| 150 |
0.01825 |
0.4072 |
b3255 |
accB |
-12.43 |
0.075652 |
231 -- 278 |
1 -- 47 |
acetyl CoA carboxylase BCCP subunit |
|
_____________230_______________________________________________279\n_____________|_________________________________________________|\n5'-UUU...UGAUC____UG_____AAGAA_____CA______AACU__AAA_______AG__GAAGA...GCC-3'\n______________GAGC___GUUG_____UCAGG__UCUCCG____GG___UUUCUGA__GC\n______________||||___||:|_____|||||__||||||____||___||:||||__||\n______________CUCG___CAGC_____AGUCC__AGAGGC____CC___AAGGACU__CG\n3'-UUU...UUACA____UUA____ACGAA_____A_______GCU___CAG_______AG__-5'\n_____________|________________________________________________|\n_____________48_______________________________________________1\n |
268 -- 274 |
5 -- 11 |
-38.2829 kcal/mol |
12.4901 kcal/mol |
13.3604 kcal/mol |
230 279@LB@ | |@LB@5'-UUU...UGAUC UG AAGAA CA AACU AAA AG GAAGA...GCC-3'@LB@ GAGC GUUG UCAGG UCUCCG GG UUUCUGA GC@LB@ |||| ||:| ||||| |||||| || ||:|||| ||@LB@ CUCG CAGC AGUCC AGAGGC CC AAGGACU CG@LB@3'-UUU...UUACA UUA ACGAA A GCU CAG AG -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -12.43 kcal/mol@LB@Hybridization Energy -38.2829 kcal/mol@LB@Unfolding Energy - mRNA 12.4901 kcal/mol@LB@Unfolding Energy - sRNA 13.3604 kcal/mol@LB@@LB@Position - mRNA 231 -- 278@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 52 |
0.004779 |
0.2905 |
b4122 |
fumB |
-12.31 |
0.079331 |
182 -- 204 |
48 -- 68 |
anaerobic class I fumarate hydratase (fumarase B) |
|
_____________181_____________________205\n_____________|_______________________|\n5'-UCC...AUACA____UACAG_________U____CAAAC...ACU-3'\n______________GAGU_____GCUGGAAGC_AUGU\n______________:|||_____:||||||||_||||\n______________UUCA_____UGACCUUCG_UACA\n3'-UUU...ACCGA____UUA___________U____CUCGU...GCG-5'\n_____________|_______________________|\n_____________69______________________47\n |
193 -- 199 |
53 -- 59 |
-20.6346 kcal/mol |
5.29507 kcal/mol |
3.03052 kcal/mol |
181 205@LB@ | |@LB@5'-UCC...AUACA UACAG U CAAAC...ACU-3'@LB@ GAGU GCUGGAAGC AUGU@LB@ :||| :|||||||| ||||@LB@ UUCA UGACCUUCG UACA@LB@3'-UUU...ACCGA UUA U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -20.6346 kcal/mol@LB@Unfolding Energy - mRNA 5.29507 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 182 -- 204@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 87 |
0.008915 |
0.3393 |
b2530 |
iscS |
-12.30 |
0.079567 |
175 -- 203 |
40 -- 68 |
cysteine desulfurase (tRNA sulfurtransferase) PLP-dependent |
|
_____________174___________________________204\n_____________|_____________________________|\n5'-AAG...GCAUU________UAC_____UUAUA________AAAUU...UUG-3'\n______________GAGUGAUG___GGAGU_____GAGCAAUG\n______________:|||:||:___|:||:_____||||||||\n______________UUCAUUAU___CUUCG_____CUCGUUAC\n3'-UUU...ACCGA________GAC_____UUACA________AGCAC...GCG-5'\n_____________|_____________________________|\n_____________69____________________________39\n |
197 -- 203 |
40 -- 46 |
-22.6486 kcal/mol |
7.04226 kcal/mol |
3.30507 kcal/mol |
174 204@LB@ | |@LB@5'-AAG...GCAUU UAC UUAUA AAAUU...UUG-3'@LB@ GAGUGAUG GGAGU GAGCAAUG@LB@ :|||:||: |:||: ||||||||@LB@ UUCAUUAU CUUCG CUCGUUAC@LB@3'-UUU...ACCGA GAC UUACA AGCAC...GCG-5'@LB@ | |@LB@ 69 39@LB@@LB@@LB@Energy -12.30 kcal/mol@LB@Hybridization Energy -22.6486 kcal/mol@LB@Unfolding Energy - mRNA 7.04226 kcal/mol@LB@Unfolding Energy - sRNA 3.30507 kcal/mol@LB@@LB@Position - mRNA 175 -- 203@LB@Position - sRNA 40 -- 68@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 44 |
0.003649 |
0.2787 |
b0147 |
ligT |
-12.24 |
0.081601 |
33 -- 98 |
26 -- 85 |
2'-5' RNA ligase |
|
_____________32____________________________________________________________________99\n_____________|_____________________________________________________________________|\n5'-CCA...AUUUC____________C___GCACUUAA_____C___C__C___CAAUCGA_______AA___AA________AAGAC...CGG-3'\n______________CCGGC_CCCGGU_GGC________UAAUA_CUG_GG_GCA_______GAGCGGU___GU___UUCAGGU\n______________||:||_|||||:_|||________|||||_|||_|:_|||_______||||::|___||___|||||||\n______________GGUCG_GGGCCG_CCG________AUUAU_GAC_CU_CGU_______CUCGUUA___CA___AAGUCCA\n______3'-UUUUC_____U______A___AUUC________________U___UACA__________CAG__CGA_______AGAGG...GCG-5'\n_____________|_____________________________________________________________________|\n_____________86____________________________________________________________________25\n |
92 -- 98 |
26 -- 32 |
-49.8324 kcal/mol |
18.0057 kcal/mol |
19.5911 kcal/mol |
32 99@LB@ | |@LB@5'-CCA...AUUUC C GCACUUAA C C C CAAUCGA AA AA AAGAC...CGG-3'@LB@ CCGGC CCCGGU GGC UAAUA CUG GG GCA GAGCGGU GU UUCAGGU@LB@ ||:|| |||||: ||| ||||| ||| |: ||| ||||::| || |||||||@LB@ GGUCG GGGCCG CCG AUUAU GAC CU CGU CUCGUUA CA AAGUCCA@LB@ 3'-UUUUC U A AUUC U UACA CAG CGA AGAGG...GCG-5'@LB@ | |@LB@ 86 25@LB@@LB@@LB@Energy -12.24 kcal/mol@LB@Hybridization Energy -49.8324 kcal/mol@LB@Unfolding Energy - mRNA 18.0057 kcal/mol@LB@Unfolding Energy - sRNA 19.5911 kcal/mol@LB@@LB@Position - mRNA 33 -- 98@LB@Position - sRNA 26 -- 85@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 182 |
0.02236 |
0.4113 |
b2206 |
napA |
-12.10 |
0.085901 |
76 -- 101 |
42 -- 66 |
nitrate reductase periplasmic large subunit |
|
_____________75_________________________102\n_____________|__________________________|\n5'-GAC...UGAUU______G_________AAGAC_____AACGC...UUG-3'\n______________GUGGUG_UGGAAGCAG_____AGCGA\n______________||::|:_||||||||:_____|||:|\n______________CAUUAU_ACCUUCGUU_____UCGUU\n3'-UUU...CGAUU______G_________ACAC______ACAGC...GCG-5'\n_____________|__________________________|\n_____________67_________________________41\n |
85 -- 91 |
51 -- 57 |
-24.6932 kcal/mol |
9.28668 kcal/mol |
3.30477 kcal/mol |
75 102@LB@ | |@LB@5'-GAC...UGAUU G AAGAC AACGC...UUG-3'@LB@ GUGGUG UGGAAGCAG AGCGA@LB@ ||::|: ||||||||: |||:|@LB@ CAUUAU ACCUUCGUU UCGUU@LB@3'-UUU...CGAUU G ACAC ACAGC...GCG-5'@LB@ | |@LB@ 67 41@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -24.6932 kcal/mol@LB@Unfolding Energy - mRNA 9.28668 kcal/mol@LB@Unfolding Energy - sRNA 3.30477 kcal/mol@LB@@LB@Position - mRNA 76 -- 101@LB@Position - sRNA 42 -- 66@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 189 |
0.02313 |
0.4113 |
b2438 |
eutK |
-12.08 |
0.086588 |
220 -- 243 |
37 -- 62 |
putative ethanol utilization carboxysome structural protein |
|
_____________219________________________244\n_____________|__________________________|\n5'-CGA...GGGAU____________AC______UG____CCGCG...GUC-3'\n______________UGCUGGAAGUGG____GGCA__GUCG\n______________|:|||||||:::____:|||__||||\n______________AUGACCUUCGUU____UCGU__CAGC\n3'-UUU...UCAUU____________ACAC____UA____ACGAA...GCG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
224 -- 230 |
52 -- 58 |
-25.7957 kcal/mol |
10.4122 kcal/mol |
3.3026 kcal/mol |
219 244@LB@ | |@LB@5'-CGA...GGGAU AC UG CCGCG...GUC-3'@LB@ UGCUGGAAGUGG GGCA GUCG@LB@ |:|||||||::: :||| ||||@LB@ AUGACCUUCGUU UCGU CAGC@LB@3'-UUU...UCAUU ACAC UA ACGAA...GCG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -25.7957 kcal/mol@LB@Unfolding Energy - mRNA 10.4122 kcal/mol@LB@Unfolding Energy - sRNA 3.3026 kcal/mol@LB@@LB@Position - mRNA 220 -- 243@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 89 |
0.009246 |
0.3393 |
b1279 |
yciS |
-12.08 |
0.086714 |
189 -- 204 |
46 -- 61 |
DUF1049 family inner membrane protein function unknown |
|
_____________188______________205\n_____________|________________|\n5'-ACC...ACAUA__G_____________AAUAU...UGU-3'\n______________AC_GGAAGUAAUGUGA\n______________||_|||||:|||||||\n______________UG_CCUUCGUUACACU\n3'-UUU...CAUUA__A_____________CGUUA...GCG-5'\n_____________|________________|\n_____________62_______________45\n |
198 -- 204 |
46 -- 52 |
-21.4875 kcal/mol |
6.16612 kcal/mol |
3.24422 kcal/mol |
188 205@LB@ | |@LB@5'-ACC...ACAUA G AAUAU...UGU-3'@LB@ AC GGAAGUAAUGUGA@LB@ || |||||:|||||||@LB@ UG CCUUCGUUACACU@LB@3'-UUU...CAUUA A CGUUA...GCG-5'@LB@ | |@LB@ 62 45@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -21.4875 kcal/mol@LB@Unfolding Energy - mRNA 6.16612 kcal/mol@LB@Unfolding Energy - sRNA 3.24422 kcal/mol@LB@@LB@Position - mRNA 189 -- 204@LB@Position - sRNA 46 -- 61@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 180 |
0.02216 |
0.4113 |
b4123 |
dcuB |
-12.05 |
0.087474 |
186 -- 195 |
12 -- 21 |
C4-dicarboxylate transporter anaerobic; DcuS co-sensor |
|
_____________185________196\n_____________|__________|\n5'-UCU...AUUAU__________CACAC...UGG-3'\n______________CGCGAGGGUU\n______________|||||||||:\n______________GCGCUCCCAG\n3'-UUU...AAGAG__________AAGGA...GCG-5'\n_____________|__________|\n_____________22_________11\n |
189 -- 195 |
12 -- 18 |
-19.9032 kcal/mol |
3.47865 kcal/mol |
4.37028 kcal/mol |
185 196@LB@ | |@LB@5'-UCU...AUUAU CACAC...UGG-3'@LB@ CGCGAGGGUU@LB@ |||||||||:@LB@ GCGCUCCCAG@LB@3'-UUU...AAGAG AAGGA...GCG-5'@LB@ | |@LB@ 22 11@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -19.9032 kcal/mol@LB@Unfolding Energy - mRNA 3.47865 kcal/mol@LB@Unfolding Energy - sRNA 4.37028 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 12 -- 21@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 68 |
0.00588 |
0.2905 |
b4222 |
ytfP |
-12.04 |
0.087961 |
130 -- 151 |
48 -- 68 |
GGCT-like protein |
|
_____________129____________________152\n_____________|______________________|\n5'-ACC...UGCCU___CU___U________C____CUGGU...ACC-3'\n______________AAG__AUA_CUGGAAGC_GUGU\n______________|||__|||_||||||||_:|||\n______________UUC__UAU_GACCUUCG_UACA\n3'-UUU...ACCGA___AU____________U____CUCGU...GCG-5'\n_____________|______________________|\n_____________69_____________________47\n |
140 -- 146 |
53 -- 59 |
-18.8807 kcal/mol |
3.81035 kcal/mol |
3.03052 kcal/mol |
129 152@LB@ | |@LB@5'-ACC...UGCCU CU U C CUGGU...ACC-3'@LB@ AAG AUA CUGGAAGC GUGU@LB@ ||| ||| |||||||| :|||@LB@ UUC UAU GACCUUCG UACA@LB@3'-UUU...ACCGA AU U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -18.8807 kcal/mol@LB@Unfolding Energy - mRNA 3.81035 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 130 -- 151@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 127 |
0.01387 |
0.3627 |
b1224 |
narG |
-12.01 |
0.089072 |
151 -- 160 |
37 -- 46 |
nitrate reductase 1 alpha subunit |
|
_____________150________161\n_____________|__________|\n5'-UAA...ACAUU__________AUUUA...AGG-3'\n______________AGCAAUGUCG\n______________||||||||||\n______________UCGUUACAGC\n3'-UUU...UACAC__________ACGAA...GCG-5'\n_____________|__________|\n_____________47_________36\n |
154 -- 160 |
37 -- 43 |
-14.8133 kcal/mol |
1.65076 kcal/mol |
1.15554 kcal/mol |
150 161@LB@ | |@LB@5'-UAA...ACAUU AUUUA...AGG-3'@LB@ AGCAAUGUCG@LB@ ||||||||||@LB@ UCGUUACAGC@LB@3'-UUU...UACAC ACGAA...GCG-5'@LB@ | |@LB@ 47 36@LB@@LB@@LB@Energy -12.01 kcal/mol@LB@Hybridization Energy -14.8133 kcal/mol@LB@Unfolding Energy - mRNA 1.65076 kcal/mol@LB@Unfolding Energy - sRNA 1.15554 kcal/mol@LB@@LB@Position - mRNA 151 -- 160@LB@Position - sRNA 37 -- 46@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 37 -- 43@LB@ |
