| 171 |
0.02102 |
0.4072 |
b1747 |
astA |
-10.86 |
0.137376 |
74 -- 103 |
34 -- 65 |
arginine succinyltransferase |
|
_____________73_______________________________104\n_____________|________________________________|\n5'-GGC...CGUGA________AUU_____________C__G____GUUUU...AAG-3'\n______________UGGUACUG___GCGG_GUG_GCAA_GU_GUGC\n______________|::|||||___||::_|||_||||_||_||||\n______________AUUAUGAC___CGUU_CAC_CGUU_CA_CACG\n3'-UUU...GAUUC________CUU____A___U____A__G____AAAGU...GCG-5'\n_____________|________________________________|\n_____________66_______________________________33\n |
75 -- 81 |
58 -- 64 |
-29.9398 kcal/mol |
12.3081 kcal/mol |
6.77229 kcal/mol |
73 104@LB@ | |@LB@5'-GGC...CGUGA AUU C G GUUUU...AAG-3'@LB@ UGGUACUG GCGG GUG GCAA GU GUGC@LB@ |::||||| ||:: ||| |||| || ||||@LB@ AUUAUGAC CGUU CAC CGUU CA CACG@LB@3'-UUU...GAUUC CUU A U A G AAAGU...GCG-5'@LB@ | |@LB@ 66 33@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -29.9398 kcal/mol@LB@Unfolding Energy - mRNA 12.3081 kcal/mol@LB@Unfolding Energy - sRNA 6.77229 kcal/mol@LB@@LB@Position - mRNA 74 -- 103@LB@Position - sRNA 34 -- 65@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 138 |
0.01576 |
0.3813 |
b3361 |
fic |
-10.85 |
0.137765 |
79 -- 110 |
27 -- 60 |
stationary phase-induced protein putative toxin |
|
_____________78__________________________________111\n_____________|___________________________________|\n5'-CGC...CGUCU________UUC_______UAA____AA________CCAGU...AAC-3'\n______________CUGGGAGC______AGCG___UCGU__UUUUCAGG\n______________||||:|||______|||:___||||__:|||||||\n______________GACCUUCG______UCGU___AGCA__GAAAGUCC\n3'-UUU...AUUAU________UUACAC____UAC____C_________AAGAG...GCG-5'\n_____________|___________________________________|\n_____________61__________________________________26\n |
104 -- 110 |
27 -- 33 |
-28.8548 kcal/mol |
10.0238 kcal/mol |
7.97931 kcal/mol |
78 111@LB@ | |@LB@5'-CGC...CGUCU UUC UAA AA CCAGU...AAC-3'@LB@ CUGGGAGC AGCG UCGU UUUUCAGG@LB@ ||||:||| |||: |||| :|||||||@LB@ GACCUUCG UCGU AGCA GAAAGUCC@LB@3'-UUU...AUUAU UUACAC UAC C AAGAG...GCG-5'@LB@ | |@LB@ 61 26@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -28.8548 kcal/mol@LB@Unfolding Energy - mRNA 10.0238 kcal/mol@LB@Unfolding Energy - sRNA 7.97931 kcal/mol@LB@@LB@Position - mRNA 79 -- 110@LB@Position - sRNA 27 -- 60@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 86 |
0.008505 |
0.3323 |
b0879 |
macB |
-10.85 |
0.137944 |
147 -- 181 |
15 -- 61 |
macrolide ABC transporter peremase/ATPase |
|
_____________146_____________________________________________182\n_____________|_______________________________________________|\n5'-AAU...AAAGG___U__________________AA____________GA__G______CCAAA...CGG-3'\n______________GCU_GAAGC_____GGGCGAUG__GU_______GGU__UU_GUGAGG\n______________:||_|||||_____|:||:|||__||_______|||__|:_|:||||\n______________UGA_CUUCG_____CUCGUUAC__CA_______CCA__AG_CGCUCC\n3'-UUU...CAUUA___C_____UUACA________AG__CGAAAGU___AG__G______CAGAA...GCG-5'\n_____________|_______________________________________________|\n_____________62______________________________________________14\n |
157 -- 163 |
40 -- 46 |
-34.4359 kcal/mol |
9.61218 kcal/mol |
13.9754 kcal/mol |
146 182@LB@ | |@LB@5'-AAU...AAAGG U AA GA G CCAAA...CGG-3'@LB@ GCU GAAGC GGGCGAUG GU GGU UU GUGAGG@LB@ :|| ||||| |:||:||| || ||| |: |:||||@LB@ UGA CUUCG CUCGUUAC CA CCA AG CGCUCC@LB@3'-UUU...CAUUA C UUACA AG CGAAAGU AG G CAGAA...GCG-5'@LB@ | |@LB@ 62 14@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -34.4359 kcal/mol@LB@Unfolding Energy - mRNA 9.61218 kcal/mol@LB@Unfolding Energy - sRNA 13.9754 kcal/mol@LB@@LB@Position - mRNA 147 -- 181@LB@Position - sRNA 15 -- 61@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 165 |
0.02037 |
0.4072 |
b1981 |
shiA |
-10.79 |
0.140980 |
142 -- 153 |
44 -- 55 |
shikimate transporter |
|
_____________141__________154\n_____________|____________|\n5'-CUG...UCGAC____________UACCU...UCG-3'\n______________GGCAAUGUGAGU\n______________:||||||||||:\n______________UCGUUACACUCG\n3'-UUU...GACCU____________UUACA...GCG-5'\n_____________|____________|\n_____________56___________43\n |
147 -- 153 |
44 -- 50 |
-18.9093 kcal/mol |
4.9192 kcal/mol |
3.20048 kcal/mol |
141 154@LB@ | |@LB@5'-CUG...UCGAC UACCU...UCG-3'@LB@ GGCAAUGUGAGU@LB@ :||||||||||:@LB@ UCGUUACACUCG@LB@3'-UUU...GACCU UUACA...GCG-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -18.9093 kcal/mol@LB@Unfolding Energy - mRNA 4.9192 kcal/mol@LB@Unfolding Energy - sRNA 3.20048 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 191 |
0.0243 |
0.4226 |
b4511 |
ybdZ |
-10.65 |
0.148355 |
2 -- 30 |
16 -- 45 |
stimulator of EntF adenylation activity MbtH-like |
|
_____________1_________________________________31\n_____________|_________________________________|\n__________5'-C_____________GGAAG_____A_________CCGAU...UAC-3'\n______________GCA___UUGUGCU_____CGGGU__UUCGCGAG\n______________|||___|:|||||_____|:|||__|:||||||\n______________CGU___AGCACGA_____GUCCA__AGGCGCUC\n3'-UUU...ACACU___UAC_______AA________AG________CCAGA...GCG-5'\n_____________|_________________________________|\n_____________46________________________________15\n |
24 -- 30 |
16 -- 22 |
-30.8687 kcal/mol |
10.0459 kcal/mol |
10.1709 kcal/mol |
1 31@LB@ | |@LB@ 5'-C GGAAG A CCGAU...UAC-3'@LB@ GCA UUGUGCU CGGGU UUCGCGAG@LB@ ||| |:||||| |:||| |:||||||@LB@ CGU AGCACGA GUCCA AGGCGCUC@LB@3'-UUU...ACACU UAC AA AG CCAGA...GCG-5'@LB@ | |@LB@ 46 15@LB@@LB@@LB@Energy -10.65 kcal/mol@LB@Hybridization Energy -30.8687 kcal/mol@LB@Unfolding Energy - mRNA 10.0459 kcal/mol@LB@Unfolding Energy - sRNA 10.1709 kcal/mol@LB@@LB@Position - mRNA 2 -- 30@LB@Position - sRNA 16 -- 45@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 16 -- 22@LB@ |
| 197 |
0.02501 |
0.4226 |
b2947 |
gshB |
-10.62 |
0.150229 |
274 -- 293 |
36 -- 62 |
glutathione synthetase |
|
_____________273_________________________294\n_____________|___________________________|\n5'-UGC...UAUGU_____________________C_____GGUUACG-3'\n______________UGCUGGAAGCA_______CAG_GUCGU\n______________|:|||||||||_______||:_|||||\n______________AUGACCUUCGU_______GUU_CAGCA\n3'-UUU...UCAUU___________UACACUC___A_____CGAAA...GCG-5'\n_____________|___________________________|\n_____________63__________________________35\n |
278 -- 284 |
52 -- 58 |
-23.3786 kcal/mol |
9.45801 kcal/mol |
3.30265 kcal/mol |
273 294@LB@ | |@LB@5'-UGC...UAUGU C GGUUACG-3'@LB@ UGCUGGAAGCA CAG GUCGU@LB@ |:||||||||| ||: |||||@LB@ AUGACCUUCGU GUU CAGCA@LB@3'-UUU...UCAUU UACACUC A CGAAA...GCG-5'@LB@ | |@LB@ 63 35@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -23.3786 kcal/mol@LB@Unfolding Energy - mRNA 9.45801 kcal/mol@LB@Unfolding Energy - sRNA 3.30265 kcal/mol@LB@@LB@Position - mRNA 274 -- 293@LB@Position - sRNA 36 -- 62@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 149 |
0.01819 |
0.4072 |
b2708 |
srlQ |
-10.57 |
0.153166 |
157 -- 203 |
40 -- 61 |
D-arabinose 5-phosphate isomerase |
|
_____________156_____________________________________________204\n_____________|_______________________________________________|\n5'-UAC...CAGGC________AGAAAGGGAU______GAUCAUAACCGGAGA________AGUGA...GCG-3'\n______________GCUGGAAG__________CGAUGU_______________GAGCAAUG\n______________:|||||||__________|:||||_______________||||||||\n______________UGACCUUC__________GUUACA_______________CUCGUUAC\n3'-UUU...CAUUA_______________________________________________AGCAC...GCG-5'\n_____________|_______________________________________________|\n_____________62______________________________________________39\n |
197 -- 203 |
40 -- 46 |
-23.3244 kcal/mol |
9.45822 kcal/mol |
3.30075 kcal/mol |
156 204@LB@ | |@LB@5'-UAC...CAGGC AGAAAGGGAU GAUCAUAACCGGAGA AGUGA...GCG-3'@LB@ GCUGGAAG CGAUGU GAGCAAUG@LB@ :||||||| |:|||| ||||||||@LB@ UGACCUUC GUUACA CUCGUUAC@LB@3'-UUU...CAUUA AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -10.57 kcal/mol@LB@Hybridization Energy -23.3244 kcal/mol@LB@Unfolding Energy - mRNA 9.45822 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 177 |
0.02193 |
0.4113 |
b4136 |
dsbD |
-10.49 |
0.157561 |
37 -- 60 |
42 -- 62 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________36_______________________61\n_____________|________________________|\n5'-UGC...UCUAU_______AA_____GCUG______GAAUA...CGG-3'\n______________UACUGGG__GGUAA____GAGCAA\n______________||||||:__:|:||____||||||\n______________AUGACCU__UCGUU____CUCGUU\n3'-UUU...UCAUU______________ACA_______ACAGC...GCG-5'\n_____________|________________________|\n_____________63_______________________41\n |
37 -- 43 |
56 -- 62 |
-20.3754 kcal/mol |
6.58529 kcal/mol |
3.30151 kcal/mol |
36 61@LB@ | |@LB@5'-UGC...UCUAU AA GCUG GAAUA...CGG-3'@LB@ UACUGGG GGUAA GAGCAA@LB@ ||||||: :|:|| ||||||@LB@ AUGACCU UCGUU CUCGUU@LB@3'-UUU...UCAUU ACA ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -20.3754 kcal/mol@LB@Unfolding Energy - mRNA 6.58529 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 37 -- 60@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 130 |
0.01403 |
0.3627 |
b3531 |
bcsZ |
-10.44 |
0.160598 |
268 -- 291 |
50 -- 82 |
endo-1 4-D-glucanase |
|
_____________267_______________________________292\n_____________|_________________________________|\n5'-UCA...AGCCU_________CU______________________UUAAA...AGG-3'\n______________GUACCUGGC__GC_________CUGGGAGCAGU\n______________|:|||:|||__||_________||||:||||:|\n______________CGUGGGCCG__CG_________GACCUUCGUUA\n___3'-UUUUCGGU_________AC__AUUCAUUAU___________CACUC...GCG-5'\n_____________|_________________________________|\n_____________83________________________________49\n |
283 -- 289 |
52 -- 58 |
-33.5305 kcal/mol |
8.70748 kcal/mol |
14.3864 kcal/mol |
267 292@LB@ | |@LB@5'-UCA...AGCCU CU UUAAA...AGG-3'@LB@ GUACCUGGC GC CUGGGAGCAGU@LB@ |:|||:||| || ||||:||||:|@LB@ CGUGGGCCG CG GACCUUCGUUA@LB@ 3'-UUUUCGGU AC AUUCAUUAU CACUC...GCG-5'@LB@ | |@LB@ 83 49@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -33.5305 kcal/mol@LB@Unfolding Energy - mRNA 8.70748 kcal/mol@LB@Unfolding Energy - sRNA 14.3864 kcal/mol@LB@@LB@Position - mRNA 268 -- 291@LB@Position - sRNA 50 -- 82@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 76 |
0.007246 |
0.3134 |
b4174 |
hflK |
-10.43 |
0.160892 |
249 -- 292 |
51 -- 90 |
modulator for HflB protease specific for phage lambda cII repressor |
|
_____________248_____________________________________________293\n_____________|_______________________________________________|\n5'-AGA...CGUGG__________AA___________AACUC____GGAAA______A___AGGCGGUC-3'\n______________GGAAG_CAGC__ACCUGGC_GGC_____UGAG______UGGAA_CAA\n______________::|||_||||__|||:|||_|||_____|:||______|||||_|||\n______________UUUUC_GUCG__UGGGCCG_CCG_____AUUC______ACCUU_GUU\n___________3'-_____G_____________A____________AUUAUG_____C___ACACU...GCG-5'\n______________|______________________________________________|\n______________90_____________________________________________50\n |
260 -- 266 |
74 -- 80 |
-34.0568 kcal/mol |
9.12339 kcal/mol |
14.5017 kcal/mol |
248 293@LB@ | |@LB@5'-AGA...CGUGG AA AACUC GGAAA A AGGCGGUC-3'@LB@ GGAAG CAGC ACCUGGC GGC UGAG UGGAA CAA@LB@ ::||| |||| |||:||| ||| |:|| ||||| |||@LB@ UUUUC GUCG UGGGCCG CCG AUUC ACCUU GUU@LB@ 3'- G A AUUAUG C ACACU...GCG-5'@LB@ | |@LB@ 90 50@LB@@LB@@LB@Energy -10.43 kcal/mol@LB@Hybridization Energy -34.0568 kcal/mol@LB@Unfolding Energy - mRNA 9.12339 kcal/mol@LB@Unfolding Energy - sRNA 14.5017 kcal/mol@LB@@LB@Position - mRNA 249 -- 292@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 74 -- 80@LB@ |
