| 141 |
0.01639 |
0.3906 |
b1585 |
ynfC |
-13.03 |
0.059974 |
17 -- 62 |
43 -- 84 |
UPF0257 family lipoprotein |
|
_____________16______________________________________________63\n_____________|_______________________________________________|\n5'-GCU...GCUCA___G_U______GC_________CC__GG_U_______GG_C_____GAAGC...UCU-3'\n______________CAG_A_CCCGGC__GGC_GAGUA__GC__G_GAGGCGA__G_GAGCA\n______________|||_|_||||||__|||_:||||__:|__|_||:||:|__|_|||||\n______________GUC_U_GGGCCG__CCG_UUCAU__UG__C_CUUCGUU__C_CUCGU\n_____3'-UUUUCG___G________A____A_____UA__A__________A__A_____UACAG...GCG-5'\n_____________|_______________________________________________|\n_____________85______________________________________________42\n |
47 -- 53 |
51 -- 57 |
-45.3683 kcal/mol |
17.4395 kcal/mol |
14.8963 kcal/mol |
16 63@LB@ | |@LB@5'-GCU...GCUCA G U GC CC GG U GG C GAAGC...UCU-3'@LB@ CAG A CCCGGC GGC GAGUA GC G GAGGCGA G GAGCA@LB@ ||| | |||||| ||| :|||| :| | ||:||:| | |||||@LB@ GUC U GGGCCG CCG UUCAU UG C CUUCGUU C CUCGU@LB@ 3'-UUUUCG G A A UA A A A UACAG...GCG-5'@LB@ | |@LB@ 85 42@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -45.3683 kcal/mol@LB@Unfolding Energy - mRNA 17.4395 kcal/mol@LB@Unfolding Energy - sRNA 14.8963 kcal/mol@LB@@LB@Position - mRNA 17 -- 62@LB@Position - sRNA 43 -- 84@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 145 |
0.01736 |
0.3998 |
b1607 |
ydgC |
-14.56 |
0.032924 |
216 -- 264 |
42 -- 89 |
GlpM family inner membrane protein |
|
_____________215__________________________________________________265\n_____________|____________________________________________________|\n5'-AUG...UAAUC________________GC______________UU__U_______UUU_____AAACG...CAC-3'\n______________AAAGCC_GCGCUCGGU__GCU_GGUAGUGCUG__GA__UGGUGU___AGCAA\n______________||||||_||:|:|||:__|||_:|||:|:|||__||__:::|||___|||||\n______________UUUCGG_CGUGGGCCG__CGA_UCAUUAUGAC__CU__GUUACA___UCGUU\n__________3'-U______U_________AC___U______________UC______C_______ACAGC...GCG-5'\n_____________|____________________________________________________|\n_____________90___________________________________________________41\n |
239 -- 245 |
58 -- 64 |
-48.2837 kcal/mol |
18.8097 kcal/mol |
14.9103 kcal/mol |
215 265@LB@ | |@LB@5'-AUG...UAAUC GC UU U UUU AAACG...CAC-3'@LB@ AAAGCC GCGCUCGGU GCU GGUAGUGCUG GA UGGUGU AGCAA@LB@ |||||| ||:|:|||: ||| :|||:|:||| || :::||| |||||@LB@ UUUCGG CGUGGGCCG CGA UCAUUAUGAC CU GUUACA UCGUU@LB@ 3'-U U AC U UC C ACAGC...GCG-5'@LB@ | |@LB@ 90 41@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -48.2837 kcal/mol@LB@Unfolding Energy - mRNA 18.8097 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 216 -- 264@LB@Position - sRNA 42 -- 89@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 146 |
0.01749 |
0.3998 |
b1611 |
fumC |
-5.84 |
0.669018 |
232 -- 244 |
46 -- 59 |
fumarate hydratase (fumarase C) aerobic Class II |
|
_____________231____________245\n_____________|______________|\n5'-AGG...UUCGA______________UGUCC...UCC-3'\n______________UGGGGGCGAU_UGA\n______________|||::||:||_|||\n______________ACCUUCGUUA_ACU\n3'-UUU...UUAUG__________C___CGUUA...GCG-5'\n_____________|______________|\n_____________60_____________45\n |
233 -- 239 |
52 -- 58 |
-14.3864 kcal/mol |
5.35896 kcal/mol |
3.18972 kcal/mol |
231 245@LB@ | |@LB@5'-AGG...UUCGA UGUCC...UCC-3'@LB@ UGGGGGCGAU UGA@LB@ |||::||:|| |||@LB@ ACCUUCGUUA ACU@LB@3'-UUU...UUAUG C CGUUA...GCG-5'@LB@ | |@LB@ 60 45@LB@@LB@@LB@Energy -5.84 kcal/mol@LB@Hybridization Energy -14.3864 kcal/mol@LB@Unfolding Energy - mRNA 5.35896 kcal/mol@LB@Unfolding Energy - sRNA 3.18972 kcal/mol@LB@@LB@Position - mRNA 232 -- 244@LB@Position - sRNA 46 -- 59@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 70 |
0.006078 |
0.2917 |
b1612 |
fumA |
-11.08 |
0.126554 |
60 -- 88 |
36 -- 58 |
fumarate hydratase (fumarase A) aerobic Class I |
|
_____________59_____________________________89\n_____________|______________________________|\n5'-AUG...CUACG________CC_______CGCAA__A_____ACUAG...AAU-3'\n______________GGAAGUAA__UG_GAGC_____AA_GUCGU\n______________|||||:||__||_||||_____||_|||||\n______________CCUUCGUU__AC_CUCG_____UU_CAGCA\n3'-UUU...UAUGA____________A___________A_____CGAAA...GCG-5'\n_____________|______________________________|\n_____________59_____________________________35\n |
61 -- 67 |
51 -- 57 |
-19.4215 kcal/mol |
5.11518 kcal/mol |
3.22706 kcal/mol |
59 89@LB@ | |@LB@5'-AUG...CUACG CC CGCAA A ACUAG...AAU-3'@LB@ GGAAGUAA UG GAGC AA GUCGU@LB@ |||||:|| || |||| || |||||@LB@ CCUUCGUU AC CUCG UU CAGCA@LB@3'-UUU...UAUGA A A CGAAA...GCG-5'@LB@ | |@LB@ 59 35@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -19.4215 kcal/mol@LB@Unfolding Energy - mRNA 5.11518 kcal/mol@LB@Unfolding Energy - sRNA 3.22706 kcal/mol@LB@@LB@Position - mRNA 60 -- 88@LB@Position - sRNA 36 -- 58@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 9 |
0.0004314 |
0.161 |
b1647 |
ydhF |
-17.39 |
0.010703 |
25 -- 48 |
37 -- 61 |
putative oxidoreductase |
|
_____________24________________________49\n_____________|_________________________|\n5'-UUC...UUUUA___________AA_________G__AAAAA...AGC-3'\n______________ACUGGAA_UAA__UGAGCGAUG_CG\n______________|||||||_:||__|||||:|||_||\n______________UGACCUU_GUU__ACUCGUUAC_GC\n3'-UUU...CAUUA_______C___AC_________A__ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
39 -- 45 |
40 -- 46 |
-25.2966 kcal/mol |
4.60014 kcal/mol |
3.30158 kcal/mol |
24 49@LB@ | |@LB@5'-UUC...UUUUA AA G AAAAA...AGC-3'@LB@ ACUGGAA UAA UGAGCGAUG CG@LB@ ||||||| :|| |||||:||| ||@LB@ UGACCUU GUU ACUCGUUAC GC@LB@3'-UUU...CAUUA C AC A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -17.39 kcal/mol@LB@Hybridization Energy -25.2966 kcal/mol@LB@Unfolding Energy - mRNA 4.60014 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 25 -- 48@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 82 |
0.008223 |
0.3318 |
b1654 |
grxD |
-11.69 |
0.100410 |
189 -- 207 |
43 -- 58 |
glutaredoxin-4 |
|
_____________188_________________208\n_____________|___________________|\n5'-AAA...UUUGA________GACAA______CCACU...CUG-3'\n______________GGAAGCAA_____UGAGCA\n______________||||||||_____||||||\n______________CCUUCGUU_____ACUCGU\n3'-UUU...UAUGA________AC_________UACAG...GCG-5'\n_____________|___________________|\n_____________59__________________42\n |
190 -- 196 |
51 -- 57 |
-19.1647 kcal/mol |
4.26252 kcal/mol |
3.20949 kcal/mol |
188 208@LB@ | |@LB@5'-AAA...UUUGA GACAA CCACU...CUG-3'@LB@ GGAAGCAA UGAGCA@LB@ |||||||| ||||||@LB@ CCUUCGUU ACUCGU@LB@3'-UUU...UAUGA AC UACAG...GCG-5'@LB@ | |@LB@ 59 42@LB@@LB@@LB@Energy -11.69 kcal/mol@LB@Hybridization Energy -19.1647 kcal/mol@LB@Unfolding Energy - mRNA 4.26252 kcal/mol@LB@Unfolding Energy - sRNA 3.20949 kcal/mol@LB@@LB@Position - mRNA 189 -- 207@LB@Position - sRNA 43 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 128 |
0.01397 |
0.3627 |
b1656 |
sodB |
-9.64 |
0.214388 |
197 -- 205 |
38 -- 46 |
superoxide dismutase Fe |
|
_____________196_______206\n_____________|_________|\n5'-UCU...AGAGU_________AUUCG...AGA-3'\n______________AGCAAUGUC\n______________|||||||||\n______________UCGUUACAG\n3'-UUU...UACAC_________CACGA...GCG-5'\n_____________|_________|\n_____________47________37\n |
199 -- 205 |
38 -- 44 |
-13.5738 kcal/mol |
2.78264 kcal/mol |
1.15511 kcal/mol |
196 206@LB@ | |@LB@5'-UCU...AGAGU AUUCG...AGA-3'@LB@ AGCAAUGUC@LB@ |||||||||@LB@ UCGUUACAG@LB@3'-UUU...UACAC CACGA...GCG-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -9.64 kcal/mol@LB@Hybridization Energy -13.5738 kcal/mol@LB@Unfolding Energy - mRNA 2.78264 kcal/mol@LB@Unfolding Energy - sRNA 1.15511 kcal/mol@LB@@LB@Position - mRNA 197 -- 205@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 35 |
0.003076 |
0.2776 |
b1678 |
ldtE |
-14.38 |
0.035403 |
2 -- 13 |
49 -- 60 |
murein L D-transpeptidase |
|
_____________1____________14\n_____________|____________|\n__________5'-U____________AUUCG...GCC-3'\n______________CUGGAAGCGAUG\n______________||||||||:|||\n______________GACCUUCGUUAC\n3'-UUU...AUUAU____________ACUCG...GCG-5'\n_____________|____________|\n_____________61___________48\n |
7 -- 13 |
49 -- 55 |
-19.7187 kcal/mol |
2.33169 kcal/mol |
3.00762 kcal/mol |
1 14@LB@ | |@LB@ 5'-U AUUCG...GCC-3'@LB@ CUGGAAGCGAUG@LB@ ||||||||:|||@LB@ GACCUUCGUUAC@LB@3'-UUU...AUUAU ACUCG...GCG-5'@LB@ | |@LB@ 61 48@LB@@LB@@LB@Energy -14.38 kcal/mol@LB@Hybridization Energy -19.7187 kcal/mol@LB@Unfolding Energy - mRNA 2.33169 kcal/mol@LB@Unfolding Energy - sRNA 3.00762 kcal/mol@LB@@LB@Position - mRNA 2 -- 13@LB@Position - sRNA 49 -- 60@LB@Position Seed - mRNA 7 -- 13@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 2 |
1.064e-05 |
0.01787 |
b1683 |
sufB |
-21.37 |
0.002185 |
208 -- 233 |
38 -- 66 |
component of SufBCD Fe-S cluster assembly scaffold |
|
_____________207___________________________234\n_____________|_____________________________|\n5'-GUU...GUCUC________________C____________AAAAC...AGC-3'\n______________GUAAUACU_GAAGCAA__UGA_CGAUGUC\n______________||||||||_|||||||__|||_|:|||||\n______________CAUUAUGA_CUUCGUU__ACU_GUUACAG\n3'-UUU...CGAUU________C_______AC___C_______CACGA...GCG-5'\n_____________|_____________________________|\n_____________67____________________________37\n |
227 -- 233 |
38 -- 44 |
-29.4313 kcal/mol |
4.7571 kcal/mol |
3.30527 kcal/mol |
207 234@LB@ | |@LB@5'-GUU...GUCUC C AAAAC...AGC-3'@LB@ GUAAUACU GAAGCAA UGA CGAUGUC@LB@ |||||||| ||||||| ||| |:|||||@LB@ CAUUAUGA CUUCGUU ACU GUUACAG@LB@3'-UUU...CGAUU C AC C CACGA...GCG-5'@LB@ | |@LB@ 67 37@LB@@LB@@LB@Energy -21.37 kcal/mol@LB@Hybridization Energy -29.4313 kcal/mol@LB@Unfolding Energy - mRNA 4.7571 kcal/mol@LB@Unfolding Energy - sRNA 3.30527 kcal/mol@LB@@LB@Position - mRNA 208 -- 233@LB@Position - sRNA 38 -- 66@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 159 |
0.02005 |
0.4072 |
b1725 |
yniA |
-13.71 |
0.046110 |
65 -- 84 |
43 -- 60 |
fructosamine kinase family protein |
|
_____________64___________________85\n_____________|____________________|\n5'-GAG...ACGAC_______G____GAAU____ACAGA...GGC-3'\n______________CUGGGAG_AAUG____AGCA\n______________||||:||_||||____||||\n______________GACCUUC_UUAC____UCGU\n3'-UUU...AUUAU_______G____AC______UACAG...GCG-5'\n_____________|____________________|\n_____________61___________________42\n |
65 -- 71 |
54 -- 60 |
-19.5513 kcal/mol |
2.54567 kcal/mol |
3.29917 kcal/mol |
64 85@LB@ | |@LB@5'-GAG...ACGAC G GAAU ACAGA...GGC-3'@LB@ CUGGGAG AAUG AGCA@LB@ ||||:|| |||| ||||@LB@ GACCUUC UUAC UCGU@LB@3'-UUU...AUUAU G AC UACAG...GCG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -13.71 kcal/mol@LB@Hybridization Energy -19.5513 kcal/mol@LB@Unfolding Energy - mRNA 2.54567 kcal/mol@LB@Unfolding Energy - sRNA 3.29917 kcal/mol@LB@@LB@Position - mRNA 65 -- 84@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 54 -- 60@LB@ |
