| 56 |
0.005166 |
0.2905 |
b0152 |
fhuD |
-11.53 |
0.106927 |
159 -- 195 |
38 -- 86 |
iron(3+)-hydroxamate import ABC transporter periplasmic binding protein |
|
_____________158________________________________________________196\n_____________|__________________________________________________|\n5'-ACG...AUUUU_____________G___GCU_______________CC_______UU____UAUUG...UUG-3'\n______________GCC_GCAUCCGGC_GGU_______________GCA__UGUGAGU__UGUU\n______________|||_|||:|||||_||:_______________|||__||||||:__|||:\n______________CGG_CGUGGGCCG_CCG_______________CGU__ACACUCG__ACAG\n_______3'-UUUU___U_________A___AUUCAUUAUGACCUU___U________UU____CACGA...GCG-5'\n_____________|__________________________________________________|\n_____________87_________________________________________________37\n |
183 -- 189 |
44 -- 50 |
-42.47 kcal/mol |
16.0325 kcal/mol |
14.9106 kcal/mol |
158 196@LB@ | |@LB@5'-ACG...AUUUU G GCU CC UU UAUUG...UUG-3'@LB@ GCC GCAUCCGGC GGU GCA UGUGAGU UGUU@LB@ ||| |||:||||| ||: ||| ||||||: |||:@LB@ CGG CGUGGGCCG CCG CGU ACACUCG ACAG@LB@ 3'-UUUU U A AUUCAUUAUGACCUU U UU CACGA...GCG-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -42.47 kcal/mol@LB@Unfolding Energy - mRNA 16.0325 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 159 -- 195@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 67 |
0.005865 |
0.2905 |
b4138 |
dcuA |
-11.52 |
0.107256 |
35 -- 44 |
73 -- 82 |
C4-dicarboxylate antiporter |
|
_____________34_________45\n_____________|__________|\n5'-AAC...CUGAU__________UACAA...UGG-3'\n______________GCACCCGGCU\n______________||||||||||\n______________CGUGGGCCGA\n___3'-UUUUCGGU__________CCGAU...GCG-5'\n_____________|__________|\n_____________83_________72\n |
38 -- 44 |
73 -- 79 |
-22.0144 kcal/mol |
2.69052 kcal/mol |
7.80512 kcal/mol |
34 45@LB@ | |@LB@5'-AAC...CUGAU UACAA...UGG-3'@LB@ GCACCCGGCU@LB@ ||||||||||@LB@ CGUGGGCCGA@LB@ 3'-UUUUCGGU CCGAU...GCG-5'@LB@ | |@LB@ 83 72@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -22.0144 kcal/mol@LB@Unfolding Energy - mRNA 2.69052 kcal/mol@LB@Unfolding Energy - sRNA 7.80512 kcal/mol@LB@@LB@Position - mRNA 35 -- 44@LB@Position - sRNA 73 -- 82@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 45 |
0.00394 |
0.2905 |
b4551 |
yheV |
-11.41 |
0.111890 |
172 -- 193 |
40 -- 61 |
DUF2387 family putative metal-binding protein |
|
_____________171____________________194\n_____________|______________________|\n5'-AUC...GGACG_______UG___U_______A_GGUAA...UUG-3'\n______________GCUGGGA__AAU_UGAGUAG_G\n______________:||||:|__|||_||||:|:_|\n______________UGACCUU__UUA_ACUCGUU_C\n3'-UUU...CAUUA_______CG___C_______A_AGCAC...GCG-5'\n_____________|______________________|\n_____________62_____________________39\n |
185 -- 191 |
42 -- 48 |
-20.0831 kcal/mol |
5.37544 kcal/mol |
3.30075 kcal/mol |
171 194@LB@ | |@LB@5'-AUC...GGACG UG U A GGUAA...UUG-3'@LB@ GCUGGGA AAU UGAGUAG G@LB@ :||||:| ||| ||||:|: |@LB@ UGACCUU UUA ACUCGUU C@LB@3'-UUU...CAUUA CG C A AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -20.0831 kcal/mol@LB@Unfolding Energy - mRNA 5.37544 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 172 -- 193@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 22 |
0.001794 |
0.2682 |
b1992 |
cobS |
-11.39 |
0.112398 |
162 -- 208 |
42 -- 83 |
cobalamin synthase |
|
_____________161________________________________________________209\n_____________|__________________________________________________|\n5'-GAG...AAUGA______________GGUUUCG______________AAAUCAAA_______AUUAU...GUA-3'\n______________AGUAU__GGCUGGU_______GGUAUUGG_AGUAA________UGAGUAA\n______________||:|:__||||||:_______::||:|||_||:||________||||:||\n______________UCGUG__CCGACCG_______UUAUGACC_UCGUU________ACUCGUU\n____3'-UUUUCGG_____GG_______AUUCA__________U_____AC_____________ACAGC...GCG-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________41\n |
202 -- 208 |
42 -- 48 |
-33.2748 kcal/mol |
6.99193 kcal/mol |
14.8879 kcal/mol |
161 209@LB@ | |@LB@5'-GAG...AAUGA GGUUUCG AAAUCAAA AUUAU...GUA-3'@LB@ AGUAU GGCUGGU GGUAUUGG AGUAA UGAGUAA@LB@ ||:|: ||||||: ::||:||| ||:|| ||||:||@LB@ UCGUG CCGACCG UUAUGACC UCGUU ACUCGUU@LB@ 3'-UUUUCGG GG AUUCA U AC ACAGC...GCG-5'@LB@ | |@LB@ 84 41@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -33.2748 kcal/mol@LB@Unfolding Energy - mRNA 6.99193 kcal/mol@LB@Unfolding Energy - sRNA 14.8879 kcal/mol@LB@@LB@Position - mRNA 162 -- 208@LB@Position - sRNA 42 -- 83@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 187 |
0.023 |
0.4113 |
b2311 |
ubiX |
-11.39 |
0.112499 |
264 -- 277 |
17 -- 30 |
3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
|
_____________263____________278\n_____________|______________|\n5'-UGA...UAUUA________G_____UGUCA...AUC-3'\n______________CAGGUUCU_CGCGA\n______________||||||||_|||||\n______________GUCCAAGA_GCGCU\n3'-UUU...CGAAA________G_____CCCAG...GCG-5'\n_____________|______________|\n_____________31_____________16\n |
265 -- 271 |
23 -- 29 |
-23.8621 kcal/mol |
5.17919 kcal/mol |
7.29042 kcal/mol |
263 278@LB@ | |@LB@5'-UGA...UAUUA G UGUCA...AUC-3'@LB@ CAGGUUCU CGCGA@LB@ |||||||| |||||@LB@ GUCCAAGA GCGCU@LB@3'-UUU...CGAAA G CCCAG...GCG-5'@LB@ | |@LB@ 31 16@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -23.8621 kcal/mol@LB@Unfolding Energy - mRNA 5.17919 kcal/mol@LB@Unfolding Energy - sRNA 7.29042 kcal/mol@LB@@LB@Position - mRNA 264 -- 277@LB@Position - sRNA 17 -- 30@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 156 |
0.0192 |
0.4072 |
b0472 |
recR |
-11.39 |
0.112512 |
68 -- 82 |
54 -- 68 |
gap repair protein |
|
_____________67______________83\n_____________|_______________|\n5'-GUG...CGACA___A___________ACCUG...UUC-3'\n______________AAG_GAUGCUGGAAG\n______________|||_:||:|||||||\n______________UUC_UUAUGACCUUC\n3'-UUU...ACCGA___A___________GUUAC...GCG-5'\n_____________|_______________|\n_____________69______________53\n |
76 -- 82 |
54 -- 60 |
-16.6291 kcal/mol |
2.52602 kcal/mol |
2.71091 kcal/mol |
67 83@LB@ | |@LB@5'-GUG...CGACA A ACCUG...UUC-3'@LB@ AAG GAUGCUGGAAG@LB@ ||| :||:|||||||@LB@ UUC UUAUGACCUUC@LB@3'-UUU...ACCGA A GUUAC...GCG-5'@LB@ | |@LB@ 69 53@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -16.6291 kcal/mol@LB@Unfolding Energy - mRNA 2.52602 kcal/mol@LB@Unfolding Energy - sRNA 2.71091 kcal/mol@LB@@LB@Position - mRNA 68 -- 82@LB@Position - sRNA 54 -- 68@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 174 |
0.02116 |
0.4072 |
b3081 |
fadH |
-11.31 |
0.116093 |
186 -- 215 |
37 -- 63 |
2 4-dienoyl-CoA reductase NADH and FMN-linked |
|
_____________185______________________________216\n_____________|________________________________|\n5'-UGG...UUUAC______________UUUA_____UACCC____CUGUU...ACC-3'\n______________AUACUGGA__CAAU____UGAGC_____GUCG\n______________||||||||__||||____|||||_____||||\n______________UAUGACCU__GUUA____ACUCG_____CAGC\n3'-UUU...UUCAU________UC____C________UUA______ACGAA...GCG-5'\n_____________|________________________________|\n_____________64_______________________________36\n |
187 -- 193 |
56 -- 62 |
-21.1868 kcal/mol |
6.57497 kcal/mol |
3.30267 kcal/mol |
185 216@LB@ | |@LB@5'-UGG...UUUAC UUUA UACCC CUGUU...ACC-3'@LB@ AUACUGGA CAAU UGAGC GUCG@LB@ |||||||| |||| ||||| ||||@LB@ UAUGACCU GUUA ACUCG CAGC@LB@3'-UUU...UUCAU UC C UUA ACGAA...GCG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -21.1868 kcal/mol@LB@Unfolding Energy - mRNA 6.57497 kcal/mol@LB@Unfolding Energy - sRNA 3.30267 kcal/mol@LB@@LB@Position - mRNA 186 -- 215@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 100 |
0.01027 |
0.3393 |
b0661 |
miaB |
-11.26 |
0.118120 |
162 -- 200 |
37 -- 86 |
tRNA-i(6)A37 methylthiotransferase |
|
_____________161_________________________________________________201\n_____________|___________________________________________________|\n5'-CGC...UAUGC___CU_______________C________UC____________________AUGAC...AAC-3'\n______________GCC__GCAUUC__CUGGCUA_____UAUU____GCAA___GAGCAA_GUCG\n______________|||__|||::|__|||||||_____||:|____||||___||||||_||||\n______________CGG__CGUGGG__GACCGAU_____AUGA____CGUU___CUCGUU_CAGC\n_______3'-UUUU___U_______CC_______UCAUU____CCUU____ACA______A____ACGAA...GCG-5'\n_____________|___________________________________________________|\n_____________87__________________________________________________36\n |
173 -- 179 |
68 -- 74 |
-35.2592 kcal/mol |
9.08526 kcal/mol |
14.9108 kcal/mol |
161 201@LB@ | |@LB@5'-CGC...UAUGC CU C UC AUGAC...AAC-3'@LB@ GCC GCAUUC CUGGCUA UAUU GCAA GAGCAA GUCG@LB@ ||| |||::| ||||||| ||:| |||| |||||| ||||@LB@ CGG CGUGGG GACCGAU AUGA CGUU CUCGUU CAGC@LB@ 3'-UUUU U CC UCAUU CCUU ACA A ACGAA...GCG-5'@LB@ | |@LB@ 87 36@LB@@LB@@LB@Energy -11.26 kcal/mol@LB@Hybridization Energy -35.2592 kcal/mol@LB@Unfolding Energy - mRNA 9.08526 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 162 -- 200@LB@Position - sRNA 37 -- 86@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 179 |
0.02212 |
0.4113 |
b3317 |
rplB |
-11.24 |
0.118994 |
191 -- 218 |
39 -- 68 |
50S ribosomal subunit protein L2 |
|
_____________190____________________________219\n_____________|______________________________|\n5'-GCA...CGGAG_________AAU__________UUA_____AAACC...UGC-3'\n______________GAGUAAUAC____GGCAGU_UG___AAUGU\n______________:||||||||____:|||:|_||___|||||\n______________UUCAUUAUG____UCGUUA_AC___UUACA\n3'-UUU...ACCGA_________ACCU______C__UCG_____GCACG...GCG-5'\n_____________|______________________________|\n_____________69_____________________________38\n |
193 -- 199 |
60 -- 66 |
-19.7264 kcal/mol |
5.17772 kcal/mol |
3.30515 kcal/mol |
190 219@LB@ | |@LB@5'-GCA...CGGAG AAU UUA AAACC...UGC-3'@LB@ GAGUAAUAC GGCAGU UG AAUGU@LB@ :|||||||| :|||:| || |||||@LB@ UUCAUUAUG UCGUUA AC UUACA@LB@3'-UUU...ACCGA ACCU C UCG GCACG...GCG-5'@LB@ | |@LB@ 69 38@LB@@LB@@LB@Energy -11.24 kcal/mol@LB@Hybridization Energy -19.7264 kcal/mol@LB@Unfolding Energy - mRNA 5.17772 kcal/mol@LB@Unfolding Energy - sRNA 3.30515 kcal/mol@LB@@LB@Position - mRNA 191 -- 218@LB@Position - sRNA 39 -- 68@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 143 |
0.01687 |
0.3964 |
b3103 |
yhaH |
-11.09 |
0.125996 |
208 -- 287 |
3 -- 67 |
DUF805 family inner membrane protein |
|
_____________207_________________________________________________________________________________288\n_____________|___________________________________________________________________________________|\n5'-AUU...GGACU____U_____A_____CUAAAAAAUU___________C____G__G_G_____CGCAAAGAGUACU__AU____A________AACAU...UUA-3'\n______________GGUA___CUG_AAGUA__________AUGUCG_GUUU_CGGG_UC_U_CGCGG_____________GG__GUUU_UUCUGGUC\n______________:|||___|||_|||:|__________||||||_|:||_|:||_||_|_||||:_____________||__||:|_|:|||:||\n______________UCAU___GAC_UUCGU__________UACAGC_CGAA_GUCC_AG_A_GCGCU_____________CC__CAGA_AGGACUAG\n3'-UUU...CCGAU____UAU___C_____UACACUCGU_______A____A____A____G___________________________________CG-5'\n_____________|___________________________________________________________________________________|\n_____________68__________________________________________________________________________________2\n |
281 -- 287 |
3 -- 9 |
-42.8726 kcal/mol |
17.657 kcal/mol |
14.1245 kcal/mol |
207 288@LB@ | |@LB@5'-AUU...GGACU U A CUAAAAAAUU C G G G CGCAAAGAGUACU AU A AACAU...UUA-3'@LB@ GGUA CUG AAGUA AUGUCG GUUU CGGG UC U CGCGG GG GUUU UUCUGGUC@LB@ :||| ||| |||:| |||||| |:|| |:|| || | ||||: || ||:| |:|||:||@LB@ UCAU GAC UUCGU UACAGC CGAA GUCC AG A GCGCU CC CAGA AGGACUAG@LB@3'-UUU...CCGAU UAU C UACACUCGU A A A G CG-5'@LB@ | |@LB@ 68 2@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -42.8726 kcal/mol@LB@Unfolding Energy - mRNA 17.657 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 208 -- 287@LB@Position - sRNA 3 -- 67@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 3 -- 9@LB@ |
