| 11 |
0.000669 |
0.2043 |
b4154 |
frdA |
-13.85 |
0.043591 |
184 -- 204 |
34 -- 53 |
anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
|
_____________183___________________205\n_____________|_____________________|\n5'-UAA...AAAAA____CUG___G__________AAACC...UCG-3'\n______________CAAU___GAG_AAUGUCGUGC\n______________||||___|||_||||||||||\n______________GUUA___CUC_UUACAGCACG\n3'-UUU...CCUUC____CA____G__________AAAGU...GCG-5'\n_____________|_____________________|\n_____________54____________________33\n |
198 -- 204 |
34 -- 40 |
-24.005 kcal/mol |
3.86794 kcal/mol |
6.28724 kcal/mol |
183 205@LB@ | |@LB@5'-UAA...AAAAA CUG G AAACC...UCG-3'@LB@ CAAU GAG AAUGUCGUGC@LB@ |||| ||| ||||||||||@LB@ GUUA CUC UUACAGCACG@LB@3'-UUU...CCUUC CA G AAAGU...GCG-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -24.005 kcal/mol@LB@Unfolding Energy - mRNA 3.86794 kcal/mol@LB@Unfolding Energy - sRNA 6.28724 kcal/mol@LB@@LB@Position - mRNA 184 -- 204@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 12 |
0.0007887 |
0.2153 |
b3981 |
secE |
-14.50 |
0.033700 |
225 -- 262 |
36 -- 90 |
preprotein translocase membrane subunit |
|
_____________224_____________________________________________________263\n_____________|_______________________________________________________|\n5'-UAA...CUCAA______G___________________________________A____________UGUGG...ACU-3'\n______________GGAAGC_GGCGC__GGC_____________CUGGAAGCGAUG__AGUGG_GUCGU\n______________::||||_:||:|__|||_____________||||||||:|||__||:::_|||||\n______________UUUUCG_UCGUG__CCG_____________GACCUUCGUUAC__UCGUU_CAGCA\n___________3'-______G_____GG___ACCGAUUCAUUAU____________AC_____A_____CGAAA...GCG-5'\n______________|______________________________________________________|\n______________90_____________________________________________________35\n |
245 -- 251 |
49 -- 55 |
-44.4001 kcal/mol |
14.9847 kcal/mol |
14.9108 kcal/mol |
224 263@LB@ | |@LB@5'-UAA...CUCAA G A UGUGG...ACU-3'@LB@ GGAAGC GGCGC GGC CUGGAAGCGAUG AGUGG GUCGU@LB@ ::|||| :||:| ||| ||||||||:||| ||::: |||||@LB@ UUUUCG UCGUG CCG GACCUUCGUUAC UCGUU CAGCA@LB@ 3'- G GG ACCGAUUCAUUAU AC A CGAAA...GCG-5'@LB@ | |@LB@ 90 35@LB@@LB@@LB@Energy -14.50 kcal/mol@LB@Hybridization Energy -44.4001 kcal/mol@LB@Unfolding Energy - mRNA 14.9847 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 225 -- 262@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 13 |
0.000833 |
0.2153 |
b1531 |
marA |
-8.74 |
0.292618 |
190 -- 205 |
38 -- 57 |
multiple antibiotic resistance transcriptional regulator |
|
_____________189__________________206\n_____________|____________________|\n5'-AAG...AAAAA____________________CAGAC...AGC-3'\n______________GAGGUA___UGA_CGAUGUC\n______________||:|:|___|||_|:|||||\n______________CUUCGU___ACU_GUUACAG\n3'-UUU...AUGAC______UAC___C_______CACGA...GCG-5'\n_____________|____________________|\n_____________58___________________37\n |
199 -- 205 |
38 -- 44 |
-15.3925 kcal/mol |
3.44101 kcal/mol |
3.2161 kcal/mol |
189 206@LB@ | |@LB@5'-AAG...AAAAA CAGAC...AGC-3'@LB@ GAGGUA UGA CGAUGUC@LB@ ||:|:| ||| |:|||||@LB@ CUUCGU ACU GUUACAG@LB@3'-UUU...AUGAC UAC C CACGA...GCG-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -15.3925 kcal/mol@LB@Unfolding Energy - mRNA 3.44101 kcal/mol@LB@Unfolding Energy - sRNA 3.2161 kcal/mol@LB@@LB@Position - mRNA 190 -- 205@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 14 |
0.0009144 |
0.2195 |
b0181 |
lpxA |
-19.56 |
0.004514 |
124 -- 202 |
1 -- 90 |
UDP-N-acetylglucosamine acetyltransferase |
|
_____________123_____________________________________________________________________________________________203\n_____________|_______________________________________________________________________________________________|\n5'-CGG...UUUUA_____G_U_________CGA____A___________C_______C_________________CG___________G_______________A___GAUUG...GAC-3'\n______________AAGGG_U_GC_UCUGGU___UGGU_AAGUAGU_UUG_GAAGCAA___GA_UGAUGU_GUGCU__UAG_____CCG_GAGG_____CCUGAU_CGU\n______________||::|_:_||_:|:||:___|||:_|||||:|_:||_|||||||___||_::||||_|||||__:||_____|||_||||_____||||||_||:\n______________UUUUC_G_CG_GGGCCG___ACCG_UUCAUUA_GAC_CUUCGUU___CU_GUUACA_CACGA__GUC_____GGC_CUCC_____GGACUA_GCG\n___________3'-_____G_U__U_____________A_______U___________ACA__C______G_____AA___CAAGA___G____CAGAA__________-5'\n______________|_____________________________________________________________________________________________|\n______________90____________________________________________________________________________________________1\n |
159 -- 165 |
51 -- 57 |
-68.8911 kcal/mol |
23.6052 kcal/mol |
25.7298 kcal/mol |
123 203@LB@ | |@LB@5'-CGG...UUUUA G U CGA A C C CG G A GAUUG...GAC-3'@LB@ AAGGG U GC UCUGGU UGGU AAGUAGU UUG GAAGCAA GA UGAUGU GUGCU UAG CCG GAGG CCUGAU CGU@LB@ ||::| : || :|:||: |||: |||||:| :|| ||||||| || ::|||| ||||| :|| ||| |||| |||||| ||:@LB@ UUUUC G CG GGGCCG ACCG UUCAUUA GAC CUUCGUU CU GUUACA CACGA GUC GGC CUCC GGACUA GCG@LB@ 3'- G U U A U ACA C G AA CAAGA G CAGAA -5'@LB@ | |@LB@ 90 1@LB@@LB@@LB@Energy -19.56 kcal/mol@LB@Hybridization Energy -68.8911 kcal/mol@LB@Unfolding Energy - mRNA 23.6052 kcal/mol@LB@Unfolding Energy - sRNA 25.7298 kcal/mol@LB@@LB@Position - mRNA 124 -- 202@LB@Position - sRNA 1 -- 90@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 15 |
0.001024 |
0.2294 |
b2822 |
recC |
-16.38 |
0.016046 |
234 -- 264 |
37 -- 63 |
exonuclease V (RecBCD complex) gamma chain |
|
_____________233______________________________265\n_____________|________________________________|\n5'-AGU...UGGAC___________GUU_________UUAU_____AACGC...AGA-3'\n______________GUGCUGGAAGC___GAUG_GAGU____UGUCG\n______________:|:||||||||___:|||_|||:____|||||\n______________UAUGACCUUCG___UUAC_CUCG____ACAGC\n3'-UUU...UUCAU__________________A____UU_______ACGAA...GCG-5'\n_____________|________________________________|\n_____________64_______________________________36\n |
238 -- 244 |
53 -- 59 |
-30.8262 kcal/mol |
11.1454 kcal/mol |
3.30267 kcal/mol |
233 265@LB@ | |@LB@5'-AGU...UGGAC GUU UUAU AACGC...AGA-3'@LB@ GUGCUGGAAGC GAUG GAGU UGUCG@LB@ :|:|||||||| :||| |||: |||||@LB@ UAUGACCUUCG UUAC CUCG ACAGC@LB@3'-UUU...UUCAU A UU ACGAA...GCG-5'@LB@ | |@LB@ 64 36@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -30.8262 kcal/mol@LB@Unfolding Energy - mRNA 11.1454 kcal/mol@LB@Unfolding Energy - sRNA 3.30267 kcal/mol@LB@@LB@Position - mRNA 234 -- 264@LB@Position - sRNA 37 -- 63@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 16 |
0.00116 |
0.2406 |
b0221 |
fadE |
-14.73 |
0.030789 |
87 -- 104 |
36 -- 53 |
acyl coenzyme A dehydrogenase |
|
_____________86_________________105\n_____________|__________________|\n5'-GUG...AGCAA__________UU______AAUUA...GGA-3'\n______________CAAUGUGAGC__UGUUGU\n______________||||||||||__|||:||\n______________GUUACACUCG__ACAGCA\n3'-UUU...CCUUC__________UU______CGAAA...GCG-5'\n_____________|__________________|\n_____________54_________________35\n |
90 -- 96 |
44 -- 50 |
-23.2381 kcal/mol |
5.2956 kcal/mol |
3.20883 kcal/mol |
86 105@LB@ | |@LB@5'-GUG...AGCAA UU AAUUA...GGA-3'@LB@ CAAUGUGAGC UGUUGU@LB@ |||||||||| |||:||@LB@ GUUACACUCG ACAGCA@LB@3'-UUU...CCUUC UU CGAAA...GCG-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.2381 kcal/mol@LB@Unfolding Energy - mRNA 5.2956 kcal/mol@LB@Unfolding Energy - sRNA 3.20883 kcal/mol@LB@@LB@Position - mRNA 87 -- 104@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 17 |
0.001256 |
0.2406 |
b2496 |
hda |
-13.91 |
0.042623 |
63 -- 79 |
52 -- 68 |
ATPase regulatory factor involved in DnaA inactivation |
|
_____________62________________80\n_____________|_________________|\n5'-GAC...UGAAG_____________C___GAAGA...CGC-3'\n______________AAGUGGUGCUGGA_GCA\n______________||||::|:|||||_|||\n______________UUCAUUAUGACCU_CGU\n3'-UUU...ACCGA_____________U___UACAC...GCG-5'\n_____________|_________________|\n_____________69________________51\n |
69 -- 75 |
56 -- 62 |
-21.6495 kcal/mol |
4.84804 kcal/mol |
2.8943 kcal/mol |
62 80@LB@ | |@LB@5'-GAC...UGAAG C GAAGA...CGC-3'@LB@ AAGUGGUGCUGGA GCA@LB@ ||||::|:||||| |||@LB@ UUCAUUAUGACCU CGU@LB@3'-UUU...ACCGA U UACAC...GCG-5'@LB@ | |@LB@ 69 51@LB@@LB@@LB@Energy -13.91 kcal/mol@LB@Hybridization Energy -21.6495 kcal/mol@LB@Unfolding Energy - mRNA 4.84804 kcal/mol@LB@Unfolding Energy - sRNA 2.8943 kcal/mol@LB@@LB@Position - mRNA 63 -- 79@LB@Position - sRNA 52 -- 68@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 18 |
0.001289 |
0.2406 |
b3930 |
menA |
-10.08 |
0.182848 |
73 -- 82 |
42 -- 51 |
1 4-dihydroxy-2-naphthoate octaprenyltransferase |
|
_____________72_________83\n_____________|__________|\n5'-AGC...AGAUU__________ACAUC...CGC-3'\n______________AUGUGAGCAA\n______________||||||||||\n______________UACACUCGUU\n3'-UUU...UUCGU__________ACAGC...GCG-5'\n_____________|__________|\n_____________52_________41\n |
76 -- 82 |
42 -- 48 |
-14.1762 kcal/mol |
2.92742 kcal/mol |
1.16834 kcal/mol |
72 83@LB@ | |@LB@5'-AGC...AGAUU ACAUC...CGC-3'@LB@ AUGUGAGCAA@LB@ ||||||||||@LB@ UACACUCGUU@LB@3'-UUU...UUCGU ACAGC...GCG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -14.1762 kcal/mol@LB@Unfolding Energy - mRNA 2.92742 kcal/mol@LB@Unfolding Energy - sRNA 1.16834 kcal/mol@LB@@LB@Position - mRNA 73 -- 82@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 19 |
0.001375 |
0.2431 |
b0722 |
sdhD |
-16.32 |
0.016452 |
168 -- 195 |
12 -- 41 |
succinate dehydrogenase membrane subunit binds cytochrome b556 |
|
_____________167_____________________________196\n_____________|_______________________________|\n5'-UCC...AUUAC_____________C_____________A___CUCGU...UGG-3'\n______________UGUCGUGCUUUCA__UUCU_CGC_AGG_GUC\n______________|||||||||||||__||||_|||_|||_|||\n______________ACAGCACGAAAGU__AAGA_GCG_UCC_CAG\n3'-UUU...UCGUU_____________CC____G___C_______AAGGA...GCG-5'\n_____________|_______________________________|\n_____________42______________________________11\n |
174 -- 180 |
29 -- 35 |
-35.0246 kcal/mol |
7.60237 kcal/mol |
11.1071 kcal/mol |
167 196@LB@ | |@LB@5'-UCC...AUUAC C A CUCGU...UGG-3'@LB@ UGUCGUGCUUUCA UUCU CGC AGG GUC@LB@ ||||||||||||| |||| ||| ||| |||@LB@ ACAGCACGAAAGU AAGA GCG UCC CAG@LB@3'-UUU...UCGUU CC G C AAGGA...GCG-5'@LB@ | |@LB@ 42 11@LB@@LB@@LB@Energy -16.32 kcal/mol@LB@Hybridization Energy -35.0246 kcal/mol@LB@Unfolding Energy - mRNA 7.60237 kcal/mol@LB@Unfolding Energy - sRNA 11.1071 kcal/mol@LB@@LB@Position - mRNA 168 -- 195@LB@Position - sRNA 12 -- 41@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 20 |
0.001583 |
0.2659 |
b4547 |
ypfN |
-17.32 |
0.011014 |
197 -- 242 |
38 -- 88 |
putative membrane protein UPF0370 family |
|
_____________196_________________________________________________243\n_____________|___________________________________________________|\n5'-UGA...GAAAU____AU_G______________A__U__G____UUCUG_____U_______UUUUU...AGA-3'\n______________AAGC__G_A_CUGGCUGGCUAA_UA_UG_UGGA______GUGA____UGUC\n______________||||__|_|_|:||||||||||_||_|:_||||______||||____||||\n______________UUCG__C_U_GGCCGACCGAUU_AU_AU_ACCU______CACU____ACAG\n_________3'-UU____GU_G_G____________C__U__G____UCGUUA____CGUU____CACGA...GCG-5'\n_____________|___________________________________________________|\n_____________89__________________________________________________37\n |
211 -- 217 |
67 -- 73 |
-42.3158 kcal/mol |
10.0822 kcal/mol |
14.9106 kcal/mol |
196 243@LB@ | |@LB@5'-UGA...GAAAU AU G A U G UUCUG U UUUUU...AGA-3'@LB@ AAGC G A CUGGCUGGCUAA UA UG UGGA GUGA UGUC@LB@ |||| | | |:|||||||||| || |: |||| |||| ||||@LB@ UUCG C U GGCCGACCGAUU AU AU ACCU CACU ACAG@LB@ 3'-UU GU G G C U G UCGUUA CGUU CACGA...GCG-5'@LB@ | |@LB@ 89 37@LB@@LB@@LB@Energy -17.32 kcal/mol@LB@Hybridization Energy -42.3158 kcal/mol@LB@Unfolding Energy - mRNA 10.0822 kcal/mol@LB@Unfolding Energy - sRNA 14.9106 kcal/mol@LB@@LB@Position - mRNA 197 -- 242@LB@Position - sRNA 38 -- 88@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 67 -- 73@LB@ |
