| 63 |
0.005616 |
0.2905 |
b3261 |
fis |
-12.93 |
0.062484 |
136 -- 161 |
37 -- 61 |
global DNA-binding transcriptional dual regulator |
|
_____________135________________________162\n_____________|__________________________|\n5'-GGA...GAACA__________U__GA____UACU___AAAAU...AGG-3'\n______________GCUGGAGGCG_UG__GGCA____UCG\n______________:|||||:||:_||__:|||____|||\n______________UGACCUUCGU_AC__UCGU____AGC\n3'-UUU...CAUUA__________U__AC____UAC____ACGAA...GCG-5'\n_____________|__________________________|\n_____________62_________________________36\n |
139 -- 145 |
52 -- 58 |
-26.9705 kcal/mol |
10.742 kcal/mol |
3.30158 kcal/mol |
135 162@LB@ | |@LB@5'-GGA...GAACA U GA UACU AAAAU...AGG-3'@LB@ GCUGGAGGCG UG GGCA UCG@LB@ :|||||:||: || :||| |||@LB@ UGACCUUCGU AC UCGU AGC@LB@3'-UUU...CAUUA U AC UAC ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -26.9705 kcal/mol@LB@Unfolding Energy - mRNA 10.742 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 136 -- 161@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 33 |
0.003005 |
0.2776 |
b0698 |
kdpA |
-12.81 |
0.065301 |
205 -- 229 |
1 -- 24 |
potassium translocating ATPase subunit A |
|
_____________204_______________________230\n_____________|_________________________|\n5'-GCU...GAUGG__G___A____U___UA________CACGU...ACA-3'\n______________CU_CGC_AGGG_UCU__CUGAUCGC\n______________||_|||_||||_|||__||||||||\n______________GA_GCG_UCCC_AGA__GACUAGCG\n3'-UUU...UCCAA__G___C________AG________-5'\n_____________|________________________|\n_____________25_______________________1\n |
223 -- 229 |
1 -- 7 |
-32.8008 kcal/mol |
12.2882 kcal/mol |
7.69932 kcal/mol |
204 230@LB@ | |@LB@5'-GCU...GAUGG G A U UA CACGU...ACA-3'@LB@ CU CGC AGGG UCU CUGAUCGC@LB@ || ||| |||| ||| ||||||||@LB@ GA GCG UCCC AGA GACUAGCG@LB@3'-UUU...UCCAA G C AG -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -12.81 kcal/mol@LB@Hybridization Energy -32.8008 kcal/mol@LB@Unfolding Energy - mRNA 12.2882 kcal/mol@LB@Unfolding Energy - sRNA 7.69932 kcal/mol@LB@@LB@Position - mRNA 205 -- 229@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 34 |
0.003032 |
0.2776 |
b3928 |
zapB |
-12.77 |
0.066459 |
230 -- 240 |
51 -- 61 |
FtsZ stabilizer septal ring assembly factor cell division stimulator |
|
_____________229_________241\n_____________|___________|\n5'-UUU...GAGAA___________AAGUA...AAG-3'\n______________ACUGGAAGCAA\n______________|||||||||||\n______________UGACCUUCGUU\n3'-UUU...CAUUA___________ACACU...GCG-5'\n_____________|___________|\n_____________62__________50\n |
234 -- 240 |
51 -- 57 |
-17.959 kcal/mol |
2.30162 kcal/mol |
2.8896 kcal/mol |
229 241@LB@ | |@LB@5'-UUU...GAGAA AAGUA...AAG-3'@LB@ ACUGGAAGCAA@LB@ |||||||||||@LB@ UGACCUUCGUU@LB@3'-UUU...CAUUA ACACU...GCG-5'@LB@ | |@LB@ 62 50@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -17.959 kcal/mol@LB@Unfolding Energy - mRNA 2.30162 kcal/mol@LB@Unfolding Energy - sRNA 2.8896 kcal/mol@LB@@LB@Position - mRNA 230 -- 240@LB@Position - sRNA 51 -- 61@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 57 |
0.005292 |
0.2905 |
b0077 |
ilvI |
-12.73 |
0.067491 |
188 -- 240 |
1 -- 67 |
acetolactate synthase 3 large subunit |
|
_____________187__________________________________________________________________241\n_____________|____________________________________________________________________|\n5'-AAA...CAAAC___________C____C_________________________AG_____A__U____G__________UUAUC...UUU-3'\n______________AGUGA____GG_AGGC_AUG_GAG__AUGUUGU_CU____GG____CCG_GA_GGUC_UCC_GAUCGC\n______________|||:|____||_|:||_|||_|||__||||:||_||____||____|||_||_||||_|||_||||||\n______________UCAUU____CC_UUCG_UAC_CUC__UACAGCA_GA____CC____GGC_CU_CCAG_AGG_CUAGCG\n3'-UUU...CCGAU_____AUGA_______U___A___GU_______C__AAGU__AAGA___G__C____A___A______-5'\n_____________|___________________________________________________________________|\n_____________68__________________________________________________________________1\n |
207 -- 213 |
36 -- 42 |
-47.8903 kcal/mol |
21.0378 kcal/mol |
14.1245 kcal/mol |
187 241@LB@ | |@LB@5'-AAA...CAAAC C C AG A U G UUAUC...UUU-3'@LB@ AGUGA GG AGGC AUG GAG AUGUUGU CU GG CCG GA GGUC UCC GAUCGC@LB@ |||:| || |:|| ||| ||| ||||:|| || || ||| || |||| ||| ||||||@LB@ UCAUU CC UUCG UAC CUC UACAGCA GA CC GGC CU CCAG AGG CUAGCG@LB@3'-UUU...CCGAU AUGA U A GU C AAGU AAGA G C A A -5'@LB@ | |@LB@ 68 1@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -47.8903 kcal/mol@LB@Unfolding Energy - mRNA 21.0378 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 188 -- 240@LB@Position - sRNA 1 -- 67@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 170 |
0.02096 |
0.4072 |
b2283 |
nuoG |
-12.68 |
0.068788 |
186 -- 195 |
52 -- 61 |
NADH:ubiquinone oxidoreductase chain G |
|
_____________185________196\n_____________|__________|\n5'-CUG...AGAAA__________UGCUA...UUU-3'\n______________ACUGGAAGCA\n______________||||||||||\n______________UGACCUUCGU\n3'-UUU...CAUUA__________UACAC...GCG-5'\n_____________|__________|\n_____________62_________51\n |
189 -- 195 |
52 -- 58 |
-16.7738 kcal/mol |
1.20687 kcal/mol |
2.88813 kcal/mol |
185 196@LB@ | |@LB@5'-CUG...AGAAA UGCUA...UUU-3'@LB@ ACUGGAAGCA@LB@ ||||||||||@LB@ UGACCUUCGU@LB@3'-UUU...CAUUA UACAC...GCG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -12.68 kcal/mol@LB@Hybridization Energy -16.7738 kcal/mol@LB@Unfolding Energy - mRNA 1.20687 kcal/mol@LB@Unfolding Energy - sRNA 2.88813 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 188 |
0.02302 |
0.4113 |
b3105 |
yhaJ |
-12.66 |
0.069284 |
224 -- 245 |
40 -- 61 |
LysR family putative transcriptional regulator |
|
_____________223____________________246\n_____________|______________________|\n5'-CGG...UUAAC__________CUAC____U___GAUGC...GCG-3'\n______________GCUGGAAGCA____GGGU_AUG\n______________:|||||||||____|:|:_|||\n______________UGACCUUCGU____CUCG_UAC\n3'-UUU...CAUUA__________UACA____U___AGCAC...GCG-5'\n_____________|______________________|\n_____________62_____________________39\n |
227 -- 233 |
52 -- 58 |
-21.8067 kcal/mol |
5.84576 kcal/mol |
3.30075 kcal/mol |
223 246@LB@ | |@LB@5'-CGG...UUAAC CUAC U GAUGC...GCG-3'@LB@ GCUGGAAGCA GGGU AUG@LB@ :||||||||| |:|: |||@LB@ UGACCUUCGU CUCG UAC@LB@3'-UUU...CAUUA UACA U AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -12.66 kcal/mol@LB@Hybridization Energy -21.8067 kcal/mol@LB@Unfolding Energy - mRNA 5.84576 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 224 -- 245@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 162 |
0.02022 |
0.4072 |
b3354 |
yheU |
-12.65 |
0.069641 |
153 -- 196 |
51 -- 89 |
UPF0270 family protein |
|
_____________152__________________________________________197\n_____________|____________________________________________|\n5'-CUG...UGGCU_______C___UU____A________CAAC___U__________AAUCA...GUA-3'\n______________GGAGUCA_GCA__CCUG_CUGGUUAA____GUA_CUGGAGGCGA\n______________::||:||_|||__||:|_||||:|||____:||_|||||:||:|\n______________UUUCGGU_CGU__GGGC_GACCGAUU____UAU_GACCUUCGUU\n__________3'-U_________________C________CAU_______________ACACU...GCG-5'\n_____________|____________________________________________|\n_____________90___________________________________________50\n |
189 -- 195 |
52 -- 58 |
-41.3188 kcal/mol |
14.1702 kcal/mol |
14.5017 kcal/mol |
152 197@LB@ | |@LB@5'-CUG...UGGCU C UU A CAAC U AAUCA...GUA-3'@LB@ GGAGUCA GCA CCUG CUGGUUAA GUA CUGGAGGCGA@LB@ ::||:|| ||| ||:| ||||:||| :|| |||||:||:|@LB@ UUUCGGU CGU GGGC GACCGAUU UAU GACCUUCGUU@LB@ 3'-U C CAU ACACU...GCG-5'@LB@ | |@LB@ 90 50@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -41.3188 kcal/mol@LB@Unfolding Energy - mRNA 14.1702 kcal/mol@LB@Unfolding Energy - sRNA 14.5017 kcal/mol@LB@@LB@Position - mRNA 153 -- 196@LB@Position - sRNA 51 -- 89@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 181 |
0.0223 |
0.4113 |
b3770 |
ilvE |
-12.64 |
0.069830 |
250 -- 281 |
37 -- 61 |
branched-chain amino acid aminotransferase |
|
_____________249______________________________282\n_____________|________________________________|\n5'-UUU...GGUUC_______AGAC____AG___CAU_________CACGC...GCA-3'\n______________GCUGGGA____GCGA__GUG___GUGAUGUCG\n______________:||||:|____||:|__|||___|::||||||\n______________UGACCUU____CGUU__CAC___CGUUACAGC\n3'-UUU...CAUUA_______________A____U___________ACGAA...GCG-5'\n_____________|________________________________|\n_____________62_______________________________36\n |
275 -- 281 |
37 -- 43 |
-25.0056 kcal/mol |
9.06403 kcal/mol |
3.30158 kcal/mol |
249 282@LB@ | |@LB@5'-UUU...GGUUC AGAC AG CAU CACGC...GCA-3'@LB@ GCUGGGA GCGA GUG GUGAUGUCG@LB@ :||||:| ||:| ||| |::||||||@LB@ UGACCUU CGUU CAC CGUUACAGC@LB@3'-UUU...CAUUA A U ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -12.64 kcal/mol@LB@Hybridization Energy -25.0056 kcal/mol@LB@Unfolding Energy - mRNA 9.06403 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 250 -- 281@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 77 |
0.00734 |
0.3134 |
b1793 |
yoaF |
-12.59 |
0.071143 |
233 -- 250 |
68 -- 86 |
DUF333 family outer membrane lipoprotein |
|
_____________232_________________251\n_____________|___________________|\n5'-GAU...UGCUU___________________UUCAA...UGG-3'\n______________GCUGGU_CCUGGCUGGUUG\n______________||::|:_||:||||||:|:\n______________CGGUCG_GGGCCGACCGAU\n_______3'-UUUU______U____________UCAUU...GCG-5'\n_____________|___________________|\n_____________87__________________67\n |
243 -- 249 |
69 -- 75 |
-29.581 kcal/mol |
5.32768 kcal/mol |
11.6617 kcal/mol |
232 251@LB@ | |@LB@5'-GAU...UGCUU UUCAA...UGG-3'@LB@ GCUGGU CCUGGCUGGUUG@LB@ ||::|: ||:||||||:|:@LB@ CGGUCG GGGCCGACCGAU@LB@ 3'-UUUU U UCAUU...GCG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -29.581 kcal/mol@LB@Unfolding Energy - mRNA 5.32768 kcal/mol@LB@Unfolding Energy - sRNA 11.6617 kcal/mol@LB@@LB@Position - mRNA 233 -- 250@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 161 |
0.02011 |
0.4072 |
b2820 |
recB |
-12.55 |
0.072418 |
202 -- 213 |
37 -- 48 |
exonuclease V (RecBCD complex) beta subunit |
|
_____________201__________214\n_____________|____________|\n5'-GGC...AAGAA____________CCGAG...UUG-3'\n______________UGAGUGAUGUCG\n______________||||::||||||\n______________ACUCGUUACAGC\n3'-UUU...GUUAC____________ACGAA...GCG-5'\n_____________|____________|\n_____________49___________36\n |
207 -- 213 |
37 -- 43 |
-16.4196 kcal/mol |
2.71715 kcal/mol |
1.1567 kcal/mol |
201 214@LB@ | |@LB@5'-GGC...AAGAA CCGAG...UUG-3'@LB@ UGAGUGAUGUCG@LB@ ||||::||||||@LB@ ACUCGUUACAGC@LB@3'-UUU...GUUAC ACGAA...GCG-5'@LB@ | |@LB@ 49 36@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -16.4196 kcal/mol@LB@Unfolding Energy - mRNA 2.71715 kcal/mol@LB@Unfolding Energy - sRNA 1.1567 kcal/mol@LB@@LB@Position - mRNA 202 -- 213@LB@Position - sRNA 37 -- 48@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 37 -- 43@LB@ |
