| 161 |
0.02011 |
0.4072 |
b2820 |
recB |
-12.55 |
0.072418 |
202 -- 213 |
37 -- 48 |
exonuclease V (RecBCD complex) beta subunit |
|
_____________201__________214\n_____________|____________|\n5'-GGC...AAGAA____________CCGAG...UUG-3'\n______________UGAGUGAUGUCG\n______________||||::||||||\n______________ACUCGUUACAGC\n3'-UUU...GUUAC____________ACGAA...GCG-5'\n_____________|____________|\n_____________49___________36\n |
207 -- 213 |
37 -- 43 |
-16.4196 kcal/mol |
2.71715 kcal/mol |
1.1567 kcal/mol |
201 214@LB@ | |@LB@5'-GGC...AAGAA CCGAG...UUG-3'@LB@ UGAGUGAUGUCG@LB@ ||||::||||||@LB@ ACUCGUUACAGC@LB@3'-UUU...GUUAC ACGAA...GCG-5'@LB@ | |@LB@ 49 36@LB@@LB@@LB@Energy -12.55 kcal/mol@LB@Hybridization Energy -16.4196 kcal/mol@LB@Unfolding Energy - mRNA 2.71715 kcal/mol@LB@Unfolding Energy - sRNA 1.1567 kcal/mol@LB@@LB@Position - mRNA 202 -- 213@LB@Position - sRNA 37 -- 48@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 162 |
0.02022 |
0.4072 |
b3354 |
yheU |
-12.65 |
0.069641 |
153 -- 196 |
51 -- 89 |
UPF0270 family protein |
|
_____________152__________________________________________197\n_____________|____________________________________________|\n5'-CUG...UGGCU_______C___UU____A________CAAC___U__________AAUCA...GUA-3'\n______________GGAGUCA_GCA__CCUG_CUGGUUAA____GUA_CUGGAGGCGA\n______________::||:||_|||__||:|_||||:|||____:||_|||||:||:|\n______________UUUCGGU_CGU__GGGC_GACCGAUU____UAU_GACCUUCGUU\n__________3'-U_________________C________CAU_______________ACACU...GCG-5'\n_____________|____________________________________________|\n_____________90___________________________________________50\n |
189 -- 195 |
52 -- 58 |
-41.3188 kcal/mol |
14.1702 kcal/mol |
14.5017 kcal/mol |
152 197@LB@ | |@LB@5'-CUG...UGGCU C UU A CAAC U AAUCA...GUA-3'@LB@ GGAGUCA GCA CCUG CUGGUUAA GUA CUGGAGGCGA@LB@ ::||:|| ||| ||:| ||||:||| :|| |||||:||:|@LB@ UUUCGGU CGU GGGC GACCGAUU UAU GACCUUCGUU@LB@ 3'-U C CAU ACACU...GCG-5'@LB@ | |@LB@ 90 50@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -41.3188 kcal/mol@LB@Unfolding Energy - mRNA 14.1702 kcal/mol@LB@Unfolding Energy - sRNA 14.5017 kcal/mol@LB@@LB@Position - mRNA 153 -- 196@LB@Position - sRNA 51 -- 89@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 163 |
0.02026 |
0.4072 |
b1283 |
osmB |
-10.88 |
0.136535 |
231 -- 259 |
38 -- 61 |
osmotically and stress inducible lipoprotein |
|
_____________230___________________________260\n_____________|_____________________________|\n5'-UAA...CCGCG____UUCU______UACUUU_________UCUGA...ACA-3'\n______________GCUG____GGCAAU______GGCAAUGUC\n______________:|||____:|||||______:||||||||\n______________UGAC____UCGUUA______UCGUUACAG\n3'-UUU...CAUUA____CU________CAC____________CACGA...GCG-5'\n_____________|_____________________________|\n_____________62____________________________37\n |
253 -- 259 |
38 -- 44 |
-21.4164 kcal/mol |
7.23917 kcal/mol |
3.30134 kcal/mol |
230 260@LB@ | |@LB@5'-UAA...CCGCG UUCU UACUUU UCUGA...ACA-3'@LB@ GCUG GGCAAU GGCAAUGUC@LB@ :||| :||||| :||||||||@LB@ UGAC UCGUUA UCGUUACAG@LB@3'-UUU...CAUUA CU CAC CACGA...GCG-5'@LB@ | |@LB@ 62 37@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -21.4164 kcal/mol@LB@Unfolding Energy - mRNA 7.23917 kcal/mol@LB@Unfolding Energy - sRNA 3.30134 kcal/mol@LB@@LB@Position - mRNA 231 -- 259@LB@Position - sRNA 38 -- 61@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 164 |
0.02028 |
0.4072 |
b3295 |
rpoA |
-11.98 |
0.089862 |
19 -- 43 |
66 -- 90 |
RNA polymerase alpha subunit |
|
_____________18_________________________44\n_____________|__________________________|\n5'-GAA...CGCGU__________U__G_A__________CAGCG...GUG-3'\n______________GAAAGCC_GC_CU_G_GCUGGCUGAG\n______________:||||||_||_|:_|_|||||||:||\n______________UUUUCGG_CG_GG_C_CGACCGAUUC\n___________3'-_______U__U__G____________AUUAU...GCG-5'\n______________|_________________________|\n______________90________________________65\n |
37 -- 43 |
66 -- 72 |
-33.5627 kcal/mol |
9.82436 kcal/mol |
11.7544 kcal/mol |
18 44@LB@ | |@LB@5'-GAA...CGCGU U G A CAGCG...GUG-3'@LB@ GAAAGCC GC CU G GCUGGCUGAG@LB@ :|||||| || |: | |||||||:||@LB@ UUUUCGG CG GG C CGACCGAUUC@LB@ 3'- U U G AUUAU...GCG-5'@LB@ | |@LB@ 90 65@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -33.5627 kcal/mol@LB@Unfolding Energy - mRNA 9.82436 kcal/mol@LB@Unfolding Energy - sRNA 11.7544 kcal/mol@LB@@LB@Position - mRNA 19 -- 43@LB@Position - sRNA 66 -- 90@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 165 |
0.02037 |
0.4072 |
b1981 |
shiA |
-10.79 |
0.140980 |
142 -- 153 |
44 -- 55 |
shikimate transporter |
|
_____________141__________154\n_____________|____________|\n5'-CUG...UCGAC____________UACCU...UCG-3'\n______________GGCAAUGUGAGU\n______________:||||||||||:\n______________UCGUUACACUCG\n3'-UUU...GACCU____________UUACA...GCG-5'\n_____________|____________|\n_____________56___________43\n |
147 -- 153 |
44 -- 50 |
-18.9093 kcal/mol |
4.9192 kcal/mol |
3.20048 kcal/mol |
141 154@LB@ | |@LB@5'-CUG...UCGAC UACCU...UCG-3'@LB@ GGCAAUGUGAGU@LB@ :||||||||||:@LB@ UCGUUACACUCG@LB@3'-UUU...GACCU UUACA...GCG-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -18.9093 kcal/mol@LB@Unfolding Energy - mRNA 4.9192 kcal/mol@LB@Unfolding Energy - sRNA 3.20048 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 166 |
0.02064 |
0.4072 |
b0429 |
cyoD |
-11.77 |
0.097498 |
188 -- 206 |
44 -- 59 |
cytochrome o ubiquinol oxidase subunit IV |
|
_____________187_________________207\n_____________|___________________|\n5'-UUC...UCUGA____________AAU____CAUUC...UCU-3'\n______________UGGGGGCGAUGU___GAGU\n______________|||::||:||||___|||:\n______________ACCUUCGUUACA___CUCG\n3'-UUU...UUAUG___________________UUACA...GCG-5'\n_____________|___________________|\n_____________60__________________43\n |
193 -- 199 |
48 -- 54 |
-20.4312 kcal/mol |
5.39053 kcal/mol |
3.27056 kcal/mol |
187 207@LB@ | |@LB@5'-UUC...UCUGA AAU CAUUC...UCU-3'@LB@ UGGGGGCGAUGU GAGU@LB@ |||::||:|||| |||:@LB@ ACCUUCGUUACA CUCG@LB@3'-UUU...UUAUG UUACA...GCG-5'@LB@ | |@LB@ 60 43@LB@@LB@@LB@Energy -11.77 kcal/mol@LB@Hybridization Energy -20.4312 kcal/mol@LB@Unfolding Energy - mRNA 5.39053 kcal/mol@LB@Unfolding Energy - sRNA 3.27056 kcal/mol@LB@@LB@Position - mRNA 188 -- 206@LB@Position - sRNA 44 -- 59@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 167 |
0.02069 |
0.4072 |
b2897 |
sdhE |
-17.17 |
0.011699 |
7 -- 68 |
8 -- 56 |
flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair |
|
_____________6_______________________________________________________________69\n_____________|_______________________________________________________________|\n_____5'-GUAAAA____U___A________CAA_________CUACGCGAUCUGUGCC__________C_A_____AAAAA...ACA-3'\n______________GAGC_AUG__GGCAAUG___GUGCUUUCA________________UUCUGCGAGG_G_CUUCC\n______________:|||_|||__:||||||___|||||||||________________:||:||||||_|_|||||\n______________UUCG_UAC__UCGUUAC___CACGAAAGU________________GAGGCGCUCC_C_GAAGG\n3'-UUU...UGACC____U___AC_______AG__________CCAA________________________A_____ACUAGCG-5'\n_____________|_______________________________________________________________|\n_____________57______________________________________________________________7\n |
54 -- 60 |
15 -- 21 |
-49.3967 kcal/mol |
18.1865 kcal/mol |
14.0385 kcal/mol |
6 69@LB@ | |@LB@ 5'-GUAAAA U A CAA CUACGCGAUCUGUGCC C A AAAAA...ACA-3'@LB@ GAGC AUG GGCAAUG GUGCUUUCA UUCUGCGAGG G CUUCC@LB@ :||| ||| :|||||| ||||||||| :||:|||||| | |||||@LB@ UUCG UAC UCGUUAC CACGAAAGU GAGGCGCUCC C GAAGG@LB@3'-UUU...UGACC U AC AG CCAA A ACUAGCG-5'@LB@ | |@LB@ 57 7@LB@@LB@@LB@Energy -17.17 kcal/mol@LB@Hybridization Energy -49.3967 kcal/mol@LB@Unfolding Energy - mRNA 18.1865 kcal/mol@LB@Unfolding Energy - sRNA 14.0385 kcal/mol@LB@@LB@Position - mRNA 7 -- 68@LB@Position - sRNA 8 -- 56@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 168 |
0.02071 |
0.4072 |
b2431 |
yfeX |
-10.86 |
0.137197 |
192 -- 213 |
24 -- 58 |
porphyrinogen oxidase cytoplasmic |
|
_____________191_________________________________214\n_____________|___________________________________|\n5'-AUU...UUUCA_____AA____________________________AGAGU...CCA-3'\n______________GGAGG_________CAAUGUC______UCAGGUUC\n______________|||:|_________|||||||______||||||||\n______________CCUUC_________GUUACAG______AGUCCAAG\n3'-UUU...UAUGA_____GUUACACUC_______CACGAA________AGGCG...GCG-5'\n_____________|___________________________________|\n_____________59__________________________________23\n |
207 -- 213 |
24 -- 30 |
-23.408 kcal/mol |
4.6321 kcal/mol |
7.91302 kcal/mol |
191 214@LB@ | |@LB@5'-AUU...UUUCA AA AGAGU...CCA-3'@LB@ GGAGG CAAUGUC UCAGGUUC@LB@ |||:| ||||||| ||||||||@LB@ CCUUC GUUACAG AGUCCAAG@LB@3'-UUU...UAUGA GUUACACUC CACGAA AGGCG...GCG-5'@LB@ | |@LB@ 59 23@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -23.408 kcal/mol@LB@Unfolding Energy - mRNA 4.6321 kcal/mol@LB@Unfolding Energy - sRNA 7.91302 kcal/mol@LB@@LB@Position - mRNA 192 -- 213@LB@Position - sRNA 24 -- 58@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 169 |
0.02092 |
0.4072 |
b4471 |
tdcG |
-11.09 |
0.126171 |
119 -- 152 |
36 -- 66 |
L-serine dehydratase 3 anaerobic |
|
_____________118________________________________153\n_____________|__________________________________|\n5'-AAC...AGUAC_______GUA____CUC_______GGACG_____AAGGU...UGG-3'\n______________GUAGUGC___AAGC___GUGAGCG_____GUCGU\n______________|||:|:|___||||___||||||:_____|||||\n______________CAUUAUG___UUCG___CACUCGU_____CAGCA\n3'-UUU...CGAUU_______ACC____UUA_______UA________CGAAA...GCG-5'\n_____________|__________________________________|\n_____________67_________________________________35\n |
136 -- 142 |
43 -- 49 |
-27.48 kcal/mol |
13.0871 kcal/mol |
3.30555 kcal/mol |
118 153@LB@ | |@LB@5'-AAC...AGUAC GUA CUC GGACG AAGGU...UGG-3'@LB@ GUAGUGC AAGC GUGAGCG GUCGU@LB@ |||:|:| |||| ||||||: |||||@LB@ CAUUAUG UUCG CACUCGU CAGCA@LB@3'-UUU...CGAUU ACC UUA UA CGAAA...GCG-5'@LB@ | |@LB@ 67 35@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -27.48 kcal/mol@LB@Unfolding Energy - mRNA 13.0871 kcal/mol@LB@Unfolding Energy - sRNA 3.30555 kcal/mol@LB@@LB@Position - mRNA 119 -- 152@LB@Position - sRNA 36 -- 66@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 170 |
0.02096 |
0.4072 |
b2283 |
nuoG |
-12.68 |
0.068788 |
186 -- 195 |
52 -- 61 |
NADH:ubiquinone oxidoreductase chain G |
|
_____________185________196\n_____________|__________|\n5'-CUG...AGAAA__________UGCUA...UUU-3'\n______________ACUGGAAGCA\n______________||||||||||\n______________UGACCUUCGU\n3'-UUU...CAUUA__________UACAC...GCG-5'\n_____________|__________|\n_____________62_________51\n |
189 -- 195 |
52 -- 58 |
-16.7738 kcal/mol |
1.20687 kcal/mol |
2.88813 kcal/mol |
185 196@LB@ | |@LB@5'-CUG...AGAAA UGCUA...UUU-3'@LB@ ACUGGAAGCA@LB@ ||||||||||@LB@ UGACCUUCGU@LB@3'-UUU...CAUUA UACAC...GCG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -12.68 kcal/mol@LB@Hybridization Energy -16.7738 kcal/mol@LB@Unfolding Energy - mRNA 1.20687 kcal/mol@LB@Unfolding Energy - sRNA 2.88813 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
