| 151 |
0.01843 |
0.4072 |
b4028 |
yjbG |
-13.08 |
0.058794 |
282 -- 297 |
40 -- 55 |
extracellular polysaccharide export OMA protein |
|
_____________281______________298\n_____________|________________|\n5'-AAA...UGUUC_______GC_______AGG-3'\n______________AGCAAUG__AGCAGUG\n______________|||||||__||||:||\n______________UCGUUAC__UCGUUAC\n3'-UUU...GACCU_______AC_______AGCAC...GCG-5'\n_____________|________________|\n_____________56_______________39\n |
291 -- 297 |
40 -- 46 |
-18.8155 kcal/mol |
2.52344 kcal/mol |
3.20849 kcal/mol |
281 298@LB@ | |@LB@5'-AAA...UGUUC GC AGG-3'@LB@ AGCAAUG AGCAGUG@LB@ ||||||| ||||:||@LB@ UCGUUAC UCGUUAC@LB@3'-UUU...GACCU AC AGCAC...GCG-5'@LB@ | |@LB@ 56 39@LB@@LB@@LB@Energy -13.08 kcal/mol@LB@Hybridization Energy -18.8155 kcal/mol@LB@Unfolding Energy - mRNA 2.52344 kcal/mol@LB@Unfolding Energy - sRNA 3.20849 kcal/mol@LB@@LB@Position - mRNA 282 -- 297@LB@Position - sRNA 40 -- 55@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 152 |
0.0188 |
0.4072 |
b0950 |
pqiA |
-8.64 |
0.302533 |
34 -- 75 |
1 -- 61 |
paraquat-inducible SoxRS-regulated inner membrane protein |
|
_____________33_____________________________________________________________76\n_____________|______________________________________________________________|\n5'-CUG...UGAAC__________UCU__A______________________AAAAAAU_____GG__________AAAAU...GUC-3'\n______________GCUGGGAGUA___UG_AGC________________GUU_________GGU____CUGAUCGC\n______________:||||:||:|___||_|||________________|||_________|||____||||||||\n______________UGACCUUCGU___AC_UCG________________CAA_________CCA____GACUAGCG\n3'-UUU...CAUUA__________UAC______UUACAGCACGAAAGUC___GAGGCGCUC___GAAG________-5'\n_____________|_____________________________________________________________|\n_____________62____________________________________________________________1\n |
69 -- 75 |
1 -- 7 |
-32.0531 kcal/mol |
9.29686 kcal/mol |
14.1206 kcal/mol |
33 76@LB@ | |@LB@5'-CUG...UGAAC UCU A AAAAAAU GG AAAAU...GUC-3'@LB@ GCUGGGAGUA UG AGC GUU GGU CUGAUCGC@LB@ :||||:||:| || ||| ||| ||| ||||||||@LB@ UGACCUUCGU AC UCG CAA CCA GACUAGCG@LB@3'-UUU...CAUUA UAC UUACAGCACGAAAGUC GAGGCGCUC GAAG -5'@LB@ | |@LB@ 62 1@LB@@LB@@LB@Energy -8.64 kcal/mol@LB@Hybridization Energy -32.0531 kcal/mol@LB@Unfolding Energy - mRNA 9.29686 kcal/mol@LB@Unfolding Energy - sRNA 14.1206 kcal/mol@LB@@LB@Position - mRNA 34 -- 75@LB@Position - sRNA 1 -- 61@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 153 |
0.01881 |
0.4072 |
b3524 |
yhjG |
-16.11 |
0.017836 |
180 -- 208 |
42 -- 68 |
putative inner membrane-anchored periplasmic AsmA family protein |
|
_____________179____________________________209\n_____________|______________________________|\n5'-UUG...ACAGG_________GA________ACGA_______GGCAG...GAC-3'\n______________AAG_AAUAU__GGAAGCGA____UGAGCAA\n______________|||_||||:__||||||:|____|||||||\n______________UUC_UUAUG__CCUUCGUU____ACUCGUU\n3'-UUU...ACCGA___A_____A_________AC_________ACAGC...GCG-5'\n_____________|______________________________|\n_____________69_____________________________41\n |
202 -- 208 |
42 -- 48 |
-23.3114 kcal/mol |
3.89448 kcal/mol |
3.30492 kcal/mol |
179 209@LB@ | |@LB@5'-UUG...ACAGG GA ACGA GGCAG...GAC-3'@LB@ AAG AAUAU GGAAGCGA UGAGCAA@LB@ ||| ||||: ||||||:| |||||||@LB@ UUC UUAUG CCUUCGUU ACUCGUU@LB@3'-UUU...ACCGA A A AC ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -23.3114 kcal/mol@LB@Unfolding Energy - mRNA 3.89448 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 180 -- 208@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 154 |
0.01903 |
0.4072 |
b2823 |
ppdC |
-17.47 |
0.010387 |
242 -- 260 |
40 -- 58 |
putative prepilin peptidase-dependent protein |
|
_____________241_________________261\n_____________|___________________|\n5'-ACG...CUGCC___________U_______GUGUU...UCC-3'\n______________GGAGGUAAUGU_GGCGAUG\n______________|||:|:|||||_:||:|||\n______________CCUUCGUUACA_UCGUUAC\n3'-UUU...UAUGA___________C_______AGCAC...GCG-5'\n_____________|___________________|\n_____________59__________________39\n |
254 -- 260 |
40 -- 46 |
-26.2879 kcal/mol |
5.60197 kcal/mol |
3.21578 kcal/mol |
241 261@LB@ | |@LB@5'-ACG...CUGCC U GUGUU...UCC-3'@LB@ GGAGGUAAUGU GGCGAUG@LB@ |||:|:||||| :||:|||@LB@ CCUUCGUUACA UCGUUAC@LB@3'-UUU...UAUGA C AGCAC...GCG-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -17.47 kcal/mol@LB@Hybridization Energy -26.2879 kcal/mol@LB@Unfolding Energy - mRNA 5.60197 kcal/mol@LB@Unfolding Energy - sRNA 3.21578 kcal/mol@LB@@LB@Position - mRNA 242 -- 260@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 155 |
0.01913 |
0.4072 |
b2022 |
hisB |
-9.38 |
0.234588 |
182 -- 245 |
3 -- 62 |
histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase |
|
_____________181__________________________________________________________________246\n_____________|____________________________________________________________________|\n5'-CAG...CGCCU___G__C_______GUU__A_____CAGAA___AU_____UA____GA______U__AAC________AGCGA...AAC-3'\n______________UAC_UG_GGAGCAA___UG_UGAGU______GU__CUUUU____UC__UCGCGA_GG____CCUGAUU\n______________|||_||_|:|||||___||_||||:______||__||||:____||__:|||||_||____||||||:\n______________AUG_AC_CUUCGUU___AC_ACUCG______CA__GAAAG____AG__GGCGCU_CC____GGACUAG\n3'-UUU...UCAUU_________________________UUACAG__C______UCCA__A_______C__AGAA_______CG-5'\n_____________|____________________________________________________________________|\n_____________63___________________________________________________________________2\n |
239 -- 245 |
3 -- 9 |
-38.4245 kcal/mol |
14.9226 kcal/mol |
14.1216 kcal/mol |
181 246@LB@ | |@LB@5'-CAG...CGCCU G C GUU A CAGAA AU UA GA U AAC AGCGA...AAC-3'@LB@ UAC UG GGAGCAA UG UGAGU GU CUUUU UC UCGCGA GG CCUGAUU@LB@ ||| || |:||||| || ||||: || ||||: || :||||| || ||||||:@LB@ AUG AC CUUCGUU AC ACUCG CA GAAAG AG GGCGCU CC GGACUAG@LB@3'-UUU...UCAUU UUACAG C UCCA A C AGAA CG-5'@LB@ | |@LB@ 63 2@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -38.4245 kcal/mol@LB@Unfolding Energy - mRNA 14.9226 kcal/mol@LB@Unfolding Energy - sRNA 14.1216 kcal/mol@LB@@LB@Position - mRNA 182 -- 245@LB@Position - sRNA 3 -- 62@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 156 |
0.0192 |
0.4072 |
b0472 |
recR |
-11.39 |
0.112512 |
68 -- 82 |
54 -- 68 |
gap repair protein |
|
_____________67______________83\n_____________|_______________|\n5'-GUG...CGACA___A___________ACCUG...UUC-3'\n______________AAG_GAUGCUGGAAG\n______________|||_:||:|||||||\n______________UUC_UUAUGACCUUC\n3'-UUU...ACCGA___A___________GUUAC...GCG-5'\n_____________|_______________|\n_____________69______________53\n |
76 -- 82 |
54 -- 60 |
-16.6291 kcal/mol |
2.52602 kcal/mol |
2.71091 kcal/mol |
67 83@LB@ | |@LB@5'-GUG...CGACA A ACCUG...UUC-3'@LB@ AAG GAUGCUGGAAG@LB@ ||| :||:|||||||@LB@ UUC UUAUGACCUUC@LB@3'-UUU...ACCGA A GUUAC...GCG-5'@LB@ | |@LB@ 69 53@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -16.6291 kcal/mol@LB@Unfolding Energy - mRNA 2.52602 kcal/mol@LB@Unfolding Energy - sRNA 2.71091 kcal/mol@LB@@LB@Position - mRNA 68 -- 82@LB@Position - sRNA 54 -- 68@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 157 |
0.0194 |
0.4072 |
b2720 |
hycF |
-4.41 |
0.858528 |
100 -- 115 |
42 -- 59 |
formate hydrogenlyase complex iron-sulfur protein |
|
_____________99_________________116\n_____________|__________________|\n5'-CGA...GACCG___U_________C____GAAGA...CAG-3'\n______________UGG___CGAUGUG_GUAA\n______________|||___|:|||||_|:||\n______________ACC___GUUACAC_CGUU\n3'-UUU...UUAUG___UUC_______U____ACAGC...GCG-5'\n_____________|__________________|\n_____________60_________________41\n |
104 -- 110 |
47 -- 53 |
-13.6757 kcal/mol |
5.98921 kcal/mol |
3.27185 kcal/mol |
99 116@LB@ | |@LB@5'-CGA...GACCG U C GAAGA...CAG-3'@LB@ UGG CGAUGUG GUAA@LB@ ||| |:||||| |:||@LB@ ACC GUUACAC CGUU@LB@3'-UUU...UUAUG UUC U ACAGC...GCG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -4.41 kcal/mol@LB@Hybridization Energy -13.6757 kcal/mol@LB@Unfolding Energy - mRNA 5.98921 kcal/mol@LB@Unfolding Energy - sRNA 3.27185 kcal/mol@LB@@LB@Position - mRNA 100 -- 115@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 158 |
0.01943 |
0.4072 |
b1941 |
fliI |
-13.60 |
0.048038 |
205 -- 238 |
56 -- 85 |
flagellum-specific ATP synthase |
|
_____________204_________________________________239\n_____________|___________________________________|\n5'-CUG...AAUGA___C_______ACUC_________CCAC_______UAACU...GCG-3'\n______________CCA_GCGCCUG____GCUGGCUAA_____GCUGGA\n______________|||_||:||:|____|||||||||_____:|||||\n______________GGU_CGUGGGC____CGACCGAUU_____UGACCU\n______3'-UUUUC________________________CAUUA______UCGUU...GCG-5'\n_____________|___________________________________|\n_____________86__________________________________55\n |
221 -- 227 |
68 -- 74 |
-38.0474 kcal/mol |
10.8324 kcal/mol |
13.6134 kcal/mol |
204 239@LB@ | |@LB@5'-CUG...AAUGA C ACUC CCAC UAACU...GCG-3'@LB@ CCA GCGCCUG GCUGGCUAA GCUGGA@LB@ ||| ||:||:| ||||||||| :|||||@LB@ GGU CGUGGGC CGACCGAUU UGACCU@LB@ 3'-UUUUC CAUUA UCGUU...GCG-5'@LB@ | |@LB@ 86 55@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -38.0474 kcal/mol@LB@Unfolding Energy - mRNA 10.8324 kcal/mol@LB@Unfolding Energy - sRNA 13.6134 kcal/mol@LB@@LB@Position - mRNA 205 -- 238@LB@Position - sRNA 56 -- 85@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 159 |
0.02005 |
0.4072 |
b1725 |
yniA |
-13.71 |
0.046110 |
65 -- 84 |
43 -- 60 |
fructosamine kinase family protein |
|
_____________64___________________85\n_____________|____________________|\n5'-GAG...ACGAC_______G____GAAU____ACAGA...GGC-3'\n______________CUGGGAG_AAUG____AGCA\n______________||||:||_||||____||||\n______________GACCUUC_UUAC____UCGU\n3'-UUU...AUUAU_______G____AC______UACAG...GCG-5'\n_____________|____________________|\n_____________61___________________42\n |
65 -- 71 |
54 -- 60 |
-19.5513 kcal/mol |
2.54567 kcal/mol |
3.29917 kcal/mol |
64 85@LB@ | |@LB@5'-GAG...ACGAC G GAAU ACAGA...GGC-3'@LB@ CUGGGAG AAUG AGCA@LB@ ||||:|| |||| ||||@LB@ GACCUUC UUAC UCGU@LB@3'-UUU...AUUAU G AC UACAG...GCG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -13.71 kcal/mol@LB@Hybridization Energy -19.5513 kcal/mol@LB@Unfolding Energy - mRNA 2.54567 kcal/mol@LB@Unfolding Energy - sRNA 3.29917 kcal/mol@LB@@LB@Position - mRNA 65 -- 84@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 160 |
0.02006 |
0.4072 |
b1205 |
ychH |
-13.92 |
0.042333 |
252 -- 283 |
22 -- 60 |
DUF2583 family putative inner membrane protein |
|
_____________251_____________________________________284\n_____________|_______________________________________|\n5'-CAA...UGGGU____U____________G_________G__G____A___AAUCC...UAC-3'\n______________CUGG_GGUAAUG___GU___GUCG_GC__U_GGGU_UUC\n______________||||_:|:||||___|:___||||_||__|_:|||_:||\n______________GACC_UCGUUAC___CG___CAGC_CG__A_UCCA_GAG\n3'-UUU...AUUAU____U_______ACU__UUA____A__AA_G____A___GCGCU...GCG-5'\n_____________|_______________________________________|\n_____________61______________________________________21\n |
257 -- 263 |
49 -- 55 |
-28.0186 kcal/mol |
6.10632 kcal/mol |
7.98777 kcal/mol |
251 284@LB@ | |@LB@5'-CAA...UGGGU U G G G A AAUCC...UAC-3'@LB@ CUGG GGUAAUG GU GUCG GC U GGGU UUC@LB@ |||| :|:|||| |: |||| || | :||| :||@LB@ GACC UCGUUAC CG CAGC CG A UCCA GAG@LB@3'-UUU...AUUAU U ACU UUA A AA G A GCGCU...GCG-5'@LB@ | |@LB@ 61 21@LB@@LB@@LB@Energy -13.92 kcal/mol@LB@Hybridization Energy -28.0186 kcal/mol@LB@Unfolding Energy - mRNA 6.10632 kcal/mol@LB@Unfolding Energy - sRNA 7.98777 kcal/mol@LB@@LB@Position - mRNA 252 -- 283@LB@Position - sRNA 22 -- 60@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 49 -- 55@LB@ |
