| 51 |
0.00476 |
0.2905 |
b3607 |
cysE |
-15.05 |
0.027128 |
184 -- 209 |
34 -- 63 |
serine acetyltransferase |
|
_____________183_____________________________210\n_____________|_______________________________|\n5'-CGG...AUCUC__CG__U________________________GAAGA...CGA-3'\n______________AU__UG_GGAGUA_____AGCAAUGUCGUGU\n______________||__||_|:||:|_____||||||||||||:\n______________UA__AC_CUUCGU_____UCGUUACAGCACG\n3'-UUU...UUCAU__UG_________UACAC_____________AAAGU...GCG-5'\n_____________|_______________________________|\n_____________64______________________________33\n |
203 -- 209 |
34 -- 40 |
-26.8035 kcal/mol |
4.97985 kcal/mol |
6.76935 kcal/mol |
183 210@LB@ | |@LB@5'-CGG...AUCUC CG U GAAGA...CGA-3'@LB@ AU UG GGAGUA AGCAAUGUCGUGU@LB@ || || |:||:| ||||||||||||:@LB@ UA AC CUUCGU UCGUUACAGCACG@LB@3'-UUU...UUCAU UG UACAC AAAGU...GCG-5'@LB@ | |@LB@ 64 33@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -26.8035 kcal/mol@LB@Unfolding Energy - mRNA 4.97985 kcal/mol@LB@Unfolding Energy - sRNA 6.76935 kcal/mol@LB@@LB@Position - mRNA 184 -- 209@LB@Position - sRNA 34 -- 63@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 52 |
0.004779 |
0.2905 |
b4122 |
fumB |
-12.31 |
0.079331 |
182 -- 204 |
48 -- 68 |
anaerobic class I fumarate hydratase (fumarase B) |
|
_____________181_____________________205\n_____________|_______________________|\n5'-UCC...AUACA____UACAG_________U____CAAAC...ACU-3'\n______________GAGU_____GCUGGAAGC_AUGU\n______________:|||_____:||||||||_||||\n______________UUCA_____UGACCUUCG_UACA\n3'-UUU...ACCGA____UUA___________U____CUCGU...GCG-5'\n_____________|_______________________|\n_____________69______________________47\n |
193 -- 199 |
53 -- 59 |
-20.6346 kcal/mol |
5.29507 kcal/mol |
3.03052 kcal/mol |
181 205@LB@ | |@LB@5'-UCC...AUACA UACAG U CAAAC...ACU-3'@LB@ GAGU GCUGGAAGC AUGU@LB@ :||| :|||||||| ||||@LB@ UUCA UGACCUUCG UACA@LB@3'-UUU...ACCGA UUA U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -20.6346 kcal/mol@LB@Unfolding Energy - mRNA 5.29507 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 182 -- 204@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 53 |
0.004949 |
0.2905 |
b3353 |
yheT |
-17.66 |
0.009631 |
104 -- 164 |
43 -- 88 |
UPF0017 family putative hydrolase |
|
_____________103____________________________________________________________165\n_____________|______________________________________________________________|\n5'-GAG...ACAGC__________CAAAU____C____AA_____CGAAAUGGCAUG_________CCAG______GCUUG...UGC-3'\n______________AAGCCAGCGC_____CCGG_CUGG__GAGUG____________GCUGGAAGC_____GAGCA\n______________||||||||:|_____||||_||||__:|||:____________:||||||||_____|||||\n______________UUCGGUCGUG_____GGCC_GACC__UUCAU____________UGACCUUCG_____CUCGU\n_________3'-UU________________________GA_____UA___________________UUACA_____UACAG...GCG-5'\n_____________|______________________________________________________________|\n_____________89_____________________________________________________________42\n |
149 -- 155 |
53 -- 59 |
-55.8349 kcal/mol |
23.2651 kcal/mol |
14.9102 kcal/mol |
103 165@LB@ | |@LB@5'-GAG...ACAGC CAAAU C AA CGAAAUGGCAUG CCAG GCUUG...UGC-3'@LB@ AAGCCAGCGC CCGG CUGG GAGUG GCUGGAAGC GAGCA@LB@ ||||||||:| |||| |||| :|||: :|||||||| |||||@LB@ UUCGGUCGUG GGCC GACC UUCAU UGACCUUCG CUCGU@LB@ 3'-UU GA UA UUACA UACAG...GCG-5'@LB@ | |@LB@ 89 42@LB@@LB@@LB@Energy -17.66 kcal/mol@LB@Hybridization Energy -55.8349 kcal/mol@LB@Unfolding Energy - mRNA 23.2651 kcal/mol@LB@Unfolding Energy - sRNA 14.9102 kcal/mol@LB@@LB@Position - mRNA 104 -- 164@LB@Position - sRNA 43 -- 88@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 54 |
0.00511 |
0.2905 |
b0487 |
cueR |
-8.71 |
0.294876 |
81 -- 102 |
6 -- 25 |
copper-responsive regulon transcriptional regulator |
|
_____________80_____________________103\n_____________|______________________|\n5'-GUU...ACAUC________C_CA__A_______UAUUA...AAA-3'\n______________UCUCUGUG_G__GU_CUUCCUG\n______________||||:|:|_|__||_|||||||\n______________AGAGGCGC_C__CA_GAAGGAC\n3'-UUU...GUCCA________U_C___________UAGCG-5'\n_____________|______________________|\n_____________26_____________________5\n |
96 -- 102 |
6 -- 12 |
-22.4921 kcal/mol |
6.07455 kcal/mol |
7.70509 kcal/mol |
80 103@LB@ | |@LB@5'-GUU...ACAUC C CA A UAUUA...AAA-3'@LB@ UCUCUGUG G GU CUUCCUG@LB@ ||||:|:| | || |||||||@LB@ AGAGGCGC C CA GAAGGAC@LB@3'-UUU...GUCCA U C UAGCG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -22.4921 kcal/mol@LB@Unfolding Energy - mRNA 6.07455 kcal/mol@LB@Unfolding Energy - sRNA 7.70509 kcal/mol@LB@@LB@Position - mRNA 81 -- 102@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 55 |
0.005153 |
0.2905 |
b2727 |
hypB |
-14.04 |
0.040392 |
194 -- 204 |
39 -- 49 |
GTP hydrolase involved in nickel liganding into hydrogenases |
|
_____________193_________205\n_____________|___________|\n5'-GCC...CAGGA___________GUACA...CGG-3'\n______________GUGAGCGAUGU\n______________||||||:||||\n______________CACUCGUUACA\n3'-UUU...CGUUA___________GCACG...GCG-5'\n_____________|___________|\n_____________50__________38\n |
198 -- 204 |
39 -- 45 |
-18.0568 kcal/mol |
2.85856 kcal/mol |
1.15413 kcal/mol |
193 205@LB@ | |@LB@5'-GCC...CAGGA GUACA...CGG-3'@LB@ GUGAGCGAUGU@LB@ ||||||:||||@LB@ CACUCGUUACA@LB@3'-UUU...CGUUA GCACG...GCG-5'@LB@ | |@LB@ 50 38@LB@@LB@@LB@Energy -14.04 kcal/mol@LB@Hybridization Energy -18.0568 kcal/mol@LB@Unfolding Energy - mRNA 2.85856 kcal/mol@LB@Unfolding Energy - sRNA 1.15413 kcal/mol@LB@@LB@Position - mRNA 194 -- 204@LB@Position - sRNA 39 -- 49@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 56 |
0.005166 |
0.2905 |
b0152 |
fhuD |
-11.53 |
0.106927 |
159 -- 195 |
38 -- 86 |
iron(3+)-hydroxamate import ABC transporter periplasmic binding protein |
|
_____________158________________________________________________196\n_____________|__________________________________________________|\n5'-ACG...AUUUU_____________G___GCU_______________CC_______UU____UAUUG...UUG-3'\n______________GCC_GCAUCCGGC_GGU_______________GCA__UGUGAGU__UGUU\n______________|||_|||:|||||_||:_______________|||__||||||:__|||:\n______________CGG_CGUGGGCCG_CCG_______________CGU__ACACUCG__ACAG\n_______3'-UUUU___U_________A___AUUCAUUAUGACCUU___U________UU____CACGA...GCG-5'\n_____________|__________________________________________________|\n_____________87_________________________________________________37\n |
183 -- 189 |
44 -- 50 |
-42.47 kcal/mol |
16.0325 kcal/mol |
14.9106 kcal/mol |
158 196@LB@ | |@LB@5'-ACG...AUUUU G GCU CC UU UAUUG...UUG-3'@LB@ GCC GCAUCCGGC GGU GCA UGUGAGU UGUU@LB@ ||| |||:||||| ||: ||| ||||||: |||:@LB@ CGG CGUGGGCCG CCG CGU ACACUCG ACAG@LB@ 3'-UUUU U A AUUCAUUAUGACCUU U UU CACGA...GCG-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -11.53 kcal/mol@LB@Hybridization Energy -42.47 kcal/mol@LB@Unfolding Energy - mRNA 16.0325 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 159 -- 195@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 57 |
0.005292 |
0.2905 |
b0077 |
ilvI |
-12.73 |
0.067491 |
188 -- 240 |
1 -- 67 |
acetolactate synthase 3 large subunit |
|
_____________187__________________________________________________________________241\n_____________|____________________________________________________________________|\n5'-AAA...CAAAC___________C____C_________________________AG_____A__U____G__________UUAUC...UUU-3'\n______________AGUGA____GG_AGGC_AUG_GAG__AUGUUGU_CU____GG____CCG_GA_GGUC_UCC_GAUCGC\n______________|||:|____||_|:||_|||_|||__||||:||_||____||____|||_||_||||_|||_||||||\n______________UCAUU____CC_UUCG_UAC_CUC__UACAGCA_GA____CC____GGC_CU_CCAG_AGG_CUAGCG\n3'-UUU...CCGAU_____AUGA_______U___A___GU_______C__AAGU__AAGA___G__C____A___A______-5'\n_____________|___________________________________________________________________|\n_____________68__________________________________________________________________1\n |
207 -- 213 |
36 -- 42 |
-47.8903 kcal/mol |
21.0378 kcal/mol |
14.1245 kcal/mol |
187 241@LB@ | |@LB@5'-AAA...CAAAC C C AG A U G UUAUC...UUU-3'@LB@ AGUGA GG AGGC AUG GAG AUGUUGU CU GG CCG GA GGUC UCC GAUCGC@LB@ |||:| || |:|| ||| ||| ||||:|| || || ||| || |||| ||| ||||||@LB@ UCAUU CC UUCG UAC CUC UACAGCA GA CC GGC CU CCAG AGG CUAGCG@LB@3'-UUU...CCGAU AUGA U A GU C AAGU AAGA G C A A -5'@LB@ | |@LB@ 68 1@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -47.8903 kcal/mol@LB@Unfolding Energy - mRNA 21.0378 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 188 -- 240@LB@Position - sRNA 1 -- 67@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 58 |
0.00551 |
0.2905 |
b0156 |
erpA |
-13.52 |
0.049632 |
189 -- 214 |
36 -- 60 |
iron-sulfur cluster insertion protein |
|
_____________188_________________________215\n_____________|___________________________|\n5'-UAG...GUCGU__________AAUA_________A___AGCAC...UAC-3'\n______________UUGG_AGCAA____UGAGUGAUG_CGU\n______________:|||_|||||____||||::|||_|||\n______________GACC_UCGUU____ACUCGUUAC_GCA\n3'-UUU...AUUAU____U_____AC___________A___CGAAA...GCG-5'\n_____________|___________________________|\n_____________61__________________________35\n |
204 -- 210 |
40 -- 46 |
-21.0837 kcal/mol |
4.26473 kcal/mol |
3.30077 kcal/mol |
188 215@LB@ | |@LB@5'-UAG...GUCGU AAUA A AGCAC...UAC-3'@LB@ UUGG AGCAA UGAGUGAUG CGU@LB@ :||| ||||| ||||::||| |||@LB@ GACC UCGUU ACUCGUUAC GCA@LB@3'-UUU...AUUAU U AC A CGAAA...GCG-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -13.52 kcal/mol@LB@Hybridization Energy -21.0837 kcal/mol@LB@Unfolding Energy - mRNA 4.26473 kcal/mol@LB@Unfolding Energy - sRNA 3.30077 kcal/mol@LB@@LB@Position - mRNA 189 -- 214@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 59 |
0.005518 |
0.2905 |
b3663 |
yicN |
-20.80 |
0.002740 |
224 -- 256 |
26 -- 61 |
DUF1198 family protein |
|
_____________223__________________________________257\n_____________|____________________________________|\n5'-CUU...GCCAC_____C________UU__G_________________GCUGA...AUC-3'\n______________GCUGG_GGUAGUGU__GU___GUUG_GUUUUCGGGU\n______________:||||_:|:|:|||__|:___||:|_|:||||:|||\n______________UGACC_UCGUUACA__CG___CAGC_CGAAAGUCCA\n3'-UUU...CAUUA_____U________CU__UUA____A__________AGAGG...GCG-5'\n_____________|____________________________________|\n_____________62___________________________________25\n |
250 -- 256 |
26 -- 32 |
-36.0496 kcal/mol |
7.2648 kcal/mol |
7.98122 kcal/mol |
223 257@LB@ | |@LB@5'-CUU...GCCAC C UU G GCUGA...AUC-3'@LB@ GCUGG GGUAGUGU GU GUUG GUUUUCGGGU@LB@ :|||| :|:|:||| |: ||:| |:||||:|||@LB@ UGACC UCGUUACA CG CAGC CGAAAGUCCA@LB@3'-UUU...CAUUA U CU UUA A AGAGG...GCG-5'@LB@ | |@LB@ 62 25@LB@@LB@@LB@Energy -20.80 kcal/mol@LB@Hybridization Energy -36.0496 kcal/mol@LB@Unfolding Energy - mRNA 7.2648 kcal/mol@LB@Unfolding Energy - sRNA 7.98122 kcal/mol@LB@@LB@Position - mRNA 224 -- 256@LB@Position - sRNA 26 -- 61@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 60 |
0.005592 |
0.2905 |
b3577 |
yiaM |
-14.71 |
0.031138 |
209 -- 232 |
41 -- 64 |
2 3-diketo-L-gulonate TRAP transporter small permease protein |
|
_____________208______________________233\n_____________|________________________|\n5'-UUC...AAAAA______C________ACU______UAAUC...GCA-3'\n______________AAUACU_GAAGCAAU___GGCGAU\n______________||||||_||||||||___:||:||\n______________UUAUGA_CUUCGUUA___UCGUUA\n3'-UUU...AUUCA______C________CAC______CAGCA...GCG-5'\n_____________|________________________|\n_____________65_______________________40\n |
217 -- 223 |
50 -- 56 |
-21.6131 kcal/mol |
3.60615 kcal/mol |
3.30185 kcal/mol |
208 233@LB@ | |@LB@5'-UUC...AAAAA C ACU UAAUC...GCA-3'@LB@ AAUACU GAAGCAAU GGCGAU@LB@ |||||| |||||||| :||:||@LB@ UUAUGA CUUCGUUA UCGUUA@LB@3'-UUU...AUUCA C CAC CAGCA...GCG-5'@LB@ | |@LB@ 65 40@LB@@LB@@LB@Energy -14.71 kcal/mol@LB@Hybridization Energy -21.6131 kcal/mol@LB@Unfolding Energy - mRNA 3.60615 kcal/mol@LB@Unfolding Energy - sRNA 3.30185 kcal/mol@LB@@LB@Position - mRNA 209 -- 232@LB@Position - sRNA 41 -- 64@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 50 -- 56@LB@ |
