| 131 |
0.01424 |
0.3651 |
b0058 |
rluA |
-14.42 |
0.034831 |
43 -- 63 |
40 -- 60 |
dual specificity 23S rRNA pseudouridine(746) tRNA pseudouridine(32) synthase SAM-dependent |
|
_____________42____________________64\n_____________|_____________________|\n5'-CGU...CUCGU________UC__C_U______AACCC...UGU-3'\n______________CUGGAAGC__UG_G_GCAGUG\n______________||||||||__||_|_|||:||\n______________GACCUUCG__AC_C_CGUUAC\n3'-UUU...AUUAU________UU__A_U______AGCAC...GCG-5'\n_____________|_____________________|\n_____________61____________________39\n |
44 -- 50 |
53 -- 59 |
-25.1761 kcal/mol |
7.45543 kcal/mol |
3.29985 kcal/mol |
42 64@LB@ | |@LB@5'-CGU...CUCGU UC C U AACCC...UGU-3'@LB@ CUGGAAGC UG G GCAGUG@LB@ |||||||| || | |||:||@LB@ GACCUUCG AC C CGUUAC@LB@3'-UUU...AUUAU UU A U AGCAC...GCG-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -14.42 kcal/mol@LB@Hybridization Energy -25.1761 kcal/mol@LB@Unfolding Energy - mRNA 7.45543 kcal/mol@LB@Unfolding Energy - sRNA 3.29985 kcal/mol@LB@@LB@Position - mRNA 43 -- 63@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 132 |
0.01454 |
0.37 |
b1083 |
flgL |
-7.54 |
0.428067 |
272 -- 293 |
37 -- 57 |
flagellar hook-filament junction protein |
|
_____________271____________________294\n_____________|______________________|\n5'-UUG...UGGAU______CG_C__ACA_______ACGGGUA-3'\n______________GAAGUA__G_GA___GAUGUCG\n______________||||:|__|_||___:||||||\n______________CUUCGU__C_CU___UUACAGC\n3'-UUU...AUGAC______UA_A__CG________ACGAA...GCG-5'\n_____________|______________________|\n_____________58_____________________36\n |
287 -- 293 |
37 -- 43 |
-16.4529 kcal/mol |
5.68525 kcal/mol |
3.2267 kcal/mol |
271 294@LB@ | |@LB@5'-UUG...UGGAU CG C ACA ACGGGUA-3'@LB@ GAAGUA G GA GAUGUCG@LB@ ||||:| | || :||||||@LB@ CUUCGU C CU UUACAGC@LB@3'-UUU...AUGAC UA A CG ACGAA...GCG-5'@LB@ | |@LB@ 58 36@LB@@LB@@LB@Energy -7.54 kcal/mol@LB@Hybridization Energy -16.4529 kcal/mol@LB@Unfolding Energy - mRNA 5.68525 kcal/mol@LB@Unfolding Energy - sRNA 3.2267 kcal/mol@LB@@LB@Position - mRNA 272 -- 293@LB@Position - sRNA 37 -- 57@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 133 |
0.0147 |
0.3709 |
b3832 |
rmuC |
-11.93 |
0.091595 |
31 -- 71 |
21 -- 63 |
DNA recombination protein |
|
_____________30________________________________________________72\n_____________|_________________________________________________|\n5'-AAA...AAAUC___G_________________C______CU___GUAA___UC_______UGUCU...AGC-3'\n______________GUG_UGGAAGC______GGCG__GUCGU__GCU____UUC___UUCUCC\n______________:|:_|||||||______:||:__|||||__|||____|||___||||||\n______________UAU_ACCUUCG______UCGU__CAGCA__CGA____AAG___AAGAGG\n3'-UUU...UUCAU___G_______UUACAC____UA_________________UCC______CGCUC...GCG-5'\n_____________|_________________________________________________|\n_____________64________________________________________________20\n |
35 -- 41 |
53 -- 59 |
-30.4211 kcal/mol |
10.4952 kcal/mol |
7.99187 kcal/mol |
30 72@LB@ | |@LB@5'-AAA...AAAUC G C CU GUAA UC UGUCU...AGC-3'@LB@ GUG UGGAAGC GGCG GUCGU GCU UUC UUCUCC@LB@ :|: ||||||| :||: ||||| ||| ||| ||||||@LB@ UAU ACCUUCG UCGU CAGCA CGA AAG AAGAGG@LB@3'-UUU...UUCAU G UUACAC UA UCC CGCUC...GCG-5'@LB@ | |@LB@ 64 20@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -30.4211 kcal/mol@LB@Unfolding Energy - mRNA 10.4952 kcal/mol@LB@Unfolding Energy - sRNA 7.99187 kcal/mol@LB@@LB@Position - mRNA 31 -- 71@LB@Position - sRNA 21 -- 63@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 134 |
0.01479 |
0.3709 |
b1930 |
yedF |
-8.51 |
0.315187 |
12 -- 23 |
55 -- 66 |
putative TusA family sulfurtransferase |
|
_____________11___________24\n_____________|____________|\n5'-ACG...CUGGC___U________UGAUU...AAG-3'\n______________GUA_UACUGGGA\n______________|||_||||||:|\n______________CAU_AUGACCUU\n3'-UUU...CGAUU___U________CGUUA...GCG-5'\n_____________|____________|\n_____________67___________54\n |
17 -- 23 |
55 -- 61 |
-12.6769 kcal/mol |
2.14533 kcal/mol |
2.01956 kcal/mol |
11 24@LB@ | |@LB@5'-ACG...CUGGC U UGAUU...AAG-3'@LB@ GUA UACUGGGA@LB@ ||| ||||||:|@LB@ CAU AUGACCUU@LB@3'-UUU...CGAUU U CGUUA...GCG-5'@LB@ | |@LB@ 67 54@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -12.6769 kcal/mol@LB@Unfolding Energy - mRNA 2.14533 kcal/mol@LB@Unfolding Energy - sRNA 2.01956 kcal/mol@LB@@LB@Position - mRNA 12 -- 23@LB@Position - sRNA 55 -- 66@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 135 |
0.0153 |
0.379 |
b1245 |
oppC |
-10.91 |
0.134968 |
184 -- 214 |
42 -- 65 |
oligopeptide ABC transporter permease |
|
_____________183_____________________________215\n_____________|_______________________________|\n5'-GGU...GUUAC___________CUC______A__UUA_____GAAAA...UUA-3'\n______________UGAUACUGGAG___GCGAUG_UG___AGUAA\n______________|:||||||||:___||:|||_||___||:||\n______________AUUAUGACCUU___CGUUAC_AC___UCGUU\n3'-UUU...GAUUC_______________________________ACAGC...GCG-5'\n_____________|_______________________________|\n_____________66______________________________41\n |
188 -- 194 |
55 -- 61 |
-22.5581 kcal/mol |
8.34668 kcal/mol |
3.30456 kcal/mol |
183 215@LB@ | |@LB@5'-GGU...GUUAC CUC A UUA GAAAA...UUA-3'@LB@ UGAUACUGGAG GCGAUG UG AGUAA@LB@ |:||||||||: ||:||| || ||:||@LB@ AUUAUGACCUU CGUUAC AC UCGUU@LB@3'-UUU...GAUUC ACAGC...GCG-5'@LB@ | |@LB@ 66 41@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -22.5581 kcal/mol@LB@Unfolding Energy - mRNA 8.34668 kcal/mol@LB@Unfolding Energy - sRNA 3.30456 kcal/mol@LB@@LB@Position - mRNA 184 -- 214@LB@Position - sRNA 42 -- 65@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 136 |
0.01542 |
0.379 |
b0428 |
cyoE |
-15.83 |
0.019915 |
1 -- 35 |
23 -- 58 |
protoheme IX farnesyltransferase |
|
______________1____________________________________36\n______________|____________________________________|\n___________5'-_________CCU_______GCA___G_A_________GGUGC...GCA-3'\n______________GGAA_CAAU___GGCAAUG___GUG_U__CAGGUUCU\n______________||||_||||___:||||||___|||_|__||||||||\n______________CCUU_GUUA___UCGUUAC___CAC_A__GUCCAAGA\n3'-UUU...UAUGA____C____CAC_______AG____G_AA________GGCGC...GCG-5'\n_____________|_____________________________________|\n_____________59____________________________________22\n |
29 -- 35 |
23 -- 29 |
-31.8533 kcal/mol |
8.10531 kcal/mol |
7.91355 kcal/mol |
1 36@LB@ | |@LB@ 5'- CCU GCA G A GGUGC...GCA-3'@LB@ GGAA CAAU GGCAAUG GUG U CAGGUUCU@LB@ |||| |||| :|||||| ||| | ||||||||@LB@ CCUU GUUA UCGUUAC CAC A GUCCAAGA@LB@3'-UUU...UAUGA C CAC AG G AA GGCGC...GCG-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -15.83 kcal/mol@LB@Hybridization Energy -31.8533 kcal/mol@LB@Unfolding Energy - mRNA 8.10531 kcal/mol@LB@Unfolding Energy - sRNA 7.91355 kcal/mol@LB@@LB@Position - mRNA 1 -- 35@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 137 |
0.01545 |
0.379 |
b0881 |
clpS |
-11.92 |
0.091960 |
57 -- 82 |
37 -- 62 |
regulatory protein for ClpA substrate specificity |
|
_____________56_________________________83\n_____________|__________________________|\n5'-GCA...AACGC_____AC__G_______CA_______CUGAU...UCA-3'\n______________UAUUG__AG_AAUGUGA__GAUGUCG\n______________||:||__||_|||||||__:||||||\n______________AUGAC__UC_UUACACU__UUACAGC\n3'-UUU...UCAUU_____CU__G_______CG_______ACGAA...GCG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
76 -- 82 |
37 -- 43 |
-23.3317 kcal/mol |
8.10565 kcal/mol |
3.3026 kcal/mol |
56 83@LB@ | |@LB@5'-GCA...AACGC AC G CA CUGAU...UCA-3'@LB@ UAUUG AG AAUGUGA GAUGUCG@LB@ ||:|| || ||||||| :||||||@LB@ AUGAC UC UUACACU UUACAGC@LB@3'-UUU...UCAUU CU G CG ACGAA...GCG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -23.3317 kcal/mol@LB@Unfolding Energy - mRNA 8.10565 kcal/mol@LB@Unfolding Energy - sRNA 3.3026 kcal/mol@LB@@LB@Position - mRNA 57 -- 82@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 138 |
0.01576 |
0.3813 |
b3361 |
fic |
-10.85 |
0.137765 |
79 -- 110 |
27 -- 60 |
stationary phase-induced protein putative toxin |
|
_____________78__________________________________111\n_____________|___________________________________|\n5'-CGC...CGUCU________UUC_______UAA____AA________CCAGU...AAC-3'\n______________CUGGGAGC______AGCG___UCGU__UUUUCAGG\n______________||||:|||______|||:___||||__:|||||||\n______________GACCUUCG______UCGU___AGCA__GAAAGUCC\n3'-UUU...AUUAU________UUACAC____UAC____C_________AAGAG...GCG-5'\n_____________|___________________________________|\n_____________61__________________________________26\n |
104 -- 110 |
27 -- 33 |
-28.8548 kcal/mol |
10.0238 kcal/mol |
7.97931 kcal/mol |
78 111@LB@ | |@LB@5'-CGC...CGUCU UUC UAA AA CCAGU...AAC-3'@LB@ CUGGGAGC AGCG UCGU UUUUCAGG@LB@ ||||:||| |||: |||| :|||||||@LB@ GACCUUCG UCGU AGCA GAAAGUCC@LB@3'-UUU...AUUAU UUACAC UAC C AAGAG...GCG-5'@LB@ | |@LB@ 61 26@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -28.8548 kcal/mol@LB@Unfolding Energy - mRNA 10.0238 kcal/mol@LB@Unfolding Energy - sRNA 7.97931 kcal/mol@LB@@LB@Position - mRNA 79 -- 110@LB@Position - sRNA 27 -- 60@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 139 |
0.01578 |
0.3813 |
b3386 |
rpe |
-11.91 |
0.092481 |
276 -- 300 |
34 -- 60 |
D-ribulose-5-phosphate 3-epimerase |
|
_____________275_________________________300\n_____________|___________________________|\n5'-CGC...AAGCC____C_________C__U__________-3'\n______________CUGG_AGC__UG_G_GC_GAUGUCGUGC\n______________||||_|||__||_|_||_:|||||||||\n______________GACC_UCG__AC_C_CG_UUACAGCACG\n3'-UUU...AUUAU____U___UU__A_U_____________AAAGU...GCG-5'\n_____________|____________________________|\n_____________61___________________________33\n |
294 -- 300 |
34 -- 40 |
-27.2321 kcal/mol |
8.55668 kcal/mol |
6.76671 kcal/mol |
275 300@LB@ | |@LB@5'-CGC...AAGCC C C U -3'@LB@ CUGG AGC UG G GC GAUGUCGUGC@LB@ |||| ||| || | || :|||||||||@LB@ GACC UCG AC C CG UUACAGCACG@LB@3'-UUU...AUUAU U UU A U AAAGU...GCG-5'@LB@ | |@LB@ 61 33@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -27.2321 kcal/mol@LB@Unfolding Energy - mRNA 8.55668 kcal/mol@LB@Unfolding Energy - sRNA 6.76671 kcal/mol@LB@@LB@Position - mRNA 276 -- 300@LB@Position - sRNA 34 -- 60@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 140 |
0.01604 |
0.3851 |
b4022 |
rluF |
-13.68 |
0.046602 |
82 -- 103 |
39 -- 60 |
23S rRNA pseudouridine(2604) synthase |
|
_____________81______________________104\n_____________|_______________________|\n5'-UUA...UGCUU____A_______U__________AACGA...UGU-3'\n______________CUGG_AAGUGAU_UGAGCAG_GU\n______________||||_|||::||_||||||:_||\n______________GACC_UUCGUUA_ACUCGUU_CA\n3'-UUU...AUUAU____________C_______A__GCACG...GCG-5'\n_____________|_______________________|\n_____________61______________________38\n |
95 -- 101 |
42 -- 48 |
-22.0004 kcal/mol |
5.021 kcal/mol |
3.3001 kcal/mol |
81 104@LB@ | |@LB@5'-UUA...UGCUU A U AACGA...UGU-3'@LB@ CUGG AAGUGAU UGAGCAG GU@LB@ |||| |||::|| ||||||: ||@LB@ GACC UUCGUUA ACUCGUU CA@LB@3'-UUU...AUUAU C A GCACG...GCG-5'@LB@ | |@LB@ 61 38@LB@@LB@@LB@Energy -13.68 kcal/mol@LB@Hybridization Energy -22.0004 kcal/mol@LB@Unfolding Energy - mRNA 5.021 kcal/mol@LB@Unfolding Energy - sRNA 3.3001 kcal/mol@LB@@LB@Position - mRNA 82 -- 103@LB@Position - sRNA 39 -- 60@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 42 -- 48@LB@ |
