| 52 |
0.004779 |
0.2905 |
b4122 |
fumB |
-12.31 |
0.079331 |
182 -- 204 |
48 -- 68 |
anaerobic class I fumarate hydratase (fumarase B) |
|
_____________181_____________________205\n_____________|_______________________|\n5'-UCC...AUACA____UACAG_________U____CAAAC...ACU-3'\n______________GAGU_____GCUGGAAGC_AUGU\n______________:|||_____:||||||||_||||\n______________UUCA_____UGACCUUCG_UACA\n3'-UUU...ACCGA____UUA___________U____CUCGU...GCG-5'\n_____________|_______________________|\n_____________69______________________47\n |
193 -- 199 |
53 -- 59 |
-20.6346 kcal/mol |
5.29507 kcal/mol |
3.03052 kcal/mol |
181 205@LB@ | |@LB@5'-UCC...AUACA UACAG U CAAAC...ACU-3'@LB@ GAGU GCUGGAAGC AUGU@LB@ :||| :|||||||| ||||@LB@ UUCA UGACCUUCG UACA@LB@3'-UUU...ACCGA UUA U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.31 kcal/mol@LB@Hybridization Energy -20.6346 kcal/mol@LB@Unfolding Energy - mRNA 5.29507 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 182 -- 204@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 180 |
0.02216 |
0.4113 |
b4123 |
dcuB |
-12.05 |
0.087474 |
186 -- 195 |
12 -- 21 |
C4-dicarboxylate transporter anaerobic; DcuS co-sensor |
|
_____________185________196\n_____________|__________|\n5'-UCU...AUUAU__________CACAC...UGG-3'\n______________CGCGAGGGUU\n______________|||||||||:\n______________GCGCUCCCAG\n3'-UUU...AAGAG__________AAGGA...GCG-5'\n_____________|__________|\n_____________22_________11\n |
189 -- 195 |
12 -- 18 |
-19.9032 kcal/mol |
3.47865 kcal/mol |
4.37028 kcal/mol |
185 196@LB@ | |@LB@5'-UCU...AUUAU CACAC...UGG-3'@LB@ CGCGAGGGUU@LB@ |||||||||:@LB@ GCGCUCCCAG@LB@3'-UUU...AAGAG AAGGA...GCG-5'@LB@ | |@LB@ 22 11@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -19.9032 kcal/mol@LB@Unfolding Energy - mRNA 3.47865 kcal/mol@LB@Unfolding Energy - sRNA 4.37028 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 12 -- 21@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 177 |
0.02193 |
0.4113 |
b4136 |
dsbD |
-10.49 |
0.157561 |
37 -- 60 |
42 -- 62 |
thiol:disulfide interchange protein and activator of DsbC |
|
_____________36_______________________61\n_____________|________________________|\n5'-UGC...UCUAU_______AA_____GCUG______GAAUA...CGG-3'\n______________UACUGGG__GGUAA____GAGCAA\n______________||||||:__:|:||____||||||\n______________AUGACCU__UCGUU____CUCGUU\n3'-UUU...UCAUU______________ACA_______ACAGC...GCG-5'\n_____________|________________________|\n_____________63_______________________41\n |
37 -- 43 |
56 -- 62 |
-20.3754 kcal/mol |
6.58529 kcal/mol |
3.30151 kcal/mol |
36 61@LB@ | |@LB@5'-UGC...UCUAU AA GCUG GAAUA...CGG-3'@LB@ UACUGGG GGUAA GAGCAA@LB@ ||||||: :|:|| ||||||@LB@ AUGACCU UCGUU CUCGUU@LB@3'-UUU...UCAUU ACA ACAGC...GCG-5'@LB@ | |@LB@ 63 41@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -20.3754 kcal/mol@LB@Unfolding Energy - mRNA 6.58529 kcal/mol@LB@Unfolding Energy - sRNA 3.30151 kcal/mol@LB@@LB@Position - mRNA 37 -- 60@LB@Position - sRNA 42 -- 62@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 67 |
0.005865 |
0.2905 |
b4138 |
dcuA |
-11.52 |
0.107256 |
35 -- 44 |
73 -- 82 |
C4-dicarboxylate antiporter |
|
_____________34_________45\n_____________|__________|\n5'-AAC...CUGAU__________UACAA...UGG-3'\n______________GCACCCGGCU\n______________||||||||||\n______________CGUGGGCCGA\n___3'-UUUUCGGU__________CCGAU...GCG-5'\n_____________|__________|\n_____________83_________72\n |
38 -- 44 |
73 -- 79 |
-22.0144 kcal/mol |
2.69052 kcal/mol |
7.80512 kcal/mol |
34 45@LB@ | |@LB@5'-AAC...CUGAU UACAA...UGG-3'@LB@ GCACCCGGCU@LB@ ||||||||||@LB@ CGUGGGCCGA@LB@ 3'-UUUUCGGU CCGAU...GCG-5'@LB@ | |@LB@ 83 72@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -22.0144 kcal/mol@LB@Unfolding Energy - mRNA 2.69052 kcal/mol@LB@Unfolding Energy - sRNA 7.80512 kcal/mol@LB@@LB@Position - mRNA 35 -- 44@LB@Position - sRNA 73 -- 82@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 91 |
0.009487 |
0.3393 |
b4148 |
sugE |
-13.59 |
0.048204 |
42 -- 77 |
12 -- 46 |
multidrug efflux system protein |
|
_____________41___________________________________78\n_____________|____________________________________|\n5'-CGC...ACGAC___U_________CG__UGUU__________UA___ACAAA...UUA-3'\n______________AGC_GUGUCGUGC__UU____UUUUCUGCGA__GUC\n______________|||_:||||||||__|:____||:||:||||__|||\n______________UCG_UACAGCACG__AG____AAGAGGCGCU__CAG\n3'-UUU...UACAC___U_________AA__UCC___________CC___AAGGA...GCG-5'\n_____________|____________________________________|\n_____________47___________________________________11\n |
66 -- 72 |
17 -- 23 |
-35.5696 kcal/mol |
9.46718 kcal/mol |
12.5096 kcal/mol |
41 78@LB@ | |@LB@5'-CGC...ACGAC U CG UGUU UA ACAAA...UUA-3'@LB@ AGC GUGUCGUGC UU UUUUCUGCGA GUC@LB@ ||| :|||||||| |: ||:||:|||| |||@LB@ UCG UACAGCACG AG AAGAGGCGCU CAG@LB@3'-UUU...UACAC U AA UCC CC AAGGA...GCG-5'@LB@ | |@LB@ 47 11@LB@@LB@@LB@Energy -13.59 kcal/mol@LB@Hybridization Energy -35.5696 kcal/mol@LB@Unfolding Energy - mRNA 9.46718 kcal/mol@LB@Unfolding Energy - sRNA 12.5096 kcal/mol@LB@@LB@Position - mRNA 42 -- 77@LB@Position - sRNA 12 -- 46@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 11 |
0.000669 |
0.2043 |
b4154 |
frdA |
-13.85 |
0.043591 |
184 -- 204 |
34 -- 53 |
anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
|
_____________183___________________205\n_____________|_____________________|\n5'-UAA...AAAAA____CUG___G__________AAACC...UCG-3'\n______________CAAU___GAG_AAUGUCGUGC\n______________||||___|||_||||||||||\n______________GUUA___CUC_UUACAGCACG\n3'-UUU...CCUUC____CA____G__________AAAGU...GCG-5'\n_____________|_____________________|\n_____________54____________________33\n |
198 -- 204 |
34 -- 40 |
-24.005 kcal/mol |
3.86794 kcal/mol |
6.28724 kcal/mol |
183 205@LB@ | |@LB@5'-UAA...AAAAA CUG G AAACC...UCG-3'@LB@ CAAU GAG AAUGUCGUGC@LB@ |||| ||| ||||||||||@LB@ GUUA CUC UUACAGCACG@LB@3'-UUU...CCUUC CA G AAAGU...GCG-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -13.85 kcal/mol@LB@Hybridization Energy -24.005 kcal/mol@LB@Unfolding Energy - mRNA 3.86794 kcal/mol@LB@Unfolding Energy - sRNA 6.28724 kcal/mol@LB@@LB@Position - mRNA 184 -- 204@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 76 |
0.007246 |
0.3134 |
b4174 |
hflK |
-10.43 |
0.160892 |
249 -- 292 |
51 -- 90 |
modulator for HflB protease specific for phage lambda cII repressor |
|
_____________248_____________________________________________293\n_____________|_______________________________________________|\n5'-AGA...CGUGG__________AA___________AACUC____GGAAA______A___AGGCGGUC-3'\n______________GGAAG_CAGC__ACCUGGC_GGC_____UGAG______UGGAA_CAA\n______________::|||_||||__|||:|||_|||_____|:||______|||||_|||\n______________UUUUC_GUCG__UGGGCCG_CCG_____AUUC______ACCUU_GUU\n___________3'-_____G_____________A____________AUUAUG_____C___ACACU...GCG-5'\n______________|______________________________________________|\n______________90_____________________________________________50\n |
260 -- 266 |
74 -- 80 |
-34.0568 kcal/mol |
9.12339 kcal/mol |
14.5017 kcal/mol |
248 293@LB@ | |@LB@5'-AGA...CGUGG AA AACUC GGAAA A AGGCGGUC-3'@LB@ GGAAG CAGC ACCUGGC GGC UGAG UGGAA CAA@LB@ ::||| |||| |||:||| ||| |:|| ||||| |||@LB@ UUUUC GUCG UGGGCCG CCG AUUC ACCUU GUU@LB@ 3'- G A AUUAUG C ACACU...GCG-5'@LB@ | |@LB@ 90 50@LB@@LB@@LB@Energy -10.43 kcal/mol@LB@Hybridization Energy -34.0568 kcal/mol@LB@Unfolding Energy - mRNA 9.12339 kcal/mol@LB@Unfolding Energy - sRNA 14.5017 kcal/mol@LB@@LB@Position - mRNA 249 -- 292@LB@Position - sRNA 51 -- 90@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 178 |
0.02201 |
0.4113 |
b4176 |
yjeT |
-16.79 |
0.013635 |
217 -- 249 |
54 -- 87 |
DUF2065 family protein |
|
_____________216_________________________________250\n_____________|___________________________________|\n5'-UCA...AAUCU____________CC______U______________GUUUA...CGA-3'\n______________GGCUGGCGCUUG__CUGGUU___UGGUACUGGAAG\n______________:||::||:|::|__||||:|___|::|||||||||\n______________UCGGUCGUGGGC__GACCGA___AUUAUGACCUUC\n________3'-UUU____________C_______UUC____________GUUAC...GCG-5'\n_____________|___________________________________|\n_____________88__________________________________53\n |
243 -- 249 |
54 -- 60 |
-41.1583 kcal/mol |
10.0538 kcal/mol |
14.3172 kcal/mol |
216 250@LB@ | |@LB@5'-UCA...AAUCU CC U GUUUA...CGA-3'@LB@ GGCUGGCGCUUG CUGGUU UGGUACUGGAAG@LB@ :||::||:|::| ||||:| |::|||||||||@LB@ UCGGUCGUGGGC GACCGA AUUAUGACCUUC@LB@ 3'-UUU C UUC GUUAC...GCG-5'@LB@ | |@LB@ 88 53@LB@@LB@@LB@Energy -16.79 kcal/mol@LB@Hybridization Energy -41.1583 kcal/mol@LB@Unfolding Energy - mRNA 10.0538 kcal/mol@LB@Unfolding Energy - sRNA 14.3172 kcal/mol@LB@@LB@Position - mRNA 217 -- 249@LB@Position - sRNA 54 -- 87@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 108 |
0.01121 |
0.3489 |
b4195 |
ulaC |
-11.73 |
0.099158 |
148 -- 168 |
44 -- 62 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________147___________________169\n_____________|_____________________|\n5'-GCG...GAAAC_____________CAAA____AUUUC...UGG-3'\n______________UGCUGGAAGUGAU____GAGC\n______________|:|||||||::||____||||\n______________AUGACCUUCGUUA____CUCG\n3'-UUU...UCAUU_____________CA______UUACA...GCG-5'\n_____________|_____________________|\n_____________63____________________43\n |
152 -- 158 |
52 -- 58 |
-21.7326 kcal/mol |
6.70621 kcal/mol |
3.30069 kcal/mol |
147 169@LB@ | |@LB@5'-GCG...GAAAC CAAA AUUUC...UGG-3'@LB@ UGCUGGAAGUGAU GAGC@LB@ |:|||||||::|| ||||@LB@ AUGACCUUCGUUA CUCG@LB@3'-UUU...UCAUU CA UUACA...GCG-5'@LB@ | |@LB@ 63 43@LB@@LB@@LB@Energy -11.73 kcal/mol@LB@Hybridization Energy -21.7326 kcal/mol@LB@Unfolding Energy - mRNA 6.70621 kcal/mol@LB@Unfolding Energy - sRNA 3.30069 kcal/mol@LB@@LB@Position - mRNA 148 -- 168@LB@Position - sRNA 44 -- 62@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 68 |
0.00588 |
0.2905 |
b4222 |
ytfP |
-12.04 |
0.087961 |
130 -- 151 |
48 -- 68 |
GGCT-like protein |
|
_____________129____________________152\n_____________|______________________|\n5'-ACC...UGCCU___CU___U________C____CUGGU...ACC-3'\n______________AAG__AUA_CUGGAAGC_GUGU\n______________|||__|||_||||||||_:|||\n______________UUC__UAU_GACCUUCG_UACA\n3'-UUU...ACCGA___AU____________U____CUCGU...GCG-5'\n_____________|______________________|\n_____________69_____________________47\n |
140 -- 146 |
53 -- 59 |
-18.8807 kcal/mol |
3.81035 kcal/mol |
3.03052 kcal/mol |
129 152@LB@ | |@LB@5'-ACC...UGCCU CU U C CUGGU...ACC-3'@LB@ AAG AUA CUGGAAGC GUGU@LB@ ||| ||| |||||||| :|||@LB@ UUC UAU GACCUUCG UACA@LB@3'-UUU...ACCGA AU U CUCGU...GCG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -18.8807 kcal/mol@LB@Unfolding Energy - mRNA 3.81035 kcal/mol@LB@Unfolding Energy - sRNA 3.03052 kcal/mol@LB@@LB@Position - mRNA 130 -- 151@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 53 -- 59@LB@ |
