| 171 |
0.02102 |
0.4072 |
b1747 |
astA |
-10.86 |
0.137376 |
74 -- 103 |
34 -- 65 |
arginine succinyltransferase |
|
_____________73_______________________________104\n_____________|________________________________|\n5'-GGC...CGUGA________AUU_____________C__G____GUUUU...AAG-3'\n______________UGGUACUG___GCGG_GUG_GCAA_GU_GUGC\n______________|::|||||___||::_|||_||||_||_||||\n______________AUUAUGAC___CGUU_CAC_CGUU_CA_CACG\n3'-UUU...GAUUC________CUU____A___U____A__G____AAAGU...GCG-5'\n_____________|________________________________|\n_____________66_______________________________33\n |
75 -- 81 |
58 -- 64 |
-29.9398 kcal/mol |
12.3081 kcal/mol |
6.77229 kcal/mol |
73 104@LB@ | |@LB@5'-GGC...CGUGA AUU C G GUUUU...AAG-3'@LB@ UGGUACUG GCGG GUG GCAA GU GUGC@LB@ |::||||| ||:: ||| |||| || ||||@LB@ AUUAUGAC CGUU CAC CGUU CA CACG@LB@3'-UUU...GAUUC CUU A U A G AAAGU...GCG-5'@LB@ | |@LB@ 66 33@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -29.9398 kcal/mol@LB@Unfolding Energy - mRNA 12.3081 kcal/mol@LB@Unfolding Energy - sRNA 6.77229 kcal/mol@LB@@LB@Position - mRNA 74 -- 103@LB@Position - sRNA 34 -- 65@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 172 |
0.02103 |
0.4072 |
b2043 |
wcaM |
-13.25 |
0.055075 |
7 -- 38 |
49 -- 84 |
colanic acid biosynthesis protein |
|
_____________6_____________________________________39\n_____________|_____________________________________|\n_____5'-GGCUGA__A__________________C_____A_________CUCGC...AAA-3'\n______________CA__AUCCGGCUGGCU_GGUG___CUG_GAA_CGAUG\n______________||__|:||||||||||_:||:___|||_|||_|:|||\n______________GU__UGGGCCGACCGA_UCAU___GAC_CUU_GUUAC\n_____3'-UUUUCG__CG____________U____UAU_______C_____ACUCG...GCG-5'\n_____________|_____________________________________|\n_____________85____________________________________48\n |
15 -- 21 |
69 -- 75 |
-36.8983 kcal/mol |
9.08712 kcal/mol |
14.5597 kcal/mol |
6 39@LB@ | |@LB@ 5'-GGCUGA A C A CUCGC...AAA-3'@LB@ CA AUCCGGCUGGCU GGUG CUG GAA CGAUG@LB@ || |:|||||||||| :||: ||| ||| |:|||@LB@ GU UGGGCCGACCGA UCAU GAC CUU GUUAC@LB@ 3'-UUUUCG CG U UAU C ACUCG...GCG-5'@LB@ | |@LB@ 85 48@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -36.8983 kcal/mol@LB@Unfolding Energy - mRNA 9.08712 kcal/mol@LB@Unfolding Energy - sRNA 14.5597 kcal/mol@LB@@LB@Position - mRNA 7 -- 38@LB@Position - sRNA 49 -- 84@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 173 |
0.02105 |
0.4072 |
b2840 |
ygeA |
-11.88 |
0.093670 |
213 -- 233 |
44 -- 67 |
Asp/Glu_racemase family protein |
|
_____________212______________________234\n_____________|________________________|\n5'-AAA...CAAUU___U__________G_________UGGGA...UUC-3'\n______________GGU__UGCUGGGAG_AA__UGAGC\n______________:||__|:||||:||_||__|||||\n______________UCA__AUGACCUUC_UU__ACUCG\n3'-UUU...CCGAU___UU_________G__AC_____UUACA...GCG-5'\n_____________|________________________|\n_____________68_______________________43\n |
219 -- 225 |
54 -- 60 |
-22.3324 kcal/mol |
7.15309 kcal/mol |
3.30407 kcal/mol |
212 234@LB@ | |@LB@5'-AAA...CAAUU U G UGGGA...UUC-3'@LB@ GGU UGCUGGGAG AA UGAGC@LB@ :|| |:||||:|| || |||||@LB@ UCA AUGACCUUC UU ACUCG@LB@3'-UUU...CCGAU UU G AC UUACA...GCG-5'@LB@ | |@LB@ 68 43@LB@@LB@@LB@Energy -11.88 kcal/mol@LB@Hybridization Energy -22.3324 kcal/mol@LB@Unfolding Energy - mRNA 7.15309 kcal/mol@LB@Unfolding Energy - sRNA 3.30407 kcal/mol@LB@@LB@Position - mRNA 213 -- 233@LB@Position - sRNA 44 -- 67@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 174 |
0.02116 |
0.4072 |
b3081 |
fadH |
-11.31 |
0.116093 |
186 -- 215 |
37 -- 63 |
2 4-dienoyl-CoA reductase NADH and FMN-linked |
|
_____________185______________________________216\n_____________|________________________________|\n5'-UGG...UUUAC______________UUUA_____UACCC____CUGUU...ACC-3'\n______________AUACUGGA__CAAU____UGAGC_____GUCG\n______________||||||||__||||____|||||_____||||\n______________UAUGACCU__GUUA____ACUCG_____CAGC\n3'-UUU...UUCAU________UC____C________UUA______ACGAA...GCG-5'\n_____________|________________________________|\n_____________64_______________________________36\n |
187 -- 193 |
56 -- 62 |
-21.1868 kcal/mol |
6.57497 kcal/mol |
3.30267 kcal/mol |
185 216@LB@ | |@LB@5'-UGG...UUUAC UUUA UACCC CUGUU...ACC-3'@LB@ AUACUGGA CAAU UGAGC GUCG@LB@ |||||||| |||| ||||| ||||@LB@ UAUGACCU GUUA ACUCG CAGC@LB@3'-UUU...UUCAU UC C UUA ACGAA...GCG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -21.1868 kcal/mol@LB@Unfolding Energy - mRNA 6.57497 kcal/mol@LB@Unfolding Energy - sRNA 3.30267 kcal/mol@LB@@LB@Position - mRNA 186 -- 215@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 175 |
0.02121 |
0.4072 |
b4592 |
cbdX |
-9.01 |
0.266875 |
56 -- 82 |
33 -- 61 |
putative cytochrome bd-II oxidase subunit |
|
_____________55______________________________83\n_____________|_______________________________|\n5'-GCG...CUGAC__________UU____U______________GAUAU...CGU-3'\n______________GCUG__AGCA__AUGU_GGUAA__UCGUGCU\n______________:|||__||||__||||_:|:||__|||||||\n______________UGAC__UCGU__UACA_UCGUU__AGCACGA\n3'-UUU...CAUUA____CU__________C_____AC_______AAGUC...GCG-5'\n_____________|_______________________________|\n_____________62______________________________32\n |
76 -- 82 |
33 -- 39 |
-24.6928 kcal/mol |
8.91736 kcal/mol |
6.76812 kcal/mol |
55 83@LB@ | |@LB@5'-GCG...CUGAC UU U GAUAU...CGU-3'@LB@ GCUG AGCA AUGU GGUAA UCGUGCU@LB@ :||| |||| |||| :|:|| |||||||@LB@ UGAC UCGU UACA UCGUU AGCACGA@LB@3'-UUU...CAUUA CU C AC AAGUC...GCG-5'@LB@ | |@LB@ 62 32@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -24.6928 kcal/mol@LB@Unfolding Energy - mRNA 8.91736 kcal/mol@LB@Unfolding Energy - sRNA 6.76812 kcal/mol@LB@@LB@Position - mRNA 56 -- 82@LB@Position - sRNA 33 -- 61@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 176 |
0.02184 |
0.4113 |
b0153 |
fhuB |
-8.75 |
0.291577 |
190 -- 208 |
42 -- 58 |
iron(3+)-hydroxamate import ABC transporter permease |
|
_____________189_________________209\n_____________|___________________|\n5'-UAU...CCAUC________AGC________ACGAA...CGC-3'\n______________GGAGGUAA___GUGAGUAA\n______________|||:|:||___|||||:||\n______________CCUUCGUU___CACUCGUU\n3'-UUU...UAUGA________A__________ACAGC...GCG-5'\n_____________|___________________|\n_____________59__________________41\n |
202 -- 208 |
42 -- 48 |
-20.4106 kcal/mol |
8.45448 kcal/mol |
3.2101 kcal/mol |
189 209@LB@ | |@LB@5'-UAU...CCAUC AGC ACGAA...CGC-3'@LB@ GGAGGUAA GUGAGUAA@LB@ |||:|:|| |||||:||@LB@ CCUUCGUU CACUCGUU@LB@3'-UUU...UAUGA A ACAGC...GCG-5'@LB@ | |@LB@ 59 41@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -20.4106 kcal/mol@LB@Unfolding Energy - mRNA 8.45448 kcal/mol@LB@Unfolding Energy - sRNA 3.2101 kcal/mol@LB@@LB@Position - mRNA 190 -- 208@LB@Position - sRNA 42 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 177 |
0.02193 |
0.4113 |
b4136 |
dsbD |
-10.49 |
0.157561 |
37 -- 60 |
42 -- 62 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________36_______________________61\n_____________|________________________|\n5'-UGC...UCUAU_______AA_____GCUG______GAAUA...CGG-3'\n______________UACUGGG__GGUAA____GAGCAA\n______________||||||:__:|:||____||||||\n______________AUGACCU__UCGUU____CUCGUU\n3'-UUU...UCAUU______________ACA_______ACAGC...GCG-5'\n_____________|________________________|\n_____________63_______________________41\n |
37 -- 43 |
56 -- 62 |
-20.3754 kcal/mol |
6.58529 kcal/mol |
3.30151 kcal/mol |
36 61@LB@ | |@LB@5'-UGC...UCUAU AA GCUG GAAUA...CGG-3'@LB@ UACUGGG GGUAA GAGCAA@LB@ ||||||: :|:|| ||||||@LB@ AUGACCU UCGUU CUCGUU@LB@3'-UUU...UCAUU ACA ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -20.3754 kcal/mol@LB@Unfolding Energy - mRNA 6.58529 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 37 -- 60@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 178 |
0.02201 |
0.4113 |
b4176 |
yjeT |
-16.79 |
0.013635 |
217 -- 249 |
54 -- 87 |
DUF2065 family protein |
|
_____________216_________________________________250\n_____________|___________________________________|\n5'-UCA...AAUCU____________CC______U______________GUUUA...CGA-3'\n______________GGCUGGCGCUUG__CUGGUU___UGGUACUGGAAG\n______________:||::||:|::|__||||:|___|::|||||||||\n______________UCGGUCGUGGGC__GACCGA___AUUAUGACCUUC\n________3'-UUU____________C_______UUC____________GUUAC...GCG-5'\n_____________|___________________________________|\n_____________88__________________________________53\n |
243 -- 249 |
54 -- 60 |
-41.1583 kcal/mol |
10.0538 kcal/mol |
14.3172 kcal/mol |
216 250@LB@ | |@LB@5'-UCA...AAUCU CC U GUUUA...CGA-3'@LB@ GGCUGGCGCUUG CUGGUU UGGUACUGGAAG@LB@ :||::||:|::| ||||:| |::|||||||||@LB@ UCGGUCGUGGGC GACCGA AUUAUGACCUUC@LB@ 3'-UUU C UUC GUUAC...GCG-5'@LB@ | |@LB@ 88 53@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -41.1583 kcal/mol@LB@Unfolding Energy - mRNA 10.0538 kcal/mol@LB@Unfolding Energy - sRNA 14.3172 kcal/mol@LB@@LB@Position - mRNA 217 -- 249@LB@Position - sRNA 54 -- 87@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 179 |
0.02212 |
0.4113 |
b3317 |
rplB |
-11.24 |
0.118994 |
191 -- 218 |
39 -- 68 |
50S ribosomal subunit protein L2 |
|
_____________190____________________________219\n_____________|______________________________|\n5'-GCA...CGGAG_________AAU__________UUA_____AAACC...UGC-3'\n______________GAGUAAUAC____GGCAGU_UG___AAUGU\n______________:||||||||____:|||:|_||___|||||\n______________UUCAUUAUG____UCGUUA_AC___UUACA\n3'-UUU...ACCGA_________ACCU______C__UCG_____GCACG...GCG-5'\n_____________|______________________________|\n_____________69_____________________________38\n |
193 -- 199 |
60 -- 66 |
-19.7264 kcal/mol |
5.17772 kcal/mol |
3.30515 kcal/mol |
190 219@LB@ | |@LB@5'-GCA...CGGAG AAU UUA AAACC...UGC-3'@LB@ GAGUAAUAC GGCAGU UG AAUGU@LB@ :|||||||| :|||:| || |||||@LB@ UUCAUUAUG UCGUUA AC UUACA@LB@3'-UUU...ACCGA ACCU C UCG GCACG...GCG-5'@LB@ | |@LB@ 69 38@LB@@LB@@LB@Energy -11.24 kcal/mol@LB@Hybridization Energy -19.7264 kcal/mol@LB@Unfolding Energy - mRNA 5.17772 kcal/mol@LB@Unfolding Energy - sRNA 3.30515 kcal/mol@LB@@LB@Position - mRNA 191 -- 218@LB@Position - sRNA 39 -- 68@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 60 -- 66@LB@ |
| 180 |
0.02216 |
0.4113 |
b4123 |
dcuB |
-12.05 |
0.087474 |
186 -- 195 |
12 -- 21 |
C4-dicarboxylate transporter anaerobic; DcuS co-sensor |
|
_____________185________196\n_____________|__________|\n5'-UCU...AUUAU__________CACAC...UGG-3'\n______________CGCGAGGGUU\n______________|||||||||:\n______________GCGCUCCCAG\n3'-UUU...AAGAG__________AAGGA...GCG-5'\n_____________|__________|\n_____________22_________11\n |
189 -- 195 |
12 -- 18 |
-19.9032 kcal/mol |
3.47865 kcal/mol |
4.37028 kcal/mol |
185 196@LB@ | |@LB@5'-UCU...AUUAU CACAC...UGG-3'@LB@ CGCGAGGGUU@LB@ |||||||||:@LB@ GCGCUCCCAG@LB@3'-UUU...AAGAG AAGGA...GCG-5'@LB@ | |@LB@ 22 11@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -19.9032 kcal/mol@LB@Unfolding Energy - mRNA 3.47865 kcal/mol@LB@Unfolding Energy - sRNA 4.37028 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 12 -- 21@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
