| 117 |
0.0126 |
0.3585 |
b2200 |
ccmB |
-15.87 |
0.019639 |
270 -- 292 |
1 -- 22 |
heme export ABC transporter permease |
|
_____________269_____________________293\n_____________|_______________________|\n5'-CGU...CCAAC____U_U__U_____________AAUUACCC-3'\n______________CCGC_G_GG_UCUUCCUGAUUGU\n______________||||_|_||_||||||||||:|:\n______________GGCG_C_CC_AGAAGGACUAGCG\n3'-UUU...CAAGA______U__C_____________-5'\n_____________|______________________|\n_____________23_____________________1\n |
286 -- 292 |
1 -- 7 |
-31.2771 kcal/mol |
7.85543 kcal/mol |
7.55214 kcal/mol |
269 293@LB@ | |@LB@5'-CGU...CCAAC U U U AAUUACCC-3'@LB@ CCGC G GG UCUUCCUGAUUGU@LB@ |||| | || ||||||||||:|:@LB@ GGCG C CC AGAAGGACUAGCG@LB@3'-UUU...CAAGA U C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -31.2771 kcal/mol@LB@Unfolding Energy - mRNA 7.85543 kcal/mol@LB@Unfolding Energy - sRNA 7.55214 kcal/mol@LB@@LB@Position - mRNA 270 -- 292@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 147 |
0.01756 |
0.3998 |
b2204 |
napH |
-8.83 |
0.283291 |
175 -- 212 |
36 -- 85 |
ferredoxin-type protein |
|
_____________174________________________________________________213\n_____________|__________________________________________________|\n5'-CAC...CAUUA_______________________GG___________________A_____AAACG...UCU-3'\n______________CC_GC_UUCGGCUGGCUG___GA____GGAA_CAAUG___GCAA__UCGU\n______________||_||_::|||||||||:___:|____||||_|||||___||||__||||\n______________GG_CG_GGGCCGACCGAU___UU____CCUU_GUUAC___CGUU__AGCA\n______3'-UUUUC__U__U____________UCA__AUGA____C_____ACU____AC____CGAAA...GCG-5'\n_____________|__________________________________________________|\n_____________86_________________________________________________35\n |
183 -- 189 |
69 -- 75 |
-37.9033 kcal/mol |
14.1609 kcal/mol |
14.9108 kcal/mol |
174 213@LB@ | |@LB@5'-CAC...CAUUA GG A AAACG...UCU-3'@LB@ CC GC UUCGGCUGGCUG GA GGAA CAAUG GCAA UCGU@LB@ || || ::|||||||||: :| |||| ||||| |||| ||||@LB@ GG CG GGGCCGACCGAU UU CCUU GUUAC CGUU AGCA@LB@ 3'-UUUUC U U UCA AUGA C ACU AC CGAAA...GCG-5'@LB@ | |@LB@ 86 35@LB@@LB@@LB@Energy -8.83 kcal/mol@LB@Hybridization Energy -37.9033 kcal/mol@LB@Unfolding Energy - mRNA 14.1609 kcal/mol@LB@Unfolding Energy - sRNA 14.9108 kcal/mol@LB@@LB@Position - mRNA 175 -- 212@LB@Position - sRNA 36 -- 85@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 182 |
0.02236 |
0.4113 |
b2206 |
napA |
-12.10 |
0.085901 |
76 -- 101 |
42 -- 66 |
nitrate reductase periplasmic large subunit |
|
_____________75_________________________102\n_____________|__________________________|\n5'-GAC...UGAUU______G_________AAGAC_____AACGC...UUG-3'\n______________GUGGUG_UGGAAGCAG_____AGCGA\n______________||::|:_||||||||:_____|||:|\n______________CAUUAU_ACCUUCGUU_____UCGUU\n3'-UUU...CGAUU______G_________ACAC______ACAGC...GCG-5'\n_____________|__________________________|\n_____________67_________________________41\n |
85 -- 91 |
51 -- 57 |
-24.6932 kcal/mol |
9.28668 kcal/mol |
3.30477 kcal/mol |
75 102@LB@ | |@LB@5'-GAC...UGAUU G AAGAC AACGC...UUG-3'@LB@ GUGGUG UGGAAGCAG AGCGA@LB@ ||::|: ||||||||: |||:|@LB@ CAUUAU ACCUUCGUU UCGUU@LB@3'-UUU...CGAUU G ACAC ACAGC...GCG-5'@LB@ | |@LB@ 67 41@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -24.6932 kcal/mol@LB@Unfolding Energy - mRNA 9.28668 kcal/mol@LB@Unfolding Energy - sRNA 3.30477 kcal/mol@LB@@LB@Position - mRNA 76 -- 101@LB@Position - sRNA 42 -- 66@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 94 |
0.009954 |
0.3393 |
b2208 |
napF |
-14.80 |
0.029998 |
183 -- 242 |
1 -- 65 |
ferredoxin-type protein role in electron transfer to periplasmic nitrate reductase NapA |
|
_____________182____________________________________________________________________243\n_____________|______________________________________________________________________|\n5'-CCA...CGCGU_____A______GU________AG_U__A_____A_____________U_____CAUA__CA________UGGCG...UUC-3'\n______________UAAUG_UGGAAG__CAAUGUGA__A_UG___UGC________UC_CCG_CGGGG____CU__CUGGUCGC\n______________||||:_||||||__||||||||__|_||___|||________||_|||_||:||____||__|||:||||\n______________AUUAU_ACCUUC__GUUACACU__U_AC___ACG________AG_GGC_GCUCC____GA__GACUAGCG\n3'-UUU...GAUUC_____G________________CG_U__AGC___AAAGUCCA__A_________CA____AG________-5'\n_____________|_____________________________________________________________________|\n_____________66____________________________________________________________________1\n |
236 -- 242 |
1 -- 7 |
-47.7557 kcal/mol |
18.8316 kcal/mol |
14.1245 kcal/mol |
182 243@LB@ | |@LB@5'-CCA...CGCGU A GU AG U A A U CAUA CA UGGCG...UUC-3'@LB@ UAAUG UGGAAG CAAUGUGA A UG UGC UC CCG CGGGG CU CUGGUCGC@LB@ ||||: |||||| |||||||| | || ||| || ||| ||:|| || |||:||||@LB@ AUUAU ACCUUC GUUACACU U AC ACG AG GGC GCUCC GA GACUAGCG@LB@3'-UUU...GAUUC G CG U AGC AAAGUCCA A CA AG -5'@LB@ | |@LB@ 66 1@LB@@LB@@LB@Energy -14.80 kcal/mol@LB@Hybridization Energy -47.7557 kcal/mol@LB@Unfolding Energy - mRNA 18.8316 kcal/mol@LB@Unfolding Energy - sRNA 14.1245 kcal/mol@LB@@LB@Position - mRNA 183 -- 242@LB@Position - sRNA 1 -- 65@LB@Position Seed - mRNA 236 -- 242@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 124 |
0.01356 |
0.3627 |
b2232 |
ubiG |
-16.56 |
0.014945 |
261 -- 300 |
44 -- 89 |
bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase |
|
_____________260_____________________________________________300\n_____________|_______________________________________________|\n5'-CUU...AAUUU_______U_____CCC______GG________________________-3'\n______________GAAGCCG_CGCCU___GCUGGU_____GAU_CUGGAAG____GUGAGU\n______________:|||||:_|:||:___|||||:_____:||_|||||||____|||||:\n______________UUUCGGU_GUGGG___CGACCG_____UUA_GACCUUC____CACUCG\n__________3'-U_______C_____C________AUUCA___U_______GUUA______UUACA...GCG-5'\n_____________|________________________________________________|\n_____________90_______________________________________________43\n |
288 -- 294 |
54 -- 60 |
-44.5757 kcal/mol |
13.1093 kcal/mol |
14.9095 kcal/mol |
260 300@LB@ | |@LB@5'-CUU...AAUUU U CCC GG -3'@LB@ GAAGCCG CGCCU GCUGGU GAU CUGGAAG GUGAGU@LB@ :|||||: |:||: |||||: :|| ||||||| |||||:@LB@ UUUCGGU GUGGG CGACCG UUA GACCUUC CACUCG@LB@ 3'-U C C AUUCA U GUUA UUACA...GCG-5'@LB@ | |@LB@ 90 43@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -44.5757 kcal/mol@LB@Unfolding Energy - mRNA 13.1093 kcal/mol@LB@Unfolding Energy - sRNA 14.9095 kcal/mol@LB@@LB@Position - mRNA 261 -- 300@LB@Position - sRNA 44 -- 89@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 170 |
0.02096 |
0.4072 |
b2283 |
nuoG |
-12.68 |
0.068788 |
186 -- 195 |
52 -- 61 |
NADH:ubiquinone oxidoreductase chain G |
|
_____________185________196\n_____________|__________|\n5'-CUG...AGAAA__________UGCUA...UUU-3'\n______________ACUGGAAGCA\n______________||||||||||\n______________UGACCUUCGU\n3'-UUU...CAUUA__________UACAC...GCG-5'\n_____________|__________|\n_____________62_________51\n |
189 -- 195 |
52 -- 58 |
-16.7738 kcal/mol |
1.20687 kcal/mol |
2.88813 kcal/mol |
185 196@LB@ | |@LB@5'-CUG...AGAAA UGCUA...UUU-3'@LB@ ACUGGAAGCA@LB@ ||||||||||@LB@ UGACCUUCGU@LB@3'-UUU...CAUUA UACAC...GCG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -12.68 kcal/mol@LB@Hybridization Energy -16.7738 kcal/mol@LB@Unfolding Energy - mRNA 1.20687 kcal/mol@LB@Unfolding Energy - sRNA 2.88813 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 78 |
0.00737 |
0.3134 |
b2299 |
yfcD |
-10.35 |
0.165972 |
38 -- 78 |
49 -- 90 |
putative NUDIX hydrolase |
|
_____________37__________________________________________79\n_____________|___________________________________________|\n5'-AGA...AUUCC_____G____A_______GA____U_GC_______________ACGUA...AGU-3'\n______________GAAAG_CGGU_AUCCGGC__GUUA_G__AUGCUGGA__UAAUG\n______________:||||_|:|:_|:|||||__|:||_|__||:|||||__:||||\n______________UUUUC_GUCG_UGGGCCG__CGAU_C__UAUGACCU__GUUAC\n___________3'-_____G____________AC____U_AU________UC_____ACUCG...GCG-5'\n______________|__________________________________________|\n______________90_________________________________________48\n |
67 -- 73 |
56 -- 62 |
-41.1069 kcal/mol |
16.14 kcal/mol |
14.6203 kcal/mol |
37 79@LB@ | |@LB@5'-AGA...AUUCC G A GA U GC ACGUA...AGU-3'@LB@ GAAAG CGGU AUCCGGC GUUA G AUGCUGGA UAAUG@LB@ :|||| |:|: |:||||| |:|| | ||:||||| :||||@LB@ UUUUC GUCG UGGGCCG CGAU C UAUGACCU GUUAC@LB@ 3'- G AC U AU UC ACUCG...GCG-5'@LB@ | |@LB@ 90 48@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -41.1069 kcal/mol@LB@Unfolding Energy - mRNA 16.14 kcal/mol@LB@Unfolding Energy - sRNA 14.6203 kcal/mol@LB@@LB@Position - mRNA 38 -- 78@LB@Position - sRNA 49 -- 90@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 187 |
0.023 |
0.4113 |
b2311 |
ubiX |
-11.39 |
0.112499 |
264 -- 277 |
17 -- 30 |
3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
|
_____________263____________278\n_____________|______________|\n5'-UGA...UAUUA________G_____UGUCA...AUC-3'\n______________CAGGUUCU_CGCGA\n______________||||||||_|||||\n______________GUCCAAGA_GCGCU\n3'-UUU...CGAAA________G_____CCCAG...GCG-5'\n_____________|______________|\n_____________31_____________16\n |
265 -- 271 |
23 -- 29 |
-23.8621 kcal/mol |
5.17919 kcal/mol |
7.29042 kcal/mol |
263 278@LB@ | |@LB@5'-UGA...UAUUA G UGUCA...AUC-3'@LB@ CAGGUUCU CGCGA@LB@ |||||||| |||||@LB@ GUCCAAGA GCGCU@LB@3'-UUU...CGAAA G CCCAG...GCG-5'@LB@ | |@LB@ 31 16@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -23.8621 kcal/mol@LB@Unfolding Energy - mRNA 5.17919 kcal/mol@LB@Unfolding Energy - sRNA 7.29042 kcal/mol@LB@@LB@Position - mRNA 264 -- 277@LB@Position - sRNA 17 -- 30@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 101 |
0.01031 |
0.3393 |
b2314 |
dedD |
-14.11 |
0.039362 |
188 -- 259 |
13 -- 86 |
membrane-anchored periplasmic protein involved in septation |
|
_____________187______________________________________________________________________________260\n_____________|________________________________________________________________________________|\n5'-UUG...UUGAC__G__G_GAAG_______________GUUUCA___U____UA_______CGA______________GG_____U______GAUUG...AUU-3'\n______________GC_AG_A____CGG_UGGC_AAGUAA______GAA_CGGU__GUGGGCA___UCGUGCU____GGU____CGC_GGGGGU\n______________||_||_|____|||_||||_||||||______|||_|::|__|||:|||___|||||||____|||____|||_|:||||\n______________CG_UC_U____GCC_ACCG_UUCAUU______CUU_GUUA__CACUCGU___AGCACGA____CCA____GCG_CUCCCA\n_______3'-UUUU__G__G_GG_____G____A______AUGAC____C_____________UAC_______AAGU___AGAG__________GAAGG...GCG-5'\n_____________|________________________________________________________________________________|\n_____________87_______________________________________________________________________________12\n |
238 -- 244 |
33 -- 39 |
-62.0732 kcal/mol |
22.3094 kcal/mol |
25.6538 kcal/mol |
187 260@LB@ | |@LB@5'-UUG...UUGAC G G GAAG GUUUCA U UA CGA GG U GAUUG...AUU-3'@LB@ GC AG A CGG UGGC AAGUAA GAA CGGU GUGGGCA UCGUGCU GGU CGC GGGGGU@LB@ || || | ||| |||| |||||| ||| |::| |||:||| ||||||| ||| ||| |:||||@LB@ CG UC U GCC ACCG UUCAUU CUU GUUA CACUCGU AGCACGA CCA GCG CUCCCA@LB@ 3'-UUUU G G GG G A AUGAC C UAC AAGU AGAG GAAGG...GCG-5'@LB@ | |@LB@ 87 12@LB@@LB@@LB@Energy -14.11 kcal/mol@LB@Hybridization Energy -62.0732 kcal/mol@LB@Unfolding Energy - mRNA 22.3094 kcal/mol@LB@Unfolding Energy - sRNA 25.6538 kcal/mol@LB@@LB@Position - mRNA 188 -- 259@LB@Position - sRNA 13 -- 86@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 168 |
0.02071 |
0.4072 |
b2431 |
yfeX |
-10.86 |
0.137197 |
192 -- 213 |
24 -- 58 |
porphyrinogen oxidase cytoplasmic |
|
_____________191_________________________________214\n_____________|___________________________________|\n5'-AUU...UUUCA_____AA____________________________AGAGU...CCA-3'\n______________GGAGG_________CAAUGUC______UCAGGUUC\n______________|||:|_________|||||||______||||||||\n______________CCUUC_________GUUACAG______AGUCCAAG\n3'-UUU...UAUGA_____GUUACACUC_______CACGAA________AGGCG...GCG-5'\n_____________|___________________________________|\n_____________59__________________________________23\n |
207 -- 213 |
24 -- 30 |
-23.408 kcal/mol |
4.6321 kcal/mol |
7.91302 kcal/mol |
191 214@LB@ | |@LB@5'-AUU...UUUCA AA AGAGU...CCA-3'@LB@ GGAGG CAAUGUC UCAGGUUC@LB@ |||:| ||||||| ||||||||@LB@ CCUUC GUUACAG AGUCCAAG@LB@3'-UUU...UAUGA GUUACACUC CACGAA AGGCG...GCG-5'@LB@ | |@LB@ 59 23@LB@@LB@@LB@Energy -10.86 kcal/mol@LB@Hybridization Energy -23.408 kcal/mol@LB@Unfolding Energy - mRNA 4.6321 kcal/mol@LB@Unfolding Energy - sRNA 7.91302 kcal/mol@LB@@LB@Position - mRNA 192 -- 213@LB@Position - sRNA 24 -- 58@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 24 -- 30@LB@ |
