| 39 |
0.003417 |
0.2776 |
b4469 |
ygiQ |
-15.58 |
0.022035 |
190 -- 206 |
44 -- 60 |
Radical SAM superfamily protein |
|
_____________189_______________207\n_____________|_________________|\n5'-GCG...CAUUU__________AA_____UCUAU...CUC-3'\n______________CUGGAAGCAA__UGAGC\n______________||||||||||__|||||\n______________GACCUUCGUU__ACUCG\n3'-UUU...AUUAU__________AC_____UUACA...GCG-5'\n_____________|_________________|\n_____________61________________43\n |
193 -- 199 |
51 -- 57 |
-24.5566 kcal/mol |
5.6787 kcal/mol |
3.2985 kcal/mol |
189 207@LB@ | |@LB@5'-GCG...CAUUU AA UCUAU...CUC-3'@LB@ CUGGAAGCAA UGAGC@LB@ |||||||||| |||||@LB@ GACCUUCGUU ACUCG@LB@3'-UUU...AUUAU AC UUACA...GCG-5'@LB@ | |@LB@ 61 43@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -24.5566 kcal/mol@LB@Unfolding Energy - mRNA 5.6787 kcal/mol@LB@Unfolding Energy - sRNA 3.2985 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 44 -- 60@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 5 |
0.0002772 |
0.1521 |
b3365 |
nirB |
-15.55 |
0.022306 |
192 -- 212 |
38 -- 57 |
nitrite reductase large subunit NAD(P)H-binding |
|
_____________191___________________213\n_____________|_____________________|\n5'-AUC...AAAUC_______AAA_______A___AGACU...UUA-3'\n______________GAGGCAA___UGAGCAA_GUC\n______________||:||||___|||||||_|||\n______________CUUCGUU___ACUCGUU_CAG\n3'-UUU...AUGAC_______AC________A___CACGA...GCG-5'\n_____________|_____________________|\n_____________58____________________37\n |
202 -- 208 |
42 -- 48 |
-22.0527 kcal/mol |
3.28811 kcal/mol |
3.2161 kcal/mol |
191 213@LB@ | |@LB@5'-AUC...AAAUC AAA A AGACU...UUA-3'@LB@ GAGGCAA UGAGCAA GUC@LB@ ||:|||| ||||||| |||@LB@ CUUCGUU ACUCGUU CAG@LB@3'-UUU...AUGAC AC A CACGA...GCG-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -22.0527 kcal/mol@LB@Unfolding Energy - mRNA 3.28811 kcal/mol@LB@Unfolding Energy - sRNA 3.2161 kcal/mol@LB@@LB@Position - mRNA 192 -- 212@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 43 |
0.003552 |
0.2776 |
b3453 |
ugpB |
-15.55 |
0.022327 |
231 -- 272 |
40 -- 85 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________230______________________________________________273\n_____________|________________________________________________|\n5'-UUC...CAGCA___________A_____GU_______G_____U___CA__________ACGAC...UGG-3'\n______________CUGGCGCUCGG_CUGGC____UAAUG__GGAA_GCA_____GGCAGUG\n______________|::||:|:|||_|||||____||||:__||||_|||_____:|||:||\n______________GGUCGUGGGCC_GACCG____AUUAU__CCUU_CGU_____UCGUUAC\n______3'-UUUUC_________________AUUC_____GA________UACAC_______AGCAC...GCG-5'\n_____________|________________________________________________|\n_____________86_______________________________________________39\n |
266 -- 272 |
40 -- 46 |
-44.9281 kcal/mol |
14.4718 kcal/mol |
14.9103 kcal/mol |
230 273@LB@ | |@LB@5'-UUC...CAGCA A GU G U CA ACGAC...UGG-3'@LB@ CUGGCGCUCGG CUGGC UAAUG GGAA GCA GGCAGUG@LB@ |::||:|:||| ||||| ||||: |||| ||| :|||:||@LB@ GGUCGUGGGCC GACCG AUUAU CCUU CGU UCGUUAC@LB@ 3'-UUUUC AUUC GA UACAC AGCAC...GCG-5'@LB@ | |@LB@ 86 39@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -44.9281 kcal/mol@LB@Unfolding Energy - mRNA 14.4718 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 231 -- 272@LB@Position - sRNA 40 -- 85@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 69 |
0.006014 |
0.2917 |
b3416 |
malQ |
-15.44 |
0.023264 |
163 -- 216 |
38 -- 88 |
4-alpha-glucanotransferase (amylomaltase) |
|
_____________162_____________________________________________________217\n_____________|_______________________________________________________|\n5'-GCG...UUAUC_____C_________A___AAAACGCUAA_______UC____GAA_____AC___UGGAU...CCA-3'\n______________AGGCU_GUAUCUGGC_GGC___________GGAAGC__GAUG___AGCAA__GUC\n______________|:||:_|:|:|:|||_|||___________||||||__:|||___|||||__|||\n______________UUCGG_CGUGGGCCG_CCG___________CCUUCG__UUAC___UCGUU__CAG\n_________3'-UU_____U_________A___AUUCAUUAUGA____________AC______A____CACGA...GCG-5'\n_____________|_______________________________________________________|\n_____________89______________________________________________________37\n |
171 -- 177 |
74 -- 80 |
-43.8565 kcal/mol |
13.5036 kcal/mol |
14.9106 kcal/mol |
162 217@LB@ | |@LB@5'-GCG...UUAUC C A AAAACGCUAA UC GAA AC UGGAU...CCA-3'@LB@ AGGCU GUAUCUGGC GGC GGAAGC GAUG AGCAA GUC@LB@ |:||: |:|:|:||| ||| |||||| :||| ||||| |||@LB@ UUCGG CGUGGGCCG CCG CCUUCG UUAC UCGUU CAG@LB@ 3'-UU U A AUUCAUUAUGA AC A CACGA...GCG-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -43.8565 kcal/mol@LB@Unfolding Energy - mRNA 13.5036 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 163 -- 216@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 107 |
0.0112 |
0.3489 |
b3012 |
dkgA |
-15.28 |
0.024842 |
250 -- 292 |
50 -- 87 |
2 5-diketo-D-gluconate reductase A |
|
_____________249__________________________________________293\n_____________|____________________________________________|\n5'-CUG...GCCCC______G___G___GUC____AAGC________A__________CACCGCCA-3'\n______________AGCUGG_ACU_GGC___UGGC____AAGUAAUG__GGAAGUAAU\n______________|||::|_||:_|||___||||____|||||||:__|||||:|||\n______________UCGGUC_UGG_CCG___ACCG____UUCAUUAU__CCUUCGUUA\n________3'-UUU______G___G__________A___________GA_________CACUC...GCG-5'\n_____________|____________________________________________|\n_____________88___________________________________________49\n |
286 -- 292 |
50 -- 56 |
-41.0731 kcal/mol |
11.2031 kcal/mol |
14.5934 kcal/mol |
249 293@LB@ | |@LB@5'-CUG...GCCCC G G GUC AAGC A CACCGCCA-3'@LB@ AGCUGG ACU GGC UGGC AAGUAAUG GGAAGUAAU@LB@ |||::| ||: ||| |||| |||||||: |||||:|||@LB@ UCGGUC UGG CCG ACCG UUCAUUAU CCUUCGUUA@LB@ 3'-UUU G G A GA CACUC...GCG-5'@LB@ | |@LB@ 88 49@LB@@LB@@LB@Energy -15.28 kcal/mol@LB@Hybridization Energy -41.0731 kcal/mol@LB@Unfolding Energy - mRNA 11.2031 kcal/mol@LB@Unfolding Energy - sRNA 14.5934 kcal/mol@LB@@LB@Position - mRNA 250 -- 292@LB@Position - sRNA 50 -- 87@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 125 |
0.0136 |
0.3627 |
b3647 |
ligB |
-15.20 |
0.025592 |
210 -- 279 |
1 -- 59 |
DNA ligase NAD(+)-dependent |
|
_____________209_____________________________________________________________________280\n_____________|_______________________________________________________________________|\n5'-GGC...AAGUA____U______AUUAAUA____UC________GG__AUCA___G______C_____GUCCGG_________CAGCC...AAA-3'\n______________UGGA_GGCGAU_______GGUA___UUGUGCU__CA____UCU_UGUGGG_GGUCU______CCUGGUCGC\n______________||||_:||:||_______:|:|___|:|||||__||____|||_:|:|:|_|||||______||||:||||\n______________ACCU_UCGUUA_______UCGU___AGCACGA__GU____AGA_GCGCUC_CCAGA______GGACUAGCG\n3'-UUU...UUAUG___________CAC________UAC_______AA__CCA____G____________A______________-5'\n_____________|______________________________________________________________________|\n_____________60_____________________________________________________________________1\n |
273 -- 279 |
1 -- 7 |
-52.2567 kcal/mol |
22.9457 kcal/mol |
14.1095 kcal/mol |
209 280@LB@ | |@LB@5'-GGC...AAGUA U AUUAAUA UC GG AUCA G C GUCCGG CAGCC...AAA-3'@LB@ UGGA GGCGAU GGUA UUGUGCU CA UCU UGUGGG GGUCU CCUGGUCGC@LB@ |||| :||:|| :|:| |:||||| || ||| :|:|:| ||||| ||||:||||@LB@ ACCU UCGUUA UCGU AGCACGA GU AGA GCGCUC CCAGA GGACUAGCG@LB@3'-UUU...UUAUG CAC UAC AA CCA G A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -15.20 kcal/mol@LB@Hybridization Energy -52.2567 kcal/mol@LB@Unfolding Energy - mRNA 22.9457 kcal/mol@LB@Unfolding Energy - sRNA 14.1095 kcal/mol@LB@@LB@Position - mRNA 210 -- 279@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 65 |
0.005781 |
0.2905 |
b0934 |
ssuC |
-15.17 |
0.025944 |
17 -- 44 |
19 -- 47 |
aliphatic sulfonate ABC transporter permease |
|
_____________16____________________________45\n_____________|_____________________________|\n5'-UGC...GCAUC_______U_____________CUA_____AUCUG...GGC-3'\n______________GA_CAGU_UUGUGCUUUCGGG___UCCGC\n______________||_||:|_|:||||||||:||___|||||\n______________CU_GUUA_AGCACGAAAGUCC___AGGCG\n3'-UUU...UUACA__C____C_____________AAG_____CUCCC...GCG-5'\n_____________|_____________________________|\n_____________48____________________________18\n |
26 -- 32 |
31 -- 37 |
-34.9159 kcal/mol |
9.62465 kcal/mol |
10.1243 kcal/mol |
16 45@LB@ | |@LB@5'-UGC...GCAUC U CUA AUCUG...GGC-3'@LB@ GA CAGU UUGUGCUUUCGGG UCCGC@LB@ || ||:| |:||||||||:|| |||||@LB@ CU GUUA AGCACGAAAGUCC AGGCG@LB@3'-UUU...UUACA C C AAG CUCCC...GCG-5'@LB@ | |@LB@ 48 18@LB@@LB@@LB@Energy -15.17 kcal/mol@LB@Hybridization Energy -34.9159 kcal/mol@LB@Unfolding Energy - mRNA 9.62465 kcal/mol@LB@Unfolding Energy - sRNA 10.1243 kcal/mol@LB@@LB@Position - mRNA 17 -- 44@LB@Position - sRNA 19 -- 47@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 75 |
0.007199 |
0.3134 |
b2167 |
fruA |
-15.16 |
0.026023 |
90 -- 122 |
43 -- 84 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________89_________________________________________123\n_____________|__________________________________________|\n5'-CGC...UGUUG____________________CA____________________UUACC...AAA-3'\n______________CAGC_CCUGGC_GG_UAAGU________AAGCAAUGUGGGUA\n______________||||_||:|||_||_|||||________||||||||||:|:|\n______________GUCG_GGGCCG_CC_AUUCA________UUCGUUACACUCGU\n_____3'-UUUUCG____U______A__G_____UUAUGACC______________UACAG...GCG-5'\n_____________|__________________________________________|\n_____________85_________________________________________42\n |
116 -- 122 |
43 -- 49 |
-41.7817 kcal/mol |
11.7261 kcal/mol |
14.8963 kcal/mol |
89 123@LB@ | |@LB@5'-CGC...UGUUG CA UUACC...AAA-3'@LB@ CAGC CCUGGC GG UAAGU AAGCAAUGUGGGUA@LB@ |||| ||:||| || ||||| ||||||||||:|:|@LB@ GUCG GGGCCG CC AUUCA UUCGUUACACUCGU@LB@ 3'-UUUUCG U A G UUAUGACC UACAG...GCG-5'@LB@ | |@LB@ 85 42@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -41.7817 kcal/mol@LB@Unfolding Energy - mRNA 11.7261 kcal/mol@LB@Unfolding Energy - sRNA 14.8963 kcal/mol@LB@@LB@Position - mRNA 90 -- 122@LB@Position - sRNA 43 -- 84@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 92 |
0.009626 |
0.3393 |
b3811 |
xerC |
-15.13 |
0.026359 |
57 -- 92 |
33 -- 64 |
site-specific tyrosine recombinase |
|
_____________56___________________________________93\n_____________|____________________________________|\n5'-CCA...AUGUC______G__________C___UUUG___________GUUUA...UUG-3'\n______________GAUGCU_GGAAGCGAUG_UGA____GGUGUCGUGCU\n______________:||:||_||||||:|||_|||____::|||||||||\n______________UUAUGA_CCUUCGUUAC_ACU____UUACAGCACGA\n3'-UUU...AUUCA_____________________CG_____________AAGUC...GCG-5'\n_____________|____________________________________|\n_____________65___________________________________32\n |
83 -- 89 |
36 -- 42 |
-41.1335 kcal/mol |
19.2369 kcal/mol |
6.76965 kcal/mol |
56 93@LB@ | |@LB@5'-CCA...AUGUC G C UUUG GUUUA...UUG-3'@LB@ GAUGCU GGAAGCGAUG UGA GGUGUCGUGCU@LB@ :||:|| ||||||:||| ||| ::|||||||||@LB@ UUAUGA CCUUCGUUAC ACU UUACAGCACGA@LB@3'-UUU...AUUCA CG AAGUC...GCG-5'@LB@ | |@LB@ 65 32@LB@@LB@@LB@Energy -15.13 kcal/mol@LB@Hybridization Energy -41.1335 kcal/mol@LB@Unfolding Energy - mRNA 19.2369 kcal/mol@LB@Unfolding Energy - sRNA 6.76965 kcal/mol@LB@@LB@Position - mRNA 57 -- 92@LB@Position - sRNA 33 -- 64@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 51 |
0.00476 |
0.2905 |
b3607 |
cysE |
-15.05 |
0.027128 |
184 -- 209 |
34 -- 63 |
serine acetyltransferase |
|
_____________183_____________________________210\n_____________|_______________________________|\n5'-CGG...AUCUC__CG__U________________________GAAGA...CGA-3'\n______________AU__UG_GGAGUA_____AGCAAUGUCGUGU\n______________||__||_|:||:|_____||||||||||||:\n______________UA__AC_CUUCGU_____UCGUUACAGCACG\n3'-UUU...UUCAU__UG_________UACAC_____________AAAGU...GCG-5'\n_____________|_______________________________|\n_____________64______________________________33\n |
203 -- 209 |
34 -- 40 |
-26.8035 kcal/mol |
4.97985 kcal/mol |
6.76935 kcal/mol |
183 210@LB@ | |@LB@5'-CGG...AUCUC CG U GAAGA...CGA-3'@LB@ AU UG GGAGUA AGCAAUGUCGUGU@LB@ || || |:||:| ||||||||||||:@LB@ UA AC CUUCGU UCGUUACAGCACG@LB@3'-UUU...UUCAU UG UACAC AAAGU...GCG-5'@LB@ | |@LB@ 64 33@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -26.8035 kcal/mol@LB@Unfolding Energy - mRNA 4.97985 kcal/mol@LB@Unfolding Energy - sRNA 6.76935 kcal/mol@LB@@LB@Position - mRNA 184 -- 209@LB@Position - sRNA 34 -- 63@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 34 -- 40@LB@ |
