| 169 |
0.02092 |
0.4072 |
b4471 |
tdcG |
-11.09 |
0.126171 |
119 -- 152 |
36 -- 66 |
L-serine dehydratase 3 anaerobic |
|
_____________118________________________________153\n_____________|__________________________________|\n5'-AAC...AGUAC_______GUA____CUC_______GGACG_____AAGGU...UGG-3'\n______________GUAGUGC___AAGC___GUGAGCG_____GUCGU\n______________|||:|:|___||||___||||||:_____|||||\n______________CAUUAUG___UUCG___CACUCGU_____CAGCA\n3'-UUU...CGAUU_______ACC____UUA_______UA________CGAAA...GCG-5'\n_____________|__________________________________|\n_____________67_________________________________35\n |
136 -- 142 |
43 -- 49 |
-27.48 kcal/mol |
13.0871 kcal/mol |
3.30555 kcal/mol |
118 153@LB@ | |@LB@5'-AAC...AGUAC GUA CUC GGACG AAGGU...UGG-3'@LB@ GUAGUGC AAGC GUGAGCG GUCGU@LB@ |||:|:| |||| ||||||: |||||@LB@ CAUUAUG UUCG CACUCGU CAGCA@LB@3'-UUU...CGAUU ACC UUA UA CGAAA...GCG-5'@LB@ | |@LB@ 67 35@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -27.48 kcal/mol@LB@Unfolding Energy - mRNA 13.0871 kcal/mol@LB@Unfolding Energy - sRNA 3.30555 kcal/mol@LB@@LB@Position - mRNA 119 -- 152@LB@Position - sRNA 36 -- 66@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 70 |
0.006078 |
0.2917 |
b1612 |
fumA |
-11.08 |
0.126554 |
60 -- 88 |
36 -- 58 |
fumarate hydratase (fumarase A) aerobic Class I |
|
_____________59_____________________________89\n_____________|______________________________|\n5'-AUG...CUACG________CC_______CGCAA__A_____ACUAG...AAU-3'\n______________GGAAGUAA__UG_GAGC_____AA_GUCGU\n______________|||||:||__||_||||_____||_|||||\n______________CCUUCGUU__AC_CUCG_____UU_CAGCA\n3'-UUU...UAUGA____________A___________A_____CGAAA...GCG-5'\n_____________|______________________________|\n_____________59_____________________________35\n |
61 -- 67 |
51 -- 57 |
-19.4215 kcal/mol |
5.11518 kcal/mol |
3.22706 kcal/mol |
59 89@LB@ | |@LB@5'-AUG...CUACG CC CGCAA A ACUAG...AAU-3'@LB@ GGAAGUAA UG GAGC AA GUCGU@LB@ |||||:|| || |||| || |||||@LB@ CCUUCGUU AC CUCG UU CAGCA@LB@3'-UUU...UAUGA A A CGAAA...GCG-5'@LB@ | |@LB@ 59 35@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -19.4215 kcal/mol@LB@Unfolding Energy - mRNA 5.11518 kcal/mol@LB@Unfolding Energy - sRNA 3.22706 kcal/mol@LB@@LB@Position - mRNA 60 -- 88@LB@Position - sRNA 36 -- 58@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 120 |
0.0128 |
0.3585 |
b0445 |
ybaE |
-11.02 |
0.129416 |
154 -- 176 |
41 -- 63 |
putative ABC transporter periplasmic binding protein |
|
_____________153______________________177\n_____________|________________________|\n5'-CGU...GAUAU______________A____A____UAAAU...GUU-3'\n______________AUAC_GGAAGUAAU_GUGA_UAGU\n______________||||_|||||:|||_||||_:|:|\n______________UAUG_CCUUCGUUA_CACU_GUUA\n3'-UUU...UUCAU____A______________C____CAGCA...GCG-5'\n_____________|________________________|\n_____________64_______________________40\n |
159 -- 165 |
51 -- 57 |
-19.1991 kcal/mol |
4.87781 kcal/mol |
3.30177 kcal/mol |
153 177@LB@ | |@LB@5'-CGU...GAUAU A A UAAAU...GUU-3'@LB@ AUAC GGAAGUAAU GUGA UAGU@LB@ |||| |||||:||| |||| :|:|@LB@ UAUG CCUUCGUUA CACU GUUA@LB@3'-UUU...UUCAU A C CAGCA...GCG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -19.1991 kcal/mol@LB@Unfolding Energy - mRNA 4.87781 kcal/mol@LB@Unfolding Energy - sRNA 3.30177 kcal/mol@LB@@LB@Position - mRNA 154 -- 176@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 42 |
0.003478 |
0.2776 |
b1882 |
cheY |
-11.00 |
0.130280 |
3 -- 21 |
36 -- 55 |
chemotaxis regulator transmitting signal to flagellar motor component |
|
_____________2____________________22\n_____________|____________________|\n_________5'-GC__G_____U___________CAGGC...UUG-3'\n______________GG_AAUGU_GGCGAUG_CGU\n______________:|_|||||_:||:|||_|||\n______________UC_UUACA_UCGUUAC_GCA\n3'-UUU...GACCU__G_____C_______A___CGAAA...GCG-5'\n_____________|____________________|\n_____________56___________________35\n |
12 -- 18 |
40 -- 46 |
-18.9303 kcal/mol |
4.70419 kcal/mol |
3.22441 kcal/mol |
2 22@LB@ | |@LB@ 5'-GC G U CAGGC...UUG-3'@LB@ GG AAUGU GGCGAUG CGU@LB@ :| ||||| :||:||| |||@LB@ UC UUACA UCGUUAC GCA@LB@3'-UUU...GACCU G C A CGAAA...GCG-5'@LB@ | |@LB@ 56 35@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -18.9303 kcal/mol@LB@Unfolding Energy - mRNA 4.70419 kcal/mol@LB@Unfolding Energy - sRNA 3.22441 kcal/mol@LB@@LB@Position - mRNA 3 -- 21@LB@Position - sRNA 36 -- 55@LB@Position Seed - mRNA 12 -- 18@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 122 |
0.01331 |
0.3627 |
b0078 |
ilvH |
-10.99 |
0.130728 |
66 -- 84 |
41 -- 61 |
acetolactate synthase 3 small subunit valine-sensitive |
|
_____________65____________________85\n_____________|_____________________|\n5'-GCC...GAGGC_______________C_____AAUCG...UGA-3'\n______________GCUGGAA_CAG_GUG_GCAAU\n______________:||||||_||:_|||_|||||\n______________UGACCUU_GUU_CAC_CGUUA\n3'-UUU...CAUUA_______C___A___U_____CAGCA...GCG-5'\n_____________|_____________________|\n_____________62____________________40\n |
66 -- 72 |
55 -- 61 |
-20.2432 kcal/mol |
5.95009 kcal/mol |
3.30062 kcal/mol |
65 85@LB@ | |@LB@5'-GCC...GAGGC C AAUCG...UGA-3'@LB@ GCUGGAA CAG GUG GCAAU@LB@ :|||||| ||: ||| |||||@LB@ UGACCUU GUU CAC CGUUA@LB@3'-UUU...CAUUA C A U CAGCA...GCG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -20.2432 kcal/mol@LB@Unfolding Energy - mRNA 5.95009 kcal/mol@LB@Unfolding Energy - sRNA 3.30062 kcal/mol@LB@@LB@Position - mRNA 66 -- 84@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 81 |
0.008086 |
0.3318 |
b3114 |
tdcE |
-10.99 |
0.130865 |
237 -- 290 |
38 -- 86 |
pyruvate formate-lyase 4/2-ketobutyrate formate-lyase |
|
_____________236_____________________________________________________291\n_____________|_______________________________________________________|\n5'-AGA...UGUAC____A___A____U_____UUAA_____CGG_______AAACGAAAU________CGCGA...UUA-3'\n______________GCCG_CGC_UGGC_UGGCU____AGGUA___ACUGGAA__________UAAUGUC\n______________|||:_|:|_:|||_|||||____|:|||___|||||||__________:||||||\n______________CGGU_GUG_GCCG_ACCGA____UUCAU___UGACCUU__________GUUACAG\n_______3'-UUUU____C___G___________________UA________CGUUACACUC_______CACGA...GCG-5'\n_____________|_______________________________________________________|\n_____________87______________________________________________________37\n |
284 -- 290 |
38 -- 44 |
-39.8415 kcal/mol |
13.9412 kcal/mol |
14.9106 kcal/mol |
236 291@LB@ | |@LB@5'-AGA...UGUAC A A U UUAA CGG AAACGAAAU CGCGA...UUA-3'@LB@ GCCG CGC UGGC UGGCU AGGUA ACUGGAA UAAUGUC@LB@ |||: |:| :||| ||||| |:||| ||||||| :||||||@LB@ CGGU GUG GCCG ACCGA UUCAU UGACCUU GUUACAG@LB@ 3'-UUUU C G UA CGUUACACUC CACGA...GCG-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -39.8415 kcal/mol@LB@Unfolding Energy - mRNA 13.9412 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 237 -- 290@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 148 |
0.01761 |
0.3998 |
b4262 |
lptG |
-10.98 |
0.131149 |
190 -- 206 |
42 -- 57 |
lipopolysaccharide export ABC permease |
|
_____________189_______________207\n_____________|_________________|\n5'-CCA...GUAAA____________U____CCUUU...UCA-3'\n______________GGAGCGGUGUGA_GCAA\n______________|:|||::|||||_||||\n______________CUUCGUUACACU_CGUU\n3'-UUU...AUGAC_________________ACAGC...GCG-5'\n_____________|_________________|\n_____________58________________41\n |
195 -- 201 |
46 -- 52 |
-21.8951 kcal/mol |
7.70229 kcal/mol |
3.20882 kcal/mol |
189 207@LB@ | |@LB@5'-CCA...GUAAA U CCUUU...UCA-3'@LB@ GGAGCGGUGUGA GCAA@LB@ |:|||::||||| ||||@LB@ CUUCGUUACACU CGUU@LB@3'-UUU...AUGAC ACAGC...GCG-5'@LB@ | |@LB@ 58 41@LB@@LB@@LB@Energy -10.98 kcal/mol@LB@Hybridization Energy -21.8951 kcal/mol@LB@Unfolding Energy - mRNA 7.70229 kcal/mol@LB@Unfolding Energy - sRNA 3.20882 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 42 -- 57@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 135 |
0.0153 |
0.379 |
b1245 |
oppC |
-10.91 |
0.134968 |
184 -- 214 |
42 -- 65 |
oligopeptide ABC transporter permease |
|
_____________183_____________________________215\n_____________|_______________________________|\n5'-GGU...GUUAC___________CUC______A__UUA_____GAAAA...UUA-3'\n______________UGAUACUGGAG___GCGAUG_UG___AGUAA\n______________|:||||||||:___||:|||_||___||:||\n______________AUUAUGACCUU___CGUUAC_AC___UCGUU\n3'-UUU...GAUUC_______________________________ACAGC...GCG-5'\n_____________|_______________________________|\n_____________66______________________________41\n |
188 -- 194 |
55 -- 61 |
-22.5581 kcal/mol |
8.34668 kcal/mol |
3.30456 kcal/mol |
183 215@LB@ | |@LB@5'-GGU...GUUAC CUC A UUA GAAAA...UUA-3'@LB@ UGAUACUGGAG GCGAUG UG AGUAA@LB@ |:||||||||: ||:||| || ||:||@LB@ AUUAUGACCUU CGUUAC AC UCGUU@LB@3'-UUU...GAUUC ACAGC...GCG-5'@LB@ | |@LB@ 66 41@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -22.5581 kcal/mol@LB@Unfolding Energy - mRNA 8.34668 kcal/mol@LB@Unfolding Energy - sRNA 3.30456 kcal/mol@LB@@LB@Position - mRNA 184 -- 214@LB@Position - sRNA 42 -- 65@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 163 |
0.02026 |
0.4072 |
b1283 |
osmB |
-10.88 |
0.136535 |
231 -- 259 |
38 -- 61 |
osmotically and stress inducible lipoprotein |
|
_____________230___________________________260\n_____________|_____________________________|\n5'-UAA...CCGCG____UUCU______UACUUU_________UCUGA...ACA-3'\n______________GCUG____GGCAAU______GGCAAUGUC\n______________:|||____:|||||______:||||||||\n______________UGAC____UCGUUA______UCGUUACAG\n3'-UUU...CAUUA____CU________CAC____________CACGA...GCG-5'\n_____________|_____________________________|\n_____________62____________________________37\n |
253 -- 259 |
38 -- 44 |
-21.4164 kcal/mol |
7.23917 kcal/mol |
3.30134 kcal/mol |
230 260@LB@ | |@LB@5'-UAA...CCGCG UUCU UACUUU UCUGA...ACA-3'@LB@ GCUG GGCAAU GGCAAUGUC@LB@ :||| :||||| :||||||||@LB@ UGAC UCGUUA UCGUUACAG@LB@3'-UUU...CAUUA CU CAC CACGA...GCG-5'@LB@ | |@LB@ 62 37@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -21.4164 kcal/mol@LB@Unfolding Energy - mRNA 7.23917 kcal/mol@LB@Unfolding Energy - sRNA 3.30134 kcal/mol@LB@@LB@Position - mRNA 231 -- 259@LB@Position - sRNA 38 -- 61@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 168 |
0.02071 |
0.4072 |
b2431 |
yfeX |
-10.86 |
0.137197 |
192 -- 213 |
24 -- 58 |
porphyrinogen oxidase cytoplasmic |
|
_____________191_________________________________214\n_____________|___________________________________|\n5'-AUU...UUUCA_____AA____________________________AGAGU...CCA-3'\n______________GGAGG_________CAAUGUC______UCAGGUUC\n______________|||:|_________|||||||______||||||||\n______________CCUUC_________GUUACAG______AGUCCAAG\n3'-UUU...UAUGA_____GUUACACUC_______CACGAA________AGGCG...GCG-5'\n_____________|___________________________________|\n_____________59__________________________________23\n |
207 -- 213 |
24 -- 30 |
-23.408 kcal/mol |
4.6321 kcal/mol |
7.91302 kcal/mol |
191 214@LB@ | |@LB@5'-AUU...UUUCA AA AGAGU...CCA-3'@LB@ GGAGG CAAUGUC UCAGGUUC@LB@ |||:| ||||||| ||||||||@LB@ CCUUC GUUACAG AGUCCAAG@LB@3'-UUU...UAUGA GUUACACUC CACGAA AGGCG...GCG-5'@LB@ | |@LB@ 59 23@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -23.408 kcal/mol@LB@Unfolding Energy - mRNA 4.6321 kcal/mol@LB@Unfolding Energy - sRNA 7.91302 kcal/mol@LB@@LB@Position - mRNA 192 -- 213@LB@Position - sRNA 24 -- 58@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 24 -- 30@LB@ |
