||_____||||:|||\n______________UCA___AUGACCUUCG_____CUCGUUAC\n3'-UUU...CCGAU___UU___________UUACA________AGCAC...GCG-5'\n_____________|_____________________________|\n_____________68____________________________39\n |
18 -- 24 |
40 -- 46 |
-27.5061 kcal/mol |
9.39751 kcal/mol |
3.30504 kcal/mol |
1 25@LB@ | |@LB@ 5'- UUU GAAUC...UCU-3'@LB@ AGU UGCUGGAAGC GAGCGAUG@LB@ ||| |:|||||||| ||||:|||@LB@ UCA AUGACCUUCG CUCGUUAC@LB@3'-UUU...CCGAU UU UUACA AGCAC...GCG-5'@LB@ | |@LB@ 68 39@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -27.5061 kcal/mol@LB@Unfolding Energy - mRNA 9.39751 kcal/mol@LB@Unfolding Energy - sRNA 3.30504 kcal/mol@LB@@LB@Position - mRNA 1 -- 24@LB@Position - sRNA 40 -- 67@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 94 |
0.009954 |
0.3393 |
b2208 |
napF |
-14.80 |
0.029998 |
183 -- 242 |
1 -- 65 |
ferredoxin-type protein role in electron transfer to periplasmic nitrate reductase NapA |
|
_____________182____________________________________________________________________243\n_____________|______________________________________________________________________|\n5'-CCA...CGCGU_____A______GU________AG_U__A_____A_____________U_____CAUA__CA________UGGCG...UUC-3'\n______________UAAUG_UGGAAG__CAAUGUGA__A_UG___UGC________UC_CCG_CGGGG____CU__CUGGUCGC\n______________||||:_||||||__||||||||__|_||___|||________||_|||_||:||____||__|||:||||\n______________AUUAU_ACCUUC__GUUACACU__U_AC___ACG________AG_GGC_GCUCC____GA__GACUAGCG\n3'-UUU...GAUUC_____G________________CG_U__AGC___AAAGUCCA__A_________CA____AG________-5'\n_____________|_____________________________________________________________________|\n_____________66____________________________________________________________________1\n |
236 -- 242 |
1 -- 7 |
-47.7557 kcal/mol |
18.8316 kcal/mol |
14.1245 kcal/mol |
182 243@LB@ | |@LB@5'-CCA...CGCGU A GU AG U A A U CAUA CA UGGCG...UUC-3'@LB@ UAAUG UGGAAG CAAUGUGA A UG UGC UC CCG CGGGG CU CUGGUCGC@LB@ ||||: |||||| |||||||| | || ||| || ||| ||:|| || |||:||||@LB@ AUUAU ACCUUC GUUACACU U AC ACG AG GGC GCUCC GA GACUAGCG@LB@3'-UUU...GAUUC G CG U AGC AAAGUCCA A CA AG -5'@LB@ | |@LB@ 66 1@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -47.7557 kcal/mol@LB@Unfolding Energy - mRNA 18.8316 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 183 -- 242@LB@Position - sRNA 1 -- 65@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 16 |
0.00116 |
0.2406 |
b0221 |
fadE |
-14.73 |
0.030789 |
87 -- 104 |
36 -- 53 |
acyl coenzyme A dehydrogenase |
|
_____________86_________________105\n_____________|__________________|\n5'-GUG...AGCAA__________UU______AAUUA...GGA-3'\n______________CAAUGUGAGC__UGUUGU\n______________||||||||||__|||:||\n______________GUUACACUCG__ACAGCA\n3'-UUU...CCUUC__________UU______CGAAA...GCG-5'\n_____________|__________________|\n_____________54_________________35\n |
90 -- 96 |
44 -- 50 |
-23.2381 kcal/mol |
5.2956 kcal/mol |
3.20883 kcal/mol |
86 105@LB@ | |@LB@5'-GUG...AGCAA UU AAUUA...GGA-3'@LB@ CAAUGUGAGC UGUUGU@LB@ |||||||||| |||:||@LB@ GUUACACUCG ACAGCA@LB@3'-UUU...CCUUC UU CGAAA...GCG-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.2381 kcal/mol@LB@Unfolding Energy - mRNA 5.2956 kcal/mol@LB@Unfolding Energy - sRNA 3.20883 kcal/mol@LB@@LB@Position - mRNA 87 -- 104@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 60 |
0.005592 |
0.2905 |
b3577 |
yiaM |
-14.71 |
0.031138 |
209 -- 232 |
41 -- 64 |
2 3-diketo-L-gulonate TRAP transporter small permease protein |
|
_____________208______________________233\n_____________|________________________|\n5'-UUC...AAAAA______C________ACU______UAAUC...GCA-3'\n______________AAUACU_GAAGCAAU___GGCGAU\n______________||||||_||||||||___:||:||\n______________UUAUGA_CUUCGUUA___UCGUUA\n3'-UUU...AUUCA______C________CAC______CAGCA...GCG-5'\n_____________|________________________|\n_____________65_______________________40\n |
217 -- 223 |
50 -- 56 |
-21.6131 kcal/mol |
3.60615 kcal/mol |
3.30185 kcal/mol |
208 233@LB@ | |@LB@5'-UUC...AAAAA C ACU UAAUC...GCA-3'@LB@ AAUACU GAAGCAAU GGCGAU@LB@ |||||| |||||||| :||:||@LB@ UUAUGA CUUCGUUA UCGUUA@LB@3'-UUU...AUUCA C CAC CAGCA...GCG-5'@LB@ | |@LB@ 65 40@LB@@LB@@LB@Energy -14.71 kcal/mol@LB@Hybridization Energy -21.6131 kcal/mol@LB@Unfolding Energy - mRNA 3.60615 kcal/mol@LB@Unfolding Energy - sRNA 3.30185 kcal/mol@LB@@LB@Position - mRNA 209 -- 232@LB@Position - sRNA 41 -- 64@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 48 |
0.004482 |
0.2905 |
b4045 |
yjbJ |
-14.69 |
0.031336 |
242 -- 268 |
42 -- 68 |
stress-induced protein UPF0337 family |
|
_____________241___________________________269\n_____________|_____________________________|\n5'-CGU...UUUAA________G__AAA_______________ACUGA...AAG-3'\n______________AGGUAA_A_UG___GAGCAAUG_GGGCAA\n______________|:||||_|_||___:|||||||_|:||||\n______________UUCAUU_U_AC___UUCGUUAC_CUCGUU\n3'-UUU...ACCGA______A_G__C__________A______ACAGC...GCG-5'\n_____________|_____________________________|\n_____________69____________________________41\n |
256 -- 262 |
49 -- 55 |
-22.1594 kcal/mol |
4.16538 kcal/mol |
3.30492 kcal/mol |
241 269@LB@ | |@LB@5'-CGU...UUUAA G AAA ACUGA...AAG-3'@LB@ AGGUAA A UG GAGCAAUG GGGCAA@LB@ |:|||| | || :||||||| |:||||@LB@ UUCAUU U AC UUCGUUAC CUCGUU@LB@3'-UUU...ACCGA A G C A ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -14.69 kcal/mol@LB@Hybridization Energy -22.1594 kcal/mol@LB@Unfolding Energy - mRNA 4.16538 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 242 -- 268@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 49 -- 55@LB@ |
