| 41 |
0.003449 |
0.2776 |
b1908 |
yecA |
-17.18 |
0.011646 |
29 -- 47 |
36 -- 56 |
UPF0149 family protein |
|
_____________28____________________48\n_____________|_____________________|\n5'-UAC...AAUCA_______A_____________GAAAC...UGG-3'\n______________AAGCAAU___AGCAGUGUCGU\n______________|||||||___||||:||||||\n______________UUCGUUA___UCGUUACAGCA\n3'-UUU...UGACC_______CAC___________CGAAA...GCG-5'\n_____________|_____________________|\n_____________57____________________35\n |
41 -- 47 |
36 -- 42 |
-23.2486 kcal/mol |
2.84047 kcal/mol |
3.225 kcal/mol |
28 48@LB@ | |@LB@5'-UAC...AAUCA A GAAAC...UGG-3'@LB@ AAGCAAU AGCAGUGUCGU@LB@ ||||||| ||||:||||||@LB@ UUCGUUA UCGUUACAGCA@LB@3'-UUU...UGACC CAC CGAAA...GCG-5'@LB@ | |@LB@ 57 35@LB@@LB@@LB@Energy -17.18 kcal/mol@LB@Hybridization Energy -23.2486 kcal/mol@LB@Unfolding Energy - mRNA 2.84047 kcal/mol@LB@Unfolding Energy - sRNA 3.225 kcal/mol@LB@@LB@Position - mRNA 29 -- 47@LB@Position - sRNA 36 -- 56@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 42 |
0.003478 |
0.2776 |
b1882 |
cheY |
-11.00 |
0.130280 |
3 -- 21 |
36 -- 55 |
chemotaxis regulator transmitting signal to flagellar motor component |
|
_____________2____________________22\n_____________|____________________|\n_________5'-GC__G_____U___________CAGGC...UUG-3'\n______________GG_AAUGU_GGCGAUG_CGU\n______________:|_|||||_:||:|||_|||\n______________UC_UUACA_UCGUUAC_GCA\n3'-UUU...GACCU__G_____C_______A___CGAAA...GCG-5'\n_____________|____________________|\n_____________56___________________35\n |
12 -- 18 |
40 -- 46 |
-18.9303 kcal/mol |
4.70419 kcal/mol |
3.22441 kcal/mol |
2 22@LB@ | |@LB@ 5'-GC G U CAGGC...UUG-3'@LB@ GG AAUGU GGCGAUG CGU@LB@ :| ||||| :||:||| |||@LB@ UC UUACA UCGUUAC GCA@LB@3'-UUU...GACCU G C A CGAAA...GCG-5'@LB@ | |@LB@ 56 35@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -18.9303 kcal/mol@LB@Unfolding Energy - mRNA 4.70419 kcal/mol@LB@Unfolding Energy - sRNA 3.22441 kcal/mol@LB@@LB@Position - mRNA 3 -- 21@LB@Position - sRNA 36 -- 55@LB@Position Seed - mRNA 12 -- 18@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 43 |
0.003552 |
0.2776 |
b3453 |
ugpB |
-15.55 |
0.022327 |
231 -- 272 |
40 -- 85 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________230______________________________________________273\n_____________|________________________________________________|\n5'-UUC...CAGCA___________A_____GU_______G_____U___CA__________ACGAC...UGG-3'\n______________CUGGCGCUCGG_CUGGC____UAAUG__GGAA_GCA_____GGCAGUG\n______________|::||:|:|||_|||||____||||:__||||_|||_____:|||:||\n______________GGUCGUGGGCC_GACCG____AUUAU__CCUU_CGU_____UCGUUAC\n______3'-UUUUC_________________AUUC_____GA________UACAC_______AGCAC...GCG-5'\n_____________|________________________________________________|\n_____________86_______________________________________________39\n |
266 -- 272 |
40 -- 46 |
-44.9281 kcal/mol |
14.4718 kcal/mol |
14.9103 kcal/mol |
230 273@LB@ | |@LB@5'-UUC...CAGCA A GU G U CA ACGAC...UGG-3'@LB@ CUGGCGCUCGG CUGGC UAAUG GGAA GCA GGCAGUG@LB@ |::||:|:||| ||||| ||||: |||| ||| :|||:||@LB@ GGUCGUGGGCC GACCG AUUAU CCUU CGU UCGUUAC@LB@ 3'-UUUUC AUUC GA UACAC AGCAC...GCG-5'@LB@ | |@LB@ 86 39@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -44.9281 kcal/mol@LB@Unfolding Energy - mRNA 14.4718 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 231 -- 272@LB@Position - sRNA 40 -- 85@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 44 |
0.003649 |
0.2787 |
b0147 |
ligT |
-12.24 |
0.081601 |
33 -- 98 |
26 -- 85 |
2'-5' RNA ligase |
|
_____________32____________________________________________________________________99\n_____________|_____________________________________________________________________|\n5'-CCA...AUUUC____________C___GCACUUAA_____C___C__C___CAAUCGA_______AA___AA________AAGAC...CGG-3'\n______________CCGGC_CCCGGU_GGC________UAAUA_CUG_GG_GCA_______GAGCGGU___GU___UUCAGGU\n______________||:||_|||||:_|||________|||||_|||_|:_|||_______||||::|___||___|||||||\n______________GGUCG_GGGCCG_CCG________AUUAU_GAC_CU_CGU_______CUCGUUA___CA___AAGUCCA\n______3'-UUUUC_____U______A___AUUC________________U___UACA__________CAG__CGA_______AGAGG...GCG-5'\n_____________|_____________________________________________________________________|\n_____________86____________________________________________________________________25\n |
92 -- 98 |
26 -- 32 |
-49.8324 kcal/mol |
18.0057 kcal/mol |
19.5911 kcal/mol |
32 99@LB@ | |@LB@5'-CCA...AUUUC C GCACUUAA C C C CAAUCGA AA AA AAGAC...CGG-3'@LB@ CCGGC CCCGGU GGC UAAUA CUG GG GCA GAGCGGU GU UUCAGGU@LB@ ||:|| |||||: ||| ||||| ||| |: ||| ||||::| || |||||||@LB@ GGUCG GGGCCG CCG AUUAU GAC CU CGU CUCGUUA CA AAGUCCA@LB@ 3'-UUUUC U A AUUC U UACA CAG CGA AGAGG...GCG-5'@LB@ | |@LB@ 86 25@LB@@LB@@LB@Energy -12.24 kcal/mol@LB@Hybridization Energy -49.8324 kcal/mol@LB@Unfolding Energy - mRNA 18.0057 kcal/mol@LB@Unfolding Energy - sRNA 19.5911 kcal/mol@LB@@LB@Position - mRNA 33 -- 98@LB@Position - sRNA 26 -- 85@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 45 |
0.00394 |
0.2905 |
b4551 |
yheV |
-11.41 |
0.111890 |
172 -- 193 |
40 -- 61 |
DUF2387 family putative metal-binding protein |
|
_____________171____________________194\n_____________|______________________|\n5'-AUC...GGACG_______UG___U_______A_GGUAA...UUG-3'\n______________GCUGGGA__AAU_UGAGUAG_G\n______________:||||:|__|||_||||:|:_|\n______________UGACCUU__UUA_ACUCGUU_C\n3'-UUU...CAUUA_______CG___C_______A_AGCAC...GCG-5'\n_____________|______________________|\n_____________62_____________________39\n |
185 -- 191 |
42 -- 48 |
-20.0831 kcal/mol |
5.37544 kcal/mol |
3.30075 kcal/mol |
171 194@LB@ | |@LB@5'-AUC...GGACG UG U A GGUAA...UUG-3'@LB@ GCUGGGA AAU UGAGUAG G@LB@ :||||:| ||| ||||:|: |@LB@ UGACCUU UUA ACUCGUU C@LB@3'-UUU...CAUUA CG C A AGCAC...GCG-5'@LB@ | |@LB@ 62 39@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -20.0831 kcal/mol@LB@Unfolding Energy - mRNA 5.37544 kcal/mol@LB@Unfolding Energy - sRNA 3.30075 kcal/mol@LB@@LB@Position - mRNA 172 -- 193@LB@Position - sRNA 40 -- 61@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 46 |
0.004112 |
0.2905 |
b3263 |
yhdU |
-13.66 |
0.046979 |
167 -- 251 |
6 -- 86 |
putative membrane protein |
|
_____________166______________________________________________________________________________________________252\n_____________|________________________________________________________________________________________________|\n5'-GAU...UUCCU______________AAACAUGCACA____C________AUUC_C_____U__GU___________C_______CUG____________________UUUGA...CAG-3'\n______________GCCAG_ACUUGGUU___________GGCU_AGGUAAUG____G_AAGUA_UG__GGC____UCGU_GUUUUCG___UCUUCGU______UUUUCUG\n______________|||||_||::||:|___________||||_|:|||||:____|_|||:|_||__:||____||||_|:||||:___|||:||:______:||:|||\n______________CGGUC_UGGGCCGA___________CCGA_UUCAUUAU____C_UUCGU_AC__UCG____AGCA_CGAAAGU___AGAGGCG______GAAGGAC\n_______3'-UUUU_____G________________________________GAC________U__AC___UUAC____________CCA_______CUCCCA_______UAGCG-5'\n_____________|________________________________________________________________________________________________|\n_____________87_______________________________________________________________________________________________5\n |
245 -- 251 |
6 -- 12 |
-59.7696 kcal/mol |
20.3812 kcal/mol |
25.7297 kcal/mol |
166 252@LB@ | |@LB@5'-GAU...UUCCU AAACAUGCACA C AUUC C U GU C CUG UUUGA...CAG-3'@LB@ GCCAG ACUUGGUU GGCU AGGUAAUG G AAGUA UG GGC UCGU GUUUUCG UCUUCGU UUUUCUG@LB@ ||||| ||::||:| |||| |:|||||: | |||:| || :|| |||| |:||||: |||:||: :||:|||@LB@ CGGUC UGGGCCGA CCGA UUCAUUAU C UUCGU AC UCG AGCA CGAAAGU AGAGGCG GAAGGAC@LB@ 3'-UUUU G GAC U AC UUAC CCA CUCCCA UAGCG-5'@LB@ | |@LB@ 87 5@LB@@LB@@LB@Energy -13.66 kcal/mol@LB@Hybridization Energy -59.7696 kcal/mol@LB@Unfolding Energy - mRNA 20.3812 kcal/mol@LB@Unfolding Energy - sRNA 25.7297 kcal/mol@LB@@LB@Position - mRNA 167 -- 251@LB@Position - sRNA 6 -- 86@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 47 |
0.004313 |
0.2905 |
b3739 |
atpI |
-14.34 |
0.035947 |
179 -- 205 |
38 -- 58 |
ATP synthase membrane-bound accessory factor |
|
_____________178_________________________206\n_____________|___________________________|\n5'-GAA...UCGAA________GA____AAAAC________UGUGU...ACC-3'\n______________GGGAGCAG__GUGA_____GUGAUGUC\n______________||:||||:__||||_____|::|||||\n______________CCUUCGUU__CACU_____CGUUACAG\n3'-UUU...UAUGA________A__________________CACGA...GCG-5'\n_____________|___________________________|\n_____________59__________________________37\n |
199 -- 205 |
38 -- 44 |
-24.0387 kcal/mol |
6.48162 kcal/mol |
3.21639 kcal/mol |
178 206@LB@ | |@LB@5'-GAA...UCGAA GA AAAAC UGUGU...ACC-3'@LB@ GGGAGCAG GUGA GUGAUGUC@LB@ ||:||||: |||| |::|||||@LB@ CCUUCGUU CACU CGUUACAG@LB@3'-UUU...UAUGA A CACGA...GCG-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -24.0387 kcal/mol@LB@Unfolding Energy - mRNA 6.48162 kcal/mol@LB@Unfolding Energy - sRNA 3.21639 kcal/mol@LB@@LB@Position - mRNA 179 -- 205@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 48 |
0.004482 |
0.2905 |
b4045 |
yjbJ |
-14.69 |
0.031336 |
242 -- 268 |
42 -- 68 |
stress-induced protein UPF0337 family |
|
_____________241___________________________269\n_____________|_____________________________|\n5'-CGU...UUUAA________G__AAA_______________ACUGA...AAG-3'\n______________AGGUAA_A_UG___GAGCAAUG_GGGCAA\n______________|:||||_|_||___:|||||||_|:||||\n______________UUCAUU_U_AC___UUCGUUAC_CUCGUU\n3'-UUU...ACCGA______A_G__C__________A______ACAGC...GCG-5'\n_____________|_____________________________|\n_____________69____________________________41\n |
256 -- 262 |
49 -- 55 |
-22.1594 kcal/mol |
4.16538 kcal/mol |
3.30492 kcal/mol |
241 269@LB@ | |@LB@5'-CGU...UUUAA G AAA ACUGA...AAG-3'@LB@ AGGUAA A UG GAGCAAUG GGGCAA@LB@ |:|||| | || :||||||| |:||||@LB@ UUCAUU U AC UUCGUUAC CUCGUU@LB@3'-UUU...ACCGA A G C A ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -14.69 kcal/mol@LB@Hybridization Energy -22.1594 kcal/mol@LB@Unfolding Energy - mRNA 4.16538 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 242 -- 268@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 49 |
0.004671 |
0.2905 |
b3184 |
yhbE |
-14.90 |
0.028775 |
284 -- 299 |
49 -- 64 |
EamA family inner membrane putative transporter |
|
_____________283______________300\n_____________|________________|\n5'-AAG...AAGCA________________G-3'\n______________GGUGCUGGAGGUGAUG\n______________::|:|||||:|::|||\n______________UUAUGACCUUCGUUAC\n3'-UUU...AUUCA________________ACUCG...GCG-5'\n_____________|________________|\n_____________65_______________48\n |
293 -- 299 |
49 -- 55 |
-22.6177 kcal/mol |
4.70237 kcal/mol |
3.01036 kcal/mol |
283 300@LB@ | |@LB@5'-AAG...AAGCA G-3'@LB@ GGUGCUGGAGGUGAUG@LB@ ::|:|||||:|::|||@LB@ UUAUGACCUUCGUUAC@LB@3'-UUU...AUUCA ACUCG...GCG-5'@LB@ | |@LB@ 65 48@LB@@LB@@LB@Energy -14.90 kcal/mol@LB@Hybridization Energy -22.6177 kcal/mol@LB@Unfolding Energy - mRNA 4.70237 kcal/mol@LB@Unfolding Energy - sRNA 3.01036 kcal/mol@LB@@LB@Position - mRNA 284 -- 299@LB@Position - sRNA 49 -- 64@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 50 |
0.004678 |
0.2905 |
b0906 |
ycaP |
-14.80 |
0.029952 |
1 -- 24 |
40 -- 67 |
UPF0702 family putative inner membrane protein |
|
______________1____________________________25\n______________|____________________________|\n___________5'-___UUU_______________________GAAUC...UCU-3'\n______________AGU___UGCUGGAAGC_____GAGCGAUG\n______________|||___|:||||||||_____||||:|||\n______________UCA___AUGACCUUCG_____CUCGUUAC\n3'-UUU...CCGAU___UU___________UUACA________AGCAC...GCG-5'\n_____________|_____________________________|\n_____________68____________________________39\n |
18 -- 24 |
40 -- 46 |
-27.5061 kcal/mol |
9.39751 kcal/mol |
3.30504 kcal/mol |
1 25@LB@ | |@LB@ 5'- UUU GAAUC...UCU-3'@LB@ AGU UGCUGGAAGC GAGCGAUG@LB@ ||| |:|||||||| ||||:|||@LB@ UCA AUGACCUUCG CUCGUUAC@LB@3'-UUU...CCGAU UU UUACA AGCAC...GCG-5'@LB@ | |@LB@ 68 39@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -27.5061 kcal/mol@LB@Unfolding Energy - mRNA 9.39751 kcal/mol@LB@Unfolding Energy - sRNA 3.30504 kcal/mol@LB@@LB@Position - mRNA 1 -- 24@LB@Position - sRNA 40 -- 67@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 40 -- 46@LB@ |
