| 113 |
0.01187 |
0.3513 |
b2901 |
bglA |
-10.39 |
0.163088 |
124 -- 152 |
36 -- 60 |
6-phospho-beta-glucosidase A |
|
_____________123___________________________153\n_____________|_____________________________|\n5'-UUC...UCAUC______A__U__AAAAAA___________UUGGC...GGC-3'\n______________CUGGAA_CG_UG______AGUGAUGUCGU\n______________||||||_|:_||______||::|||||||\n______________GACCUU_GU_AC______UCGUUACAGCA\n3'-UUU...AUUAU______C__U__AC_______________CGAAA...GCG-5'\n_____________|_____________________________|\n_____________61____________________________35\n |
146 -- 152 |
36 -- 42 |
-20.7652 kcal/mol |
7.06987 kcal/mol |
3.30077 kcal/mol |
123 153@LB@ | |@LB@5'-UUC...UCAUC A U AAAAAA UUGGC...GGC-3'@LB@ CUGGAA CG UG AGUGAUGUCGU@LB@ |||||| |: || ||::|||||||@LB@ GACCUU GU AC UCGUUACAGCA@LB@3'-UUU...AUUAU C U AC CGAAA...GCG-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -10.39 kcal/mol@LB@Hybridization Energy -20.7652 kcal/mol@LB@Unfolding Energy - mRNA 7.06987 kcal/mol@LB@Unfolding Energy - sRNA 3.30077 kcal/mol@LB@@LB@Position - mRNA 124 -- 152@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 80 |
0.007461 |
0.3134 |
b0925 |
ldtD |
-10.36 |
0.165445 |
187 -- 206 |
37 -- 61 |
murein L D-transpeptidase |
|
_____________186_______________________207\n_____________|_________________________|\n5'-AAG...UAAAA__A______________G_______CUUAA...CUG-3'\n______________AC_GGGGGCA_____AG_GAUGUUG\n______________||_||::|||_____||_:||||:|\n______________UG_CCUUCGU_____UC_UUACAGC\n3'-UUU...CAUUA__A_______UACAC__G_______ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
200 -- 206 |
37 -- 43 |
-19.2999 kcal/mol |
5.64293 kcal/mol |
3.30158 kcal/mol |
186 207@LB@ | |@LB@5'-AAG...UAAAA A G CUUAA...CUG-3'@LB@ AC GGGGGCA AG GAUGUUG@LB@ || ||::||| || :||||:|@LB@ UG CCUUCGU UC UUACAGC@LB@3'-UUU...CAUUA A UACAC G ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -19.2999 kcal/mol@LB@Unfolding Energy - mRNA 5.64293 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 187 -- 206@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 78 |
0.00737 |
0.3134 |
b2299 |
yfcD |
-10.35 |
0.165972 |
38 -- 78 |
49 -- 90 |
putative NUDIX hydrolase |
|
_____________37__________________________________________79\n_____________|___________________________________________|\n5'-AGA...AUUCC_____G____A_______GA____U_GC_______________ACGUA...AGU-3'\n______________GAAAG_CGGU_AUCCGGC__GUUA_G__AUGCUGGA__UAAUG\n______________:||||_|:|:_|:|||||__|:||_|__||:|||||__:||||\n______________UUUUC_GUCG_UGGGCCG__CGAU_C__UAUGACCU__GUUAC\n___________3'-_____G____________AC____U_AU________UC_____ACUCG...GCG-5'\n______________|__________________________________________|\n______________90_________________________________________48\n |
67 -- 73 |
56 -- 62 |
-41.1069 kcal/mol |
16.14 kcal/mol |
14.6203 kcal/mol |
37 79@LB@ | |@LB@5'-AGA...AUUCC G A GA U GC ACGUA...AGU-3'@LB@ GAAAG CGGU AUCCGGC GUUA G AUGCUGGA UAAUG@LB@ :|||| |:|: |:||||| |:|| | ||:||||| :||||@LB@ UUUUC GUCG UGGGCCG CGAU C UAUGACCU GUUAC@LB@ 3'- G AC U AU UC ACUCG...GCG-5'@LB@ | |@LB@ 90 48@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -41.1069 kcal/mol@LB@Unfolding Energy - mRNA 16.14 kcal/mol@LB@Unfolding Energy - sRNA 14.6203 kcal/mol@LB@@LB@Position - mRNA 38 -- 78@LB@Position - sRNA 49 -- 90@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 193 |
0.02468 |
0.4226 |
b0642 |
leuS |
-10.30 |
0.169116 |
191 -- 213 |
41 -- 61 |
leucyl-tRNA synthetase |
|
_____________190_____________________214\n_____________|_______________________|\n5'-AAU...GGACC_____CU__C___CAA_______ACCGC...AGA-3'\n______________ACUGG__GC_AUG___GAGCAAU\n______________|||||__||_|||___|||||||\n______________UGACC__CG_UAC___CUCGUUA\n3'-UUU...CAUUA_____UU__U___A_________CAGCA...GCG-5'\n_____________|_______________________|\n_____________62______________________40\n |
207 -- 213 |
41 -- 47 |
-20.8037 kcal/mol |
7.20782 kcal/mol |
3.30062 kcal/mol |
190 214@LB@ | |@LB@5'-AAU...GGACC CU C CAA ACCGC...AGA-3'@LB@ ACUGG GC AUG GAGCAAU@LB@ ||||| || ||| |||||||@LB@ UGACC CG UAC CUCGUUA@LB@3'-UUU...CAUUA UU U A CAGCA...GCG-5'@LB@ | |@LB@ 62 40@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -20.8037 kcal/mol@LB@Unfolding Energy - mRNA 7.20782 kcal/mol@LB@Unfolding Energy - sRNA 3.30062 kcal/mol@LB@@LB@Position - mRNA 191 -- 213@LB@Position - sRNA 41 -- 61@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 93 |
0.009691 |
0.3393 |
b2959 |
yggL |
-10.23 |
0.172987 |
12 -- 59 |
38 -- 83 |
DUF469 family protein |
|
_____________11_________________________________________________60\n_____________|__________________________________________________|\n5'-GUA...CAUAU___GA___A____GAACCUU____________U___CU__A_________UUCUA...CAU-3'\n______________GGC__CCG_CUGG_______AUGC_GGAA_CA_AUG__UG_AGUGAUGUC\n______________:||__|||_||||_______||:|_||||_||_|||__||_||::|||||\n______________UCG__GGC_GACC_______UAUG_CCUU_GU_UAC__AC_UCGUUACAG\n____3'-UUUUCGG___UG___C____GAUUCAU____A____C____________________CACGA...GCG-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________37\n |
53 -- 59 |
38 -- 44 |
-35.0381 kcal/mol |
9.91615 kcal/mol |
14.8888 kcal/mol |
11 60@LB@ | |@LB@5'-GUA...CAUAU GA A GAACCUU U CU A UUCUA...CAU-3'@LB@ GGC CCG CUGG AUGC GGAA CA AUG UG AGUGAUGUC@LB@ :|| ||| |||| ||:| |||| || ||| || ||::|||||@LB@ UCG GGC GACC UAUG CCUU GU UAC AC UCGUUACAG@LB@ 3'-UUUUCGG UG C GAUUCAU A C CACGA...GCG-5'@LB@ | |@LB@ 84 37@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -35.0381 kcal/mol@LB@Unfolding Energy - mRNA 9.91615 kcal/mol@LB@Unfolding Energy - sRNA 14.8888 kcal/mol@LB@@LB@Position - mRNA 12 -- 59@LB@Position - sRNA 38 -- 83@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 200 |
0.02516 |
0.4226 |
b2566 |
era |
-10.17 |
0.177109 |
195 -- 210 |
37 -- 61 |
membrane-associated 16S rRNA-binding GTPase |
|
_____________194_______________________211\n_____________|_________________________|\n5'-UUG...CUGGA_________________________AUAAA...UCU-3'\n______________GCUGGAA______UGAGCA___UCG\n______________:||||||______||||||___|||\n______________UGACCUU______ACUCGU___AGC\n3'-UUU...CAUUA_______CGUUAC______UAC___ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
195 -- 201 |
55 -- 61 |
-17.979 kcal/mol |
4.50899 kcal/mol |
3.30158 kcal/mol |
194 211@LB@ | |@LB@5'-UUG...CUGGA AUAAA...UCU-3'@LB@ GCUGGAA UGAGCA UCG@LB@ :|||||| |||||| |||@LB@ UGACCUU ACUCGU AGC@LB@3'-UUU...CAUUA CGUUAC UAC ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -17.979 kcal/mol@LB@Unfolding Energy - mRNA 4.50899 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 195 -- 210@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 18 |
0.001289 |
0.2406 |
b3930 |
menA |
-10.08 |
0.182848 |
73 -- 82 |
42 -- 51 |
1 4-dihydroxy-2-naphthoate octaprenyltransferase |
|
_____________72_________83\n_____________|__________|\n5'-AGC...AGAUU__________ACAUC...CGC-3'\n______________AUGUGAGCAA\n______________||||||||||\n______________UACACUCGUU\n3'-UUU...UUCGU__________ACAGC...GCG-5'\n_____________|__________|\n_____________52_________41\n |
76 -- 82 |
42 -- 48 |
-14.1762 kcal/mol |
2.92742 kcal/mol |
1.16834 kcal/mol |
72 83@LB@ | |@LB@5'-AGC...AGAUU ACAUC...CGC-3'@LB@ AUGUGAGCAA@LB@ ||||||||||@LB@ UACACUCGUU@LB@3'-UUU...UUCGU ACAGC...GCG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -14.1762 kcal/mol@LB@Unfolding Energy - mRNA 2.92742 kcal/mol@LB@Unfolding Energy - sRNA 1.16834 kcal/mol@LB@@LB@Position - mRNA 73 -- 82@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 30 |
0.002864 |
0.2776 |
b1863 |
ruvC |
-10.04 |
0.185852 |
89 -- 98 |
54 -- 63 |
component of RuvABC resolvasome endonuclease |
|
_____________88_________99\n_____________|__________|\n5'-AGC...UCGAU__________AUUGC...GCA-3'\n______________AUGCUGGAAG\n______________||:|||||||\n______________UAUGACCUUC\n3'-UUU...UUCAU__________GUUAC...GCG-5'\n_____________|__________|\n_____________64_________53\n |
92 -- 98 |
54 -- 60 |
-14.3659 kcal/mol |
1.62427 kcal/mol |
2.70635 kcal/mol |
88 99@LB@ | |@LB@5'-AGC...UCGAU AUUGC...GCA-3'@LB@ AUGCUGGAAG@LB@ ||:|||||||@LB@ UAUGACCUUC@LB@3'-UUU...UUCAU GUUAC...GCG-5'@LB@ | |@LB@ 64 53@LB@@LB@@LB@Energy -10.04 kcal/mol@LB@Hybridization Energy -14.3659 kcal/mol@LB@Unfolding Energy - mRNA 1.62427 kcal/mol@LB@Unfolding Energy - sRNA 2.70635 kcal/mol@LB@@LB@Position - mRNA 89 -- 98@LB@Position - sRNA 54 -- 63@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 195 |
0.0249 |
0.4226 |
b1476 |
fdnI |
-9.91 |
0.194140 |
190 -- 212 |
37 -- 58 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________189______________________213\n_____________|________________________|\n5'-CGU...GACGA_____AU__UCA____________AAAAU...UUU-3'\n______________GGAGG__CA___UGAGUAA_GUCG\n______________|||:|__||___||||:||_||||\n______________CCUUC__GU___ACUCGUU_CAGC\n3'-UUU...UAUGA_________UAC_______A____ACGAA...GCG-5'\n_____________|________________________|\n_____________59_______________________36\n |
202 -- 208 |
42 -- 48 |
-19.5397 kcal/mol |
6.39857 kcal/mol |
3.22699 kcal/mol |
189 213@LB@ | |@LB@5'-CGU...GACGA AU UCA AAAAU...UUU-3'@LB@ GGAGG CA UGAGUAA GUCG@LB@ |||:| || ||||:|| ||||@LB@ CCUUC GU ACUCGUU CAGC@LB@3'-UUU...UAUGA UAC A ACGAA...GCG-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -19.5397 kcal/mol@LB@Unfolding Energy - mRNA 6.39857 kcal/mol@LB@Unfolding Energy - sRNA 3.22699 kcal/mol@LB@@LB@Position - mRNA 190 -- 212@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 85 |
0.008408 |
0.3323 |
b1246 |
oppD |
-9.75 |
0.205761 |
38 -- 64 |
37 -- 61 |
oligopeptide ABC transporter ATPase |
|
_____________37__________________________65\n_____________|___________________________|\n5'-AGC...AAGCA_______U___U__C_________G__CGAAC...ACG-3'\n______________GCUGGGG_GCA_UG_UGAGUGAUG_CG\n______________:||||::_|||_||_||||::|||_||\n______________UGACCUU_CGU_AC_ACUCGUUAC_GC\n3'-UUU...CAUUA___________U____________A__ACGAA...GCG-5'\n_____________|___________________________|\n_____________62__________________________36\n |
55 -- 61 |
40 -- 46 |
-27.1525 kcal/mol |
14.0993 kcal/mol |
3.30158 kcal/mol |
37 65@LB@ | |@LB@5'-AGC...AAGCA U U C G CGAAC...ACG-3'@LB@ GCUGGGG GCA UG UGAGUGAUG CG@LB@ :||||:: ||| || ||||::||| ||@LB@ UGACCUU CGU AC ACUCGUUAC GC@LB@3'-UUU...CAUUA U A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -27.1525 kcal/mol@LB@Unfolding Energy - mRNA 14.0993 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 38 -- 64@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 40 -- 46@LB@ |
