| 31 |
0.002952 |
0.2776 |
b3052 |
hldE |
-18.29 |
0.007494 |
235 -- 261 |
44 -- 68 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________234_________________________262\n_____________|___________________________|\n5'-GCG...UGCAG________G___UU__________U__UGGAU...CGC-3'\n______________GAGUGAUG_UGG__GGUGAUGUGA_GC\n______________:|||:||:_|||__:|::||||||_||\n______________UUCAUUAU_ACC__UCGUUACACU_CG\n3'-UUU...ACCGA________G___U______________UUACA...GCG-5'\n_____________|___________________________|\n_____________69__________________________43\n |
252 -- 258 |
46 -- 52 |
-27.5603 kcal/mol |
5.96824 kcal/mol |
3.30414 kcal/mol |
234 262@LB@ | |@LB@5'-GCG...UGCAG G UU U UGGAU...CGC-3'@LB@ GAGUGAUG UGG GGUGAUGUGA GC@LB@ :|||:||: ||| :|::|||||| ||@LB@ UUCAUUAU ACC UCGUUACACU CG@LB@3'-UUU...ACCGA G U UUACA...GCG-5'@LB@ | |@LB@ 69 43@LB@@LB@@LB@Energy -18.29 kcal/mol@LB@Hybridization Energy -27.5603 kcal/mol@LB@Unfolding Energy - mRNA 5.96824 kcal/mol@LB@Unfolding Energy - sRNA 3.30414 kcal/mol@LB@@LB@Position - mRNA 235 -- 261@LB@Position - sRNA 44 -- 68@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 32 |
0.002983 |
0.2776 |
b3032 |
cpdA |
-14.85 |
0.029357 |
133 -- 158 |
40 -- 64 |
3' 5' cAMP phosphodiesterase |
|
_____________132_________________________159\n_____________|___________________________|\n5'-ACG...GUUGC_______UUU____C____________GCGAU...UGU-3'\n______________GAUACUG___AGCA_AUG_GAGCGAUG\n______________:||||||___||||_|||_||||:|||\n______________UUAUGAC___UCGU_UAC_CUCGUUAC\n3'-UUU...AUUCA_______CU_________A________AGCAC...GCG-5'\n_____________|___________________________|\n_____________65__________________________39\n |
152 -- 158 |
40 -- 46 |
-24.327 kcal/mol |
6.1707 kcal/mol |
3.30198 kcal/mol |
132 159@LB@ | |@LB@5'-ACG...GUUGC UUU C GCGAU...UGU-3'@LB@ GAUACUG AGCA AUG GAGCGAUG@LB@ :|||||| |||| ||| ||||:|||@LB@ UUAUGAC UCGU UAC CUCGUUAC@LB@3'-UUU...AUUCA CU A AGCAC...GCG-5'@LB@ | |@LB@ 65 39@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -24.327 kcal/mol@LB@Unfolding Energy - mRNA 6.1707 kcal/mol@LB@Unfolding Energy - sRNA 3.30198 kcal/mol@LB@@LB@Position - mRNA 133 -- 158@LB@Position - sRNA 40 -- 64@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 33 |
0.003005 |
0.2776 |
b0698 |
kdpA |
-12.81 |
0.065301 |
205 -- 229 |
1 -- 24 |
potassium translocating ATPase subunit A |
|
_____________204_______________________230\n_____________|_________________________|\n5'-GCU...GAUGG__G___A____U___UA________CACGU...ACA-3'\n______________CU_CGC_AGGG_UCU__CUGAUCGC\n______________||_|||_||||_|||__||||||||\n______________GA_GCG_UCCC_AGA__GACUAGCG\n3'-UUU...UCCAA__G___C________AG________-5'\n_____________|________________________|\n_____________25_______________________1\n |
223 -- 229 |
1 -- 7 |
-32.8008 kcal/mol |
12.2882 kcal/mol |
7.69932 kcal/mol |
204 230@LB@ | |@LB@5'-GCU...GAUGG G A U UA CACGU...ACA-3'@LB@ CU CGC AGGG UCU CUGAUCGC@LB@ || ||| |||| ||| ||||||||@LB@ GA GCG UCCC AGA GACUAGCG@LB@3'-UUU...UCCAA G C AG -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -12.81 kcal/mol@LB@Hybridization Energy -32.8008 kcal/mol@LB@Unfolding Energy - mRNA 12.2882 kcal/mol@LB@Unfolding Energy - sRNA 7.69932 kcal/mol@LB@@LB@Position - mRNA 205 -- 229@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 34 |
0.003032 |
0.2776 |
b3928 |
zapB |
-12.77 |
0.066459 |
230 -- 240 |
51 -- 61 |
FtsZ stabilizer septal ring assembly factor cell division stimulator |
|
_____________229_________241\n_____________|___________|\n5'-UUU...GAGAA___________AAGUA...AAG-3'\n______________ACUGGAAGCAA\n______________|||||||||||\n______________UGACCUUCGUU\n3'-UUU...CAUUA___________ACACU...GCG-5'\n_____________|___________|\n_____________62__________50\n |
234 -- 240 |
51 -- 57 |
-17.959 kcal/mol |
2.30162 kcal/mol |
2.8896 kcal/mol |
229 241@LB@ | |@LB@5'-UUU...GAGAA AAGUA...AAG-3'@LB@ ACUGGAAGCAA@LB@ |||||||||||@LB@ UGACCUUCGUU@LB@3'-UUU...CAUUA ACACU...GCG-5'@LB@ | |@LB@ 62 50@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -17.959 kcal/mol@LB@Unfolding Energy - mRNA 2.30162 kcal/mol@LB@Unfolding Energy - sRNA 2.8896 kcal/mol@LB@@LB@Position - mRNA 230 -- 240@LB@Position - sRNA 51 -- 61@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 35 |
0.003076 |
0.2776 |
b1678 |
ldtE |
-14.38 |
0.035403 |
2 -- 13 |
49 -- 60 |
murein L D-transpeptidase |
|
_____________1____________14\n_____________|____________|\n__________5'-U____________AUUCG...GCC-3'\n______________CUGGAAGCGAUG\n______________||||||||:|||\n______________GACCUUCGUUAC\n3'-UUU...AUUAU____________ACUCG...GCG-5'\n_____________|____________|\n_____________61___________48\n |
7 -- 13 |
49 -- 55 |
-19.7187 kcal/mol |
2.33169 kcal/mol |
3.00762 kcal/mol |
1 14@LB@ | |@LB@ 5'-U AUUCG...GCC-3'@LB@ CUGGAAGCGAUG@LB@ ||||||||:|||@LB@ GACCUUCGUUAC@LB@3'-UUU...AUUAU ACUCG...GCG-5'@LB@ | |@LB@ 61 48@LB@@LB@@LB@Energy -14.38 kcal/mol@LB@Hybridization Energy -19.7187 kcal/mol@LB@Unfolding Energy - mRNA 2.33169 kcal/mol@LB@Unfolding Energy - sRNA 3.00762 kcal/mol@LB@@LB@Position - mRNA 2 -- 13@LB@Position - sRNA 49 -- 60@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 36 |
0.00312 |
0.2776 |
b1418 |
cybB |
-18.82 |
0.006053 |
229 -- 299 |
21 -- 85 |
cytochrome b561 |
|
_____________228__________________________________________________________________________300\n_____________|____________________________________________________________________________|\n5'-AAC...ACAAA_______UCA_________CUUUU________UUAUC____C__AUU_C______GA_________U__U______C-3'\n______________UCAGCAU___CUGGCUGGU_______UACUGG_____GCAG_GU___G_GCAAUG__GU___UUCG_GG_UUCUUC\n______________:|||||:___|:||||||:_______||||||_____|||:_||___|_||||||__||___|||:_||_||||:|\n______________GGUCGUG___GGCCGACCG_______AUGACC_____CGUU_CA___C_CGUUAC__CA___AAGU_CC_AAGAGG\n______3'-UUUUC___________________AUUCAUU______UU_______A______U______AG__CGA______________CGCUC...GCG-5'\n_____________|____________________________________________________________________________|\n_____________86___________________________________________________________________________20\n |
241 -- 247 |
70 -- 76 |
-54.3818 kcal/mol |
15.9593 kcal/mol |
19.6 kcal/mol |
228 300@LB@ | |@LB@5'-AAC...ACAAA UCA CUUUU UUAUC C AUU C GA U U C-3'@LB@ UCAGCAU CUGGCUGGU UACUGG GCAG GU G GCAAUG GU UUCG GG UUCUUC@LB@ :|||||: |:||||||: |||||| |||: || | |||||| || |||: || ||||:|@LB@ GGUCGUG GGCCGACCG AUGACC CGUU CA C CGUUAC CA AAGU CC AAGAGG@LB@ 3'-UUUUC AUUCAUU UU A U AG CGA CGCUC...GCG-5'@LB@ | |@LB@ 86 20@LB@@LB@@LB@Energy -18.82 kcal/mol@LB@Hybridization Energy -54.3818 kcal/mol@LB@Unfolding Energy - mRNA 15.9593 kcal/mol@LB@Unfolding Energy - sRNA 19.6 kcal/mol@LB@@LB@Position - mRNA 229 -- 299@LB@Position - sRNA 21 -- 85@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 37 |
0.003144 |
0.2776 |
b3743 |
asnC |
-18.99 |
0.005660 |
240 -- 261 |
40 -- 60 |
transcriptional activator of asnA; autorepressor |
|
_____________239____________________262\n_____________|______________________|\n5'-AUU...GCAUC_________UUAA_________CGCGC...GCG-3'\n______________CUGGAAGCA____UGGGCAAUG\n______________|||||||||____||:||||||\n______________GACCUUCGU____ACUCGUUAC\n3'-UUU...AUUAU_________UAC__________AGCAC...GCG-5'\n_____________|______________________|\n_____________61_____________________39\n |
255 -- 261 |
40 -- 46 |
-27.3577 kcal/mol |
5.06736 kcal/mol |
3.29985 kcal/mol |
239 262@LB@ | |@LB@5'-AUU...GCAUC UUAA CGCGC...GCG-3'@LB@ CUGGAAGCA UGGGCAAUG@LB@ ||||||||| ||:||||||@LB@ GACCUUCGU ACUCGUUAC@LB@3'-UUU...AUUAU UAC AGCAC...GCG-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -18.99 kcal/mol@LB@Hybridization Energy -27.3577 kcal/mol@LB@Unfolding Energy - mRNA 5.06736 kcal/mol@LB@Unfolding Energy - sRNA 3.29985 kcal/mol@LB@@LB@Position - mRNA 240 -- 261@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 38 |
0.003171 |
0.2776 |
b0033 |
carB |
-16.38 |
0.016045 |
157 -- 203 |
40 -- 88 |
carbamoyl-phosphate synthase large subunit |
|
_____________156_________________________________________________204\n_____________|___________________________________________________|\n5'-GCA...UAAUU___________GUAAAACC____________A________AA_____C___CCAAA...CGU-3'\n______________GAG_CAGUACC________GCUAAGUAAU_C_GG_AGUAA___GAGC_AUG\n______________:||_|||:|||________||||||||||_|_||_||:||___||||_|||\n______________UUC_GUCGUGG________CGAUUCAUUA_G_CC_UCGUU___CUCG_UAC\n_________3'-UU___G_______GCCGAC____________U_A__U_____ACA____U___AGCAC...GCG-5'\n_____________|___________________________________________________|\n_____________89__________________________________________________39\n |
178 -- 184 |
62 -- 68 |
-37.8454 kcal/mol |
6.5567 kcal/mol |
14.9104 kcal/mol |
156 204@LB@ | |@LB@5'-GCA...UAAUU GUAAAACC A AA C CCAAA...CGU-3'@LB@ GAG CAGUACC GCUAAGUAAU C GG AGUAA GAGC AUG@LB@ :|| |||:||| |||||||||| | || ||:|| |||| |||@LB@ UUC GUCGUGG CGAUUCAUUA G CC UCGUU CUCG UAC@LB@ 3'-UU G GCCGAC U A U ACA U AGCAC...GCG-5'@LB@ | |@LB@ 89 39@LB@@LB@@LB@Energy -16.38 kcal/mol@LB@Hybridization Energy -37.8454 kcal/mol@LB@Unfolding Energy - mRNA 6.5567 kcal/mol@LB@Unfolding Energy - sRNA 14.9104 kcal/mol@LB@@LB@Position - mRNA 157 -- 203@LB@Position - sRNA 40 -- 88@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 62 -- 68@LB@ |
| 39 |
0.003417 |
0.2776 |
b4469 |
ygiQ |
-15.58 |
0.022035 |
190 -- 206 |
44 -- 60 |
Radical SAM superfamily protein |
|
_____________189_______________207\n_____________|_________________|\n5'-GCG...CAUUU__________AA_____UCUAU...CUC-3'\n______________CUGGAAGCAA__UGAGC\n______________||||||||||__|||||\n______________GACCUUCGUU__ACUCG\n3'-UUU...AUUAU__________AC_____UUACA...GCG-5'\n_____________|_________________|\n_____________61________________43\n |
193 -- 199 |
51 -- 57 |
-24.5566 kcal/mol |
5.6787 kcal/mol |
3.2985 kcal/mol |
189 207@LB@ | |@LB@5'-GCG...CAUUU AA UCUAU...CUC-3'@LB@ CUGGAAGCAA UGAGC@LB@ |||||||||| |||||@LB@ GACCUUCGUU ACUCG@LB@3'-UUU...AUUAU AC UUACA...GCG-5'@LB@ | |@LB@ 61 43@LB@@LB@@LB@Energy -15.58 kcal/mol@LB@Hybridization Energy -24.5566 kcal/mol@LB@Unfolding Energy - mRNA 5.6787 kcal/mol@LB@Unfolding Energy - sRNA 3.2985 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 44 -- 60@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 40 |
0.003423 |
0.2776 |
b3901 |
rhaM |
-14.12 |
0.039141 |
284 -- 296 |
49 -- 61 |
L-rhamnose mutarotase |
|
_____________283___________297\n_____________|_____________|\n5'-ACG...CCAGA_____________CUGA-3'\n______________ACUGGAAGCAGUG\n______________||||||||||:||\n______________UGACCUUCGUUAC\n3'-UUU...CAUUA_____________ACUCG...GCG-5'\n_____________|_____________|\n_____________62____________48\n |
290 -- 296 |
49 -- 55 |
-21.3506 kcal/mol |
4.21776 kcal/mol |
3.00866 kcal/mol |
283 297@LB@ | |@LB@5'-ACG...CCAGA CUGA-3'@LB@ ACUGGAAGCAGUG@LB@ ||||||||||:||@LB@ UGACCUUCGUUAC@LB@3'-UUU...CAUUA ACUCG...GCG-5'@LB@ | |@LB@ 62 48@LB@@LB@@LB@Energy -14.12 kcal/mol@LB@Hybridization Energy -21.3506 kcal/mol@LB@Unfolding Energy - mRNA 4.21776 kcal/mol@LB@Unfolding Energy - sRNA 3.00866 kcal/mol@LB@@LB@Position - mRNA 284 -- 296@LB@Position - sRNA 49 -- 61@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 49 -- 55@LB@ |
