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CopraRNA 2727377

Input and runtime details for job 2727377 (precomputed example)

Sequence input

? sRNA sequences[.fa]
? Putative target sequences (organism of interest)[.fa]
? Extract sequences aroundstart codon
? nt up (1-300)200
? nt down (1-300)100

CopraRNA parameters

? Consensus prediction off
? p-value combinationno
? p-value filtering (0=off)0

IntaRNA parameters

? Target folding window size150
? Target max. basepair distance100

Job ID 2727377 (server version trunk)

?Job Submitted & Queued@ Fri Feb 16 15:29:09 CET 2018
?CopraRNA Started@ Fri Feb 16 15:29:28 CET 2018
?CopraRNA Finished & Post-Processing@ Fri Feb 16 20:18:35 CET 2018
?Post-Processing Finished@ Fri Feb 16 20:18:43 CET 2018
?Job Completed@ Fri Feb 16 20:19:11 CET 2018
 DIRECT ACCESS: http://rna.informatik.uni-freiburg.de/RetrieveResults.jsp?jobID=2727377&toolName=CopraRNA ( 30 days expiry )

Description of the job

RyhB

Output download complete results [zip]

Downloadable files

[csv]
[txt]
[csv]
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heatmap

? Conserved, identified interactions for NC_000913 Escherichia coli str. K-12 substr. MG1655

Sort by selecting a column name:
Rank CopraRNA p-value CopraRNA fdr value Locus Tag Gene Name Energy [kcal/mol] IntaRNA p-value Position mRNA Position sRNA Annotation Additional homologs
1 0 0 b3441 yhhY -117.23 0.000000 1 -- 79 1 -- 79 aminoacyl nucleotide detoxifying acetyltransferase  
2 1.064e-05 0.01787 b1683 sufB -21.37 0.002185 208 -- 233 38 -- 66 component of SufBCD Fe-S cluster assembly scaffold  
3 2.244e-05 0.02513 b1107 nagZ -17.54 0.010122 191 -- 218 37 -- 58 beta N-acetyl-glucosaminidase  
4 0.0001495 0.1256 b3867 hemN -18.37 0.007265 188 -- 239 3 -- 58 coproporphyrinogen III oxidase SAM and NAD(P)H dependent oxygen-independent  
5 0.0002772 0.1521 b3365 nirB -15.55 0.022306 192 -- 212 38 -- 57 nitrite reductase large subunit NAD(P)H-binding  
6 0.0003052 0.1521 b4255 rraB -18.72 0.006315 136 -- 158 39 -- 61 protein inhibitor of RNase E  
7 0.0003168 0.1521 b0894 dmsA -18.01 0.008378 163 -- 184 42 -- 62 dimethyl sulfoxide reductase anaerobic subunit A b1588 b1587
8 0.0004259 0.161 b4019 metH -17.34 0.010954 191 -- 208 42 -- 58 homocysteine-N5-methyltetrahydrofolate transmethylase B12-dependent  
9 0.0004314 0.161 b1647 ydhF -17.39 0.010703 25 -- 48 37 -- 61 putative oxidoreductase  
10 0.0006218 0.2043 b1423 ydcJ -15.65 0.021404 209 -- 256 38 -- 84 putative metalloenzyme  
11 0.000669 0.2043 b4154 frdA -13.85 0.043591 184 -- 204 34 -- 53 anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit  
12 0.0007887 0.2153 b3981 secE -14.50 0.033700 225 -- 262 36 -- 90 preprotein translocase membrane subunit  
13 0.000833 0.2153 b1531 marA -8.74 0.292618 190 -- 205 38 -- 57 multiple antibiotic resistance transcriptional regulator  
14 0.0009144 0.2195 b0181 lpxA -19.56 0.004514 124 -- 202 1 -- 90 UDP-N-acetylglucosamine acetyltransferase  
15 0.001024 0.2294 b2822 recC -16.38 0.016046 234 -- 264 37 -- 63 exonuclease V (RecBCD complex) gamma chain  
16 0.00116 0.2406 b0221 fadE -14.73 0.030789 87 -- 104 36 -- 53 acyl coenzyme A dehydrogenase  
17 0.001256 0.2406 b2496 hda -13.91 0.042623 63 -- 79 52 -- 68 ATPase regulatory factor involved in DnaA inactivation  
18 0.001289 0.2406 b3930 menA -10.08 0.182848 73 -- 82 42 -- 51 1 4-dihydroxy-2-naphthoate octaprenyltransferase  
19 0.001375 0.2431 b0722 sdhD -16.32 0.016452 168 -- 195 12 -- 41 succinate dehydrogenase membrane subunit binds cytochrome b556  
20 0.001583 0.2659 b4547 ypfN -17.32 0.011014 197 -- 242 38 -- 88 putative membrane protein UPF0370 family  
21 0.001761 0.2682 b2988 gss -16.20 0.017239 12 -- 42 38 -- 68 glutathionylspermidine amidase and glutathionylspermidine synthetase  
22 0.001794 0.2682 b1992 cobS -11.39 0.112398 162 -- 208 42 -- 83 cobalamin synthase  
23 0.001852 0.2682 b4059 ssb -13.81 0.044308 47 -- 78 34 -- 64 single-stranded DNA-binding protein  
24 0.001915 0.2682 b0893 serS -16.11 0.017871 52 -- 73 67 -- 90 seryl-tRNA synthetase  
25 0.002073 0.2692 b3163 nlpI -16.34 0.016289 1 -- 45 38 -- 89 lipoprotein involved in osmotic sensitivity and filamentation  
26 0.002118 0.2692 b1181 ycgN -20.05 0.003709 218 -- 269 37 -- 88 UPF0153 family cysteine cluster protein  
27 0.002163 0.2692 b2563 acpS -16.12 0.017802 179 -- 203 40 -- 65 holo-[acyl-carrier-protein] synthase 1  
28 0.002335 0.2776 b3248 yhdE -16.83 0.013392 101 -- 153 6 -- 68 dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase  
29 0.002852 0.2776 b3779 gpp -14.27 0.036904 25 -- 63 25 -- 66 guanosine pentaphosphatase/exopolyphosphatase  
30 0.002864 0.2776 b1863 ruvC -10.04 0.185852 89 -- 98 54 -- 63 component of RuvABC resolvasome endonuclease  
31 0.002952 0.2776 b3052 hldE -18.29 0.007494 235 -- 261 44 -- 68 heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase  
32 0.002983 0.2776 b3032 cpdA -14.85 0.029357 133 -- 158 40 -- 64 3' 5' cAMP phosphodiesterase  
33 0.003005 0.2776 b0698 kdpA -12.81 0.065301 205 -- 229 1 -- 24 potassium translocating ATPase subunit A  
34 0.003032 0.2776 b3928 zapB -12.77 0.066459 230 -- 240 51 -- 61 FtsZ stabilizer septal ring assembly factor cell division stimulator  
35 0.003076 0.2776 b1678 ldtE -14.38 0.035403 2 -- 13 49 -- 60 murein L D-transpeptidase  
36 0.00312 0.2776 b1418 cybB -18.82 0.006053 229 -- 299 21 -- 85 cytochrome b561  
37 0.003144 0.2776 b3743 asnC -18.99 0.005660 240 -- 261 40 -- 60 transcriptional activator of asnA; autorepressor  
38 0.003171 0.2776 b0033 carB -16.38 0.016045 157 -- 203 40 -- 88 carbamoyl-phosphate synthase large subunit  
39 0.003417 0.2776 b4469 ygiQ -15.58 0.022035 190 -- 206 44 -- 60 Radical SAM superfamily protein  
40 0.003423 0.2776 b3901 rhaM -14.12 0.039141 284 -- 296 49 -- 61 L-rhamnose mutarotase  
41 0.003449 0.2776 b1908 yecA -17.18 0.011646 29 -- 47 36 -- 56 UPF0149 family protein  
42 0.003478 0.2776 b1882 cheY -11.00 0.130280 3 -- 21 36 -- 55 chemotaxis regulator transmitting signal to flagellar motor component  
43 0.003552 0.2776 b3453 ugpB -15.55 0.022327 231 -- 272 40 -- 85 sn-glycerol-3-phosphate ABC transporter periplasmic binding protein  
44 0.003649 0.2787 b0147 ligT -12.24 0.081601 33 -- 98 26 -- 85 2'-5' RNA ligase  
45 0.00394 0.2905 b4551 yheV -11.41 0.111890 172 -- 193 40 -- 61 DUF2387 family putative metal-binding protein  
46 0.004112 0.2905 b3263 yhdU -13.66 0.046979 167 -- 251 6 -- 86 putative membrane protein  
47 0.004313 0.2905 b3739 atpI -14.34 0.035947 179 -- 205 38 -- 58 ATP synthase membrane-bound accessory factor  
48 0.004482 0.2905 b4045 yjbJ -14.69 0.031336 242 -- 268 42 -- 68 stress-induced protein UPF0337 family  
49 0.004671 0.2905 b3184 yhbE -14.90 0.028775 284 -- 299 49 -- 64 EamA family inner membrane putative transporter  
50 0.004678 0.2905 b0906 ycaP -14.80 0.029952 1 -- 24 40 -- 67 UPF0702 family putative inner membrane protein  
51 0.00476 0.2905 b3607 cysE -15.05 0.027128 184 -- 209 34 -- 63 serine acetyltransferase  
52 0.004779 0.2905 b4122 fumB -12.31 0.079331 182 -- 204 48 -- 68 anaerobic class I fumarate hydratase (fumarase B)  
53 0.004949 0.2905 b3353 yheT -17.66 0.009631 104 -- 164 43 -- 88 UPF0017 family putative hydrolase  
54 0.00511 0.2905 b0487 cueR -8.71 0.294876 81 -- 102 6 -- 25 copper-responsive regulon transcriptional regulator  
55 0.005153 0.2905 b2727 hypB -14.04 0.040392 194 -- 204 39 -- 49 GTP hydrolase involved in nickel liganding into hydrogenases  
56 0.005166 0.2905 b0152 fhuD -11.53 0.106927 159 -- 195 38 -- 86 iron(3+)-hydroxamate import ABC transporter periplasmic binding protein  
57 0.005292 0.2905 b0077 ilvI -12.73 0.067491 188 -- 240 1 -- 67 acetolactate synthase 3 large subunit  
58 0.00551 0.2905 b0156 erpA -13.52 0.049632 189 -- 214 36 -- 60 iron-sulfur cluster insertion protein  
59 0.005518 0.2905 b3663 yicN -20.80 0.002740 224 -- 256 26 -- 61 DUF1198 family protein  
60 0.005592 0.2905 b3577 yiaM -14.71 0.031138 209 -- 232 41 -- 64 2 3-diketo-L-gulonate TRAP transporter small permease protein  
61 0.005602 0.2905 b1778 msrB -11.92 0.091967 166 -- 177 43 -- 54 methionine sulfoxide reductase B  
62 0.005609 0.2905 b1132 hflD -11.66 0.101792 188 -- 207 42 -- 58 putative lysogenization regulator  
63 0.005616 0.2905 b3261 fis -12.93 0.062484 136 -- 161 37 -- 61 global DNA-binding transcriptional dual regulator  
64 0.005632 0.2905 b3005 exbD -12.96 0.061586 76 -- 96 37 -- 56 membrane spanning protein in TonB-ExbB-ExbD complex  
65 0.005781 0.2905 b0934 ssuC -15.17 0.025944 17 -- 44 19 -- 47 aliphatic sulfonate ABC transporter permease  
66 0.005808 0.2905 b2016 yeeZ -14.47 0.034156 261 -- 292 51 -- 85 putative epimerase  
67 0.005865 0.2905 b4138 dcuA -11.52 0.107256 35 -- 44 73 -- 82 C4-dicarboxylate antiporter  
68 0.00588 0.2905 b4222 ytfP -12.04 0.087961 130 -- 151 48 -- 68 GGCT-like protein  
69 0.006014 0.2917 b3416 malQ -15.44 0.023264 163 -- 216 38 -- 88 4-alpha-glucanotransferase (amylomaltase)  
70 0.006078 0.2917 b1612 fumA -11.08 0.126554 60 -- 88 36 -- 58 fumarate hydratase (fumarase A) aerobic Class I  
71 0.00621 0.2939 b0178 skp -11.69 0.100677 99 -- 118 40 -- 66 periplasmic chaperone  
72 0.00645 0.301 b2125 yehT -9.24 0.246554 1 -- 8 14 -- 21 putative response regulator in two-component system withYehU  
73 0.006758 0.3082 b0073 leuB -14.41 0.035044 252 -- 295 42 -- 89 3-isopropylmalate dehydrogenase NAD(+)-dependent  
74 0.006788 0.3082 b3525 yhjH -16.42 0.015793 272 -- 288 44 -- 60 cyclic-di-GMP phosphodiesterase FlhDC-regulated  
75 0.007199 0.3134 b2167 fruA -15.16 0.026023 90 -- 122 43 -- 84 fused fructose-specific PTS enzymes: IIBcomponent/IIC components  
76 0.007246 0.3134 b4174 hflK -10.43 0.160892 249 -- 292 51 -- 90 modulator for HflB protease specific for phage lambda cII repressor  
77 0.00734 0.3134 b1793 yoaF -12.59 0.071143 233 -- 250 68 -- 86 DUF333 family outer membrane lipoprotein  
78 0.00737 0.3134 b2299 yfcD -10.35 0.165972 38 -- 78 49 -- 90 putative NUDIX hydrolase  
79 0.007454 0.3134 b1912 pgsA -16.66 0.014365 232 -- 294 1 -- 48 phosphatidylglycerophosphate synthetase  
80 0.007461 0.3134 b0925 ldtD -10.36 0.165445 187 -- 206 37 -- 61 murein L D-transpeptidase  
81 0.008086 0.3318 b3114 tdcE -10.99 0.130865 237 -- 290 38 -- 86 pyruvate formate-lyase 4/2-ketobutyrate formate-lyase  
82 0.008223 0.3318 b1654 grxD -11.69 0.100410 189 -- 207 43 -- 58 glutaredoxin-4  
83 0.008249 0.3318 b0183 rnhB -13.04 0.059790 42 -- 55 44 -- 58 ribonuclease HII degrades RNA of DNA-RNA hybrids  
84 0.008296 0.3318 b0892 rarA -13.69 0.046473 183 -- 215 37 -- 66 recombination intermediate processing DNA-dependent ATPase  
85 0.008408 0.3323 b1246 oppD -9.75 0.205761 38 -- 64 37 -- 61 oligopeptide ABC transporter ATPase  
86 0.008505 0.3323 b0879 macB -10.85 0.137944 147 -- 181 15 -- 61 macrolide ABC transporter peremase/ATPase  
87 0.008915 0.3393 b2530 iscS -12.30 0.079567 175 -- 203 40 -- 68 cysteine desulfurase (tRNA sulfurtransferase) PLP-dependent  
88 0.008994 0.3393 b0721 sdhC -13.41 0.051766 40 -- 58 43 -- 60 succinate dehydrogenase membrane subunit binds cytochrome b556  
89 0.009246 0.3393 b1279 yciS -12.08 0.086714 189 -- 204 46 -- 61 DUF1049 family inner membrane protein function unknown  
90 0.009279 0.3393 b0817 mntR -11.60 0.104050 186 -- 211 37 -- 65 Mn(2+)-responsive manganese regulon transcriptional regulator  
91 0.009487 0.3393 b4148 sugE -13.59 0.048204 42 -- 77 12 -- 46 multidrug efflux system protein  
92 0.009626 0.3393 b3811 xerC -15.13 0.026359 57 -- 92 33 -- 64 site-specific tyrosine recombinase  
93 0.009691 0.3393 b2959 yggL -10.23 0.172987 12 -- 59 38 -- 83 DUF469 family protein  
94 0.009954 0.3393 b2208 napF -14.80 0.029998 183 -- 242 1 -- 65 ferredoxin-type protein role in electron transfer to periplasmic nitrate reductase NapA  
95 0.009964 0.3393 b3902 rhaD -16.21 0.017174 243 -- 283 43 -- 89 rhamnulose-1-phosphate aldolase  
96 0.01001 0.3393 b2714 ascG -11.75 0.098239 209 -- 220 53 -- 64 asc operon transcriptional repressor; prpBC operon repressor  
97 0.0101 0.3393 b0192 nlpE -13.07 0.059097 192 -- 230 40 -- 68 lipoprotein involved with copper homeostasis and adhesion  
98 0.01017 0.3393 b1234 rssA -9.29 0.241768 243 -- 258 1 -- 20 putative patatin-like family phospholipase  
99 0.01025 0.3393 b1887 cheW -9.13 0.255901 16 -- 66 38 -- 87 purine-binding chemotaxis protein  
100 0.01027 0.3393 b0661 miaB -11.26 0.118120 162 -- 200 37 -- 86 tRNA-i(6)A37 methylthiotransferase  
101 0.01031 0.3393 b2314 dedD -14.11 0.039362 188 -- 259 13 -- 86 membrane-anchored periplasmic protein involved in septation  
102 0.01034 0.3393 b3128 garD -8.06 0.364232 93 -- 113 5 -- 25 D-galactarate dehydrogenase  
103 0.0104 0.3393 b2711 norW -11.75 0.098250 192 -- 208 42 -- 58 NADH:flavorubredoxin oxidoreductase  
104 0.01058 0.3418 b1475 fdnH -14.92 0.028592 64 -- 96 25 -- 61 formate dehydrogenase-N Fe-S (beta) subunit nitrate-inducible  
105 0.01075 0.3439 b2457 eutM -13.65 0.047053 202 -- 241 1 -- 59 ethanolamine utilization protein putative carboxysome structural protein  
106 0.01088 0.3447 b3543 dppB -11.69 0.100651 144 -- 153 41 -- 50 dipeptide/heme ABC transporter permease  
107 0.0112 0.3489 b3012 dkgA -15.28 0.024842 250 -- 292 50 -- 87 2 5-diketo-D-gluconate reductase A  
108 0.01121 0.3489 b4195 ulaC -11.73 0.099158 148 -- 168 44 -- 62 L-ascorbate-specific enzyme IIA component of PTS  
109 0.01153 0.3513 b0826 moeB -14.46 0.034286 118 -- 145 37 -- 63 molybdopterin synthase sulfurylase  
110 0.01171 0.3513 b0613 citG -15.71 0.020947 180 -- 206 37 -- 61 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase  
111 0.01184 0.3513 b0528 ybcJ -13.49 0.050278 257 -- 272 44 -- 61 ribosome-associated protein; putative RNA-binding protein  
112 0.01186 0.3513 b2021 hisC -13.06 0.059267 35 -- 113 9 -- 85 histidinol-phosphate aminotransferase  
113 0.01187 0.3513 b2901 bglA -10.39 0.163088 124 -- 152 36 -- 60 6-phospho-beta-glucosidase A  
114 0.01202 0.3513 b4348 hsdS -14.85 0.029459 128 -- 148 40 -- 66 specificity determinant for hsdM and hsdR  
115 0.01202 0.3513 b1881 cheZ -13.42 0.051545 178 -- 197 37 -- 61 chemotaxis regulator protein phosphatase for CheY  
116 0.01242 0.3585 b0468 ybaN -14.97 0.028033 230 -- 260 44 -- 78 DUF454 family inner membrane protein  
117 0.0126 0.3585 b2200 ccmB -15.87 0.019639 270 -- 292 1 -- 22 heme export ABC transporter permease  
118 0.01263 0.3585 b0890 ftsK -8.12 0.357469 20 -- 46 38 -- 59 DNA translocase at septal ring sorting daughter chromsomes  
119 0.01272 0.3585 b4336 yjiN -16.20 0.017192 123 -- 159 40 -- 86 zinc-type alcohol dehydrogenase-like protein  
120 0.0128 0.3585 b0445 ybaE -11.02 0.129416 154 -- 176 41 -- 63 putative ABC transporter periplasmic binding protein  
121 0.01302 0.3615 b0966 hspQ -14.11 0.039362 113 -- 134 1 -- 23 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein  
122 0.01331 0.3627 b0078 ilvH -10.99 0.130728 66 -- 84 41 -- 61 acetolactate synthase 3 small subunit valine-sensitive  
123 0.0134 0.3627 b3774 ilvC -11.90 0.092739 9 -- 41 1 -- 25 ketol-acid reductoisomerase NAD(P)-binding  
124 0.01356 0.3627 b2232 ubiG -16.56 0.014945 261 -- 300 44 -- 89 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase  
125 0.0136 0.3627 b3647 ligB -15.20 0.025592 210 -- 279 1 -- 59 DNA ligase NAD(+)-dependent  
126 0.01361 0.3627 b2135 yohC -14.18 0.038247 192 -- 212 38 -- 58 Yip1 family inner membrane protein  
127 0.01387 0.3627 b1224 narG -12.01 0.089072 151 -- 160 37 -- 46 nitrate reductase 1 alpha subunit  
128 0.01397 0.3627 b1656 sodB -9.64 0.214388 197 -- 205 38 -- 46 superoxide dismutase Fe  
129 0.01401 0.3627 b0696 kdpC -11.63 0.102829 282 -- 295 49 -- 63 potassium translocating ATPase subunit C  
130 0.01403 0.3627 b3531 bcsZ -10.44 0.160598 268 -- 291 50 -- 82 endo-1 4-D-glucanase  
131 0.01424 0.3651 b0058 rluA -14.42 0.034831 43 -- 63 40 -- 60 dual specificity 23S rRNA pseudouridine(746) tRNA pseudouridine(32) synthase SAM-dependent  
132 0.01454 0.37 b1083 flgL -7.54 0.428067 272 -- 293 37 -- 57 flagellar hook-filament junction protein  
133 0.0147 0.3709 b3832 rmuC -11.93 0.091595 31 -- 71 21 -- 63 DNA recombination protein  
134 0.01479 0.3709 b1930 yedF -8.51 0.315187 12 -- 23 55 -- 66 putative TusA family sulfurtransferase  
135 0.0153 0.379 b1245 oppC -10.91 0.134968 184 -- 214 42 -- 65 oligopeptide ABC transporter permease  
136 0.01542 0.379 b0428 cyoE -15.83 0.019915 1 -- 35 23 -- 58 protoheme IX farnesyltransferase  
137 0.01545 0.379 b0881 clpS -11.92 0.091960 57 -- 82 37 -- 62 regulatory protein for ClpA substrate specificity  
138 0.01576 0.3813 b3361 fic -10.85 0.137765 79 -- 110 27 -- 60 stationary phase-induced protein putative toxin  
139 0.01578 0.3813 b3386 rpe -11.91 0.092481 276 -- 300 34 -- 60 D-ribulose-5-phosphate 3-epimerase  
140 0.01604 0.3851 b4022 rluF -13.68 0.046602 82 -- 103 39 -- 60 23S rRNA pseudouridine(2604) synthase  
141 0.01639 0.3906 b1585 ynfC -13.03 0.059974 17 -- 62 43 -- 84 UPF0257 family lipoprotein  
142 0.01677 0.3964 b3208 mtgA -9.50 0.224857 30 -- 43 54 -- 67 biosynthetic peptidoglycan transglycosylase  
143 0.01687 0.3964 b3103 yhaH -11.09 0.125996 208 -- 287 3 -- 67 DUF805 family inner membrane protein  
144 0.01729 0.3998 b2913 serA -13.50 0.049990 182 -- 221 55 -- 90 D-3-phosphoglycerate dehydrogenase  
145 0.01736 0.3998 b1607 ydgC -14.56 0.032924 216 -- 264 42 -- 89 GlpM family inner membrane protein  
146 0.01749 0.3998 b1611 fumC -5.84 0.669018 232 -- 244 46 -- 59 fumarate hydratase (fumarase C) aerobic Class II  
147 0.01756 0.3998 b2204 napH -8.83 0.283291 175 -- 212 36 -- 85 ferredoxin-type protein  
148 0.01761 0.3998 b4262 lptG -10.98 0.131149 190 -- 206 42 -- 57 lipopolysaccharide export ABC permease  
149 0.01819 0.4072 b2708 srlQ -10.57 0.153166 157 -- 203 40 -- 61 D-arabinose 5-phosphate isomerase  
150 0.01825 0.4072 b3255 accB -12.43 0.075652 231 -- 278 1 -- 47 acetyl CoA carboxylase BCCP subunit  
151 0.01843 0.4072 b4028 yjbG -13.08 0.058794 282 -- 297 40 -- 55 extracellular polysaccharide export OMA protein  
152 0.0188 0.4072 b0950 pqiA -8.64 0.302533 34 -- 75 1 -- 61 paraquat-inducible SoxRS-regulated inner membrane protein  
153 0.01881 0.4072 b3524 yhjG -16.11 0.017836 180 -- 208 42 -- 68 putative inner membrane-anchored periplasmic AsmA family protein  
154 0.01903 0.4072 b2823 ppdC -17.47 0.010387 242 -- 260 40 -- 58 putative prepilin peptidase-dependent protein  
155 0.01913 0.4072 b2022 hisB -9.38 0.234588 182 -- 245 3 -- 62 histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase  
156 0.0192 0.4072 b0472 recR -11.39 0.112512 68 -- 82 54 -- 68 gap repair protein  
157 0.0194 0.4072 b2720 hycF -4.41 0.858528 100 -- 115 42 -- 59 formate hydrogenlyase complex iron-sulfur protein  
158 0.01943 0.4072 b1941 fliI -13.60 0.048038 205 -- 238 56 -- 85 flagellum-specific ATP synthase  
159 0.02005 0.4072 b1725 yniA -13.71 0.046110 65 -- 84 43 -- 60 fructosamine kinase family protein  
160 0.02006 0.4072 b1205 ychH -13.92 0.042333 252 -- 283 22 -- 60 DUF2583 family putative inner membrane protein  
161 0.02011 0.4072 b2820 recB -12.55 0.072418 202 -- 213 37 -- 48 exonuclease V (RecBCD complex) beta subunit  
162 0.02022 0.4072 b3354 yheU -12.65 0.069641 153 -- 196 51 -- 89 UPF0270 family protein  
163 0.02026 0.4072 b1283 osmB -10.88 0.136535 231 -- 259 38 -- 61 osmotically and stress inducible lipoprotein  
164 0.02028 0.4072 b3295 rpoA -11.98 0.089862 19 -- 43 66 -- 90 RNA polymerase alpha subunit  
165 0.02037 0.4072 b1981 shiA -10.79 0.140980 142 -- 153 44 -- 55 shikimate transporter  
166 0.02064 0.4072 b0429 cyoD -11.77 0.097498 188 -- 206 44 -- 59 cytochrome o ubiquinol oxidase subunit IV  
167 0.02069 0.4072 b2897 sdhE -17.17 0.011699 7 -- 68 8 -- 56 flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair  
168 0.02071 0.4072 b2431 yfeX -10.86 0.137197 192 -- 213 24 -- 58 porphyrinogen oxidase cytoplasmic  
169 0.02092 0.4072 b4471 tdcG -11.09 0.126171 119 -- 152 36 -- 66 L-serine dehydratase 3 anaerobic  
170 0.02096 0.4072 b2283 nuoG -12.68 0.068788 186 -- 195 52 -- 61 NADH:ubiquinone oxidoreductase chain G  
171 0.02102 0.4072 b1747 astA -10.86 0.137376 74 -- 103 34 -- 65 arginine succinyltransferase  
172 0.02103 0.4072 b2043 wcaM -13.25 0.055075 7 -- 38 49 -- 84 colanic acid biosynthesis protein  
173 0.02105 0.4072 b2840 ygeA -11.88 0.093670 213 -- 233 44 -- 67 Asp/Glu_racemase family protein  
174 0.02116 0.4072 b3081 fadH -11.31 0.116093 186 -- 215 37 -- 63 2 4-dienoyl-CoA reductase NADH and FMN-linked  
175 0.02121 0.4072 b4592 cbdX -9.01 0.266875 56 -- 82 33 -- 61 putative cytochrome bd-II oxidase subunit  
176 0.02184 0.4113 b0153 fhuB -8.75 0.291577 190 -- 208 42 -- 58 iron(3+)-hydroxamate import ABC transporter permease  
177 0.02193 0.4113 b4136 dsbD -10.49 0.157561 37 -- 60 42 -- 62 thiol:disulfide interchange protein and activator of DsbC  
178 0.02201 0.4113 b4176 yjeT -16.79 0.013635 217 -- 249 54 -- 87 DUF2065 family protein  
179 0.02212 0.4113 b3317 rplB -11.24 0.118994 191 -- 218 39 -- 68 50S ribosomal subunit protein L2  
180 0.02216 0.4113 b4123 dcuB -12.05 0.087474 186 -- 195 12 -- 21 C4-dicarboxylate transporter anaerobic; DcuS co-sensor  
181 0.0223 0.4113 b3770 ilvE -12.64 0.069830 250 -- 281 37 -- 61 branched-chain amino acid aminotransferase  
182 0.02236 0.4113 b2206 napA -12.10 0.085901 76 -- 101 42 -- 66 nitrate reductase periplasmic large subunit  
183 0.02251 0.4113 b4067 actP -16.98 0.012652 22 -- 44 66 -- 86 acetate transporter  
184 0.02284 0.4113 b2512 bamB -14.63 0.032048 112 -- 136 38 -- 58 BamABCDE complex OM biogenesis lipoprotein  
185 0.02285 0.4113 b0920 elyC -11.60 0.104081 77 -- 89 66 -- 78 envelope biogenesis factor; DUF218 superfamily protein  
186 0.02299 0.4113 b3996 nudC -11.58 0.104830 175 -- 203 40 -- 67 NADH pyrophosphatase  
187 0.023 0.4113 b2311 ubiX -11.39 0.112499 264 -- 277 17 -- 30 3-octaprenyl-4-hydroxybenzoate carboxy-lyase  
188 0.02302 0.4113 b3105 yhaJ -12.66 0.069284 224 -- 245 40 -- 61 LysR family putative transcriptional regulator  
189 0.02313 0.4113 b2438 eutK -12.08 0.086588 220 -- 243 37 -- 62 putative ethanol utilization carboxysome structural protein  
190 0.02395 0.4226 b1189 dadA -13.37 0.052568 210 -- 233 43 -- 66 D-amino acid dehydrogenase  
191 0.0243 0.4226 b4511 ybdZ -10.65 0.148355 2 -- 30 16 -- 45 stimulator of EntF adenylation activity MbtH-like  
192 0.02457 0.4226 b2689 yqaA -16.30 0.016522 258 -- 300 44 -- 85 COG1238 family inner membrane protein  
193 0.02468 0.4226 b0642 leuS -10.30 0.169116 191 -- 213 41 -- 61 leucyl-tRNA synthetase  
194 0.02479 0.4226 b1260 trpA -8.29 0.338830 290 -- 297 41 -- 48 tryptophan synthase alpha subunit  
195 0.0249 0.4226 b1476 fdnI -9.91 0.194140 190 -- 212 37 -- 58 formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible  
196 0.02499 0.4226 b3098 yqjD -9.33 0.238834 67 -- 86 37 -- 57 membrane-anchored ribosome-binding protein  
197 0.02501 0.4226 b2947 gshB -10.62 0.150229 274 -- 293 36 -- 62 glutathione synthetase  
198 0.02503 0.4226 b2544 yphB -11.73 0.099011 68 -- 80 47 -- 61 mutarotase superfamily protein YphB family  
199 0.02505 0.4226 b3794 wecG -14.56 0.032964 62 -- 86 1 -- 25 UDP-N-acetyl-D-mannosaminuronic acid transferase  
200 0.02516 0.4226 b2566 era -10.17 0.177109 195 -- 210 37 -- 61 membrane-associated 16S rRNA-binding GTPase  

Details of Selected Interaction Download Interaction Details 

mRNA

sRNA


		

		

		

		
		

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

			

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
				

					
					
				

				
			

		
 
		
		

		
		

		
		
		
		
Evolutionary conservation of mRNA targets
			(alignment generated with
			Jalview)

		
		
		
Evolutionary conservation of sRNA
			(alignment generated with
			Jalview)

		
		
		

		
	

	
	
	

	
	
	




			 
	





	
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Results are computed with CopraRNA version 2.1.2



		 
	

			





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