| 158 |
0.01943 |
0.4072 |
b1941 |
fliI |
-13.60 |
0.048038 |
205 -- 238 |
56 -- 85 |
flagellum-specific ATP synthase |
|
_____________204_________________________________239\n_____________|___________________________________|\n5'-CUG...AAUGA___C_______ACUC_________CCAC_______UAACU...GCG-3'\n______________CCA_GCGCCUG____GCUGGCUAA_____GCUGGA\n______________|||_||:||:|____|||||||||_____:|||||\n______________GGU_CGUGGGC____CGACCGAUU_____UGACCU\n______3'-UUUUC________________________CAUUA______UCGUU...GCG-5'\n_____________|___________________________________|\n_____________86__________________________________55\n |
221 -- 227 |
68 -- 74 |
-38.0474 kcal/mol |
10.8324 kcal/mol |
13.6134 kcal/mol |
204 239@LB@ | |@LB@5'-CUG...AAUGA C ACUC CCAC UAACU...GCG-3'@LB@ CCA GCGCCUG GCUGGCUAA GCUGGA@LB@ ||| ||:||:| ||||||||| :|||||@LB@ GGU CGUGGGC CGACCGAUU UGACCU@LB@ 3'-UUUUC CAUUA UCGUU...GCG-5'@LB@ | |@LB@ 86 55@LB@@LB@@LB@Energy -13.60 kcal/mol@LB@Hybridization Energy -38.0474 kcal/mol@LB@Unfolding Energy - mRNA 10.8324 kcal/mol@LB@Unfolding Energy - sRNA 13.6134 kcal/mol@LB@@LB@Position - mRNA 205 -- 238@LB@Position - sRNA 56 -- 85@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 165 |
0.02037 |
0.4072 |
b1981 |
shiA |
-10.79 |
0.140980 |
142 -- 153 |
44 -- 55 |
shikimate transporter |
|
_____________141__________154\n_____________|____________|\n5'-CUG...UCGAC____________UACCU...UCG-3'\n______________GGCAAUGUGAGU\n______________:||||||||||:\n______________UCGUUACACUCG\n3'-UUU...GACCU____________UUACA...GCG-5'\n_____________|____________|\n_____________56___________43\n |
147 -- 153 |
44 -- 50 |
-18.9093 kcal/mol |
4.9192 kcal/mol |
3.20048 kcal/mol |
141 154@LB@ | |@LB@5'-CUG...UCGAC UACCU...UCG-3'@LB@ GGCAAUGUGAGU@LB@ :||||||||||:@LB@ UCGUUACACUCG@LB@3'-UUU...GACCU UUACA...GCG-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -10.79 kcal/mol@LB@Hybridization Energy -18.9093 kcal/mol@LB@Unfolding Energy - mRNA 4.9192 kcal/mol@LB@Unfolding Energy - sRNA 3.20048 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 22 |
0.001794 |
0.2682 |
b1992 |
cobS |
-11.39 |
0.112398 |
162 -- 208 |
42 -- 83 |
cobalamin synthase |
|
_____________161________________________________________________209\n_____________|__________________________________________________|\n5'-GAG...AAUGA______________GGUUUCG______________AAAUCAAA_______AUUAU...GUA-3'\n______________AGUAU__GGCUGGU_______GGUAUUGG_AGUAA________UGAGUAA\n______________||:|:__||||||:_______::||:|||_||:||________||||:||\n______________UCGUG__CCGACCG_______UUAUGACC_UCGUU________ACUCGUU\n____3'-UUUUCGG_____GG_______AUUCA__________U_____AC_____________ACAGC...GCG-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________41\n |
202 -- 208 |
42 -- 48 |
-33.2748 kcal/mol |
6.99193 kcal/mol |
14.8879 kcal/mol |
161 209@LB@ | |@LB@5'-GAG...AAUGA GGUUUCG AAAUCAAA AUUAU...GUA-3'@LB@ AGUAU GGCUGGU GGUAUUGG AGUAA UGAGUAA@LB@ ||:|: ||||||: ::||:||| ||:|| ||||:||@LB@ UCGUG CCGACCG UUAUGACC UCGUU ACUCGUU@LB@ 3'-UUUUCGG GG AUUCA U AC ACAGC...GCG-5'@LB@ | |@LB@ 84 41@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -33.2748 kcal/mol@LB@Unfolding Energy - mRNA 6.99193 kcal/mol@LB@Unfolding Energy - sRNA 14.8879 kcal/mol@LB@@LB@Position - mRNA 162 -- 208@LB@Position - sRNA 42 -- 83@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 66 |
0.005808 |
0.2905 |
b2016 |
yeeZ |
-14.47 |
0.034156 |
261 -- 292 |
51 -- 85 |
putative epimerase |
|
_____________260_________________________________293\n_____________|___________________________________|\n5'-ACC...CACUU_______GA____________C____C________AACCACAC-3'\n______________UCAGCGC__GGCUGGC_AAGU___AC_GGGAGUAA\n______________:||||:|__|||||||_||||___||_||:||:||\n______________GGUCGUG__CCGACCG_UUCA___UG_CCUUCGUU\n______3'-UUUUC_______GG_______A____UUA__A________ACACU...GCG-5'\n_____________|___________________________________|\n_____________86__________________________________50\n |
286 -- 292 |
51 -- 57 |
-40.5662 kcal/mol |
11.5945 kcal/mol |
14.5012 kcal/mol |
260 293@LB@ | |@LB@5'-ACC...CACUU GA C C AACCACAC-3'@LB@ UCAGCGC GGCUGGC AAGU AC GGGAGUAA@LB@ :||||:| ||||||| |||| || ||:||:||@LB@ GGUCGUG CCGACCG UUCA UG CCUUCGUU@LB@ 3'-UUUUC GG A UUA A ACACU...GCG-5'@LB@ | |@LB@ 86 50@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -40.5662 kcal/mol@LB@Unfolding Energy - mRNA 11.5945 kcal/mol@LB@Unfolding Energy - sRNA 14.5012 kcal/mol@LB@@LB@Position - mRNA 261 -- 292@LB@Position - sRNA 51 -- 85@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 112 |
0.01186 |
0.3513 |
b2021 |
hisC |
-13.06 |
0.059267 |
35 -- 113 |
9 -- 85 |
histidinol-phosphate aminotransferase |
|
_____________34___________________________________________________________________________________114\n_____________|____________________________________________________________________________________|\n5'-GUU...CUGUU_____C__G___________AUUUCCA_______C___ACC_UAC__G__C_____AAAGAG_____________CU_______AACCA...GGC-3'\n______________CCAGC_UC_GGCUGGC__AG________GAAGCG_AUG___G___AG_AA_UGUCG_______GGGUUCUCCGCG__GG_CUUC\n______________|||||_:|_|||||||__||________|||||:_|||___|___||_||_|||||_______:|||||||||||__||_||||\n______________GGUCG_GG_CCGACCG__UC________CUUCGU_UAC___C___UC_UU_ACAGC_______UCCAAGAGGCGC__CC_GAAG\n______3'-UUUUC_____U__G_______AU__AUUAUGAC__________A________G________ACGAAAG____________UC__A____GACUAGCG-5'\n_____________|____________________________________________________________________________________|\n_____________86___________________________________________________________________________________8\n |
99 -- 105 |
18 -- 24 |
-69.7784 kcal/mol |
31.0124 kcal/mol |
25.703 kcal/mol |
34 114@LB@ | |@LB@5'-GUU...CUGUU C G AUUUCCA C ACC UAC G C AAAGAG CU AACCA...GGC-3'@LB@ CCAGC UC GGCUGGC AG GAAGCG AUG G AG AA UGUCG GGGUUCUCCGCG GG CUUC@LB@ ||||| :| ||||||| || |||||: ||| | || || ||||| :||||||||||| || ||||@LB@ GGUCG GG CCGACCG UC CUUCGU UAC C UC UU ACAGC UCCAAGAGGCGC CC GAAG@LB@ 3'-UUUUC U G AU AUUAUGAC A G ACGAAAG UC A GACUAGCG-5'@LB@ | |@LB@ 86 8@LB@@LB@@LB@Energy -13.06 kcal/mol@LB@Hybridization Energy -69.7784 kcal/mol@LB@Unfolding Energy - mRNA 31.0124 kcal/mol@LB@Unfolding Energy - sRNA 25.703 kcal/mol@LB@@LB@Position - mRNA 35 -- 113@LB@Position - sRNA 9 -- 85@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 155 |
0.01913 |
0.4072 |
b2022 |
hisB |
-9.38 |
0.234588 |
182 -- 245 |
3 -- 62 |
histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase |
|
_____________181__________________________________________________________________246\n_____________|____________________________________________________________________|\n5'-CAG...CGCCU___G__C_______GUU__A_____CAGAA___AU_____UA____GA______U__AAC________AGCGA...AAC-3'\n______________UAC_UG_GGAGCAA___UG_UGAGU______GU__CUUUU____UC__UCGCGA_GG____CCUGAUU\n______________|||_||_|:|||||___||_||||:______||__||||:____||__:|||||_||____||||||:\n______________AUG_AC_CUUCGUU___AC_ACUCG______CA__GAAAG____AG__GGCGCU_CC____GGACUAG\n3'-UUU...UCAUU_________________________UUACAG__C______UCCA__A_______C__AGAA_______CG-5'\n_____________|____________________________________________________________________|\n_____________63___________________________________________________________________2\n |
239 -- 245 |
3 -- 9 |
-38.4245 kcal/mol |
14.9226 kcal/mol |
14.1216 kcal/mol |
181 246@LB@ | |@LB@5'-CAG...CGCCU G C GUU A CAGAA AU UA GA U AAC AGCGA...AAC-3'@LB@ UAC UG GGAGCAA UG UGAGU GU CUUUU UC UCGCGA GG CCUGAUU@LB@ ||| || |:||||| || ||||: || ||||: || :||||| || ||||||:@LB@ AUG AC CUUCGUU AC ACUCG CA GAAAG AG GGCGCU CC GGACUAG@LB@3'-UUU...UCAUU UUACAG C UCCA A C AGAA CG-5'@LB@ | |@LB@ 63 2@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -38.4245 kcal/mol@LB@Unfolding Energy - mRNA 14.9226 kcal/mol@LB@Unfolding Energy - sRNA 14.1216 kcal/mol@LB@@LB@Position - mRNA 182 -- 245@LB@Position - sRNA 3 -- 62@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 172 |
0.02103 |
0.4072 |
b2043 |
wcaM |
-13.25 |
0.055075 |
7 -- 38 |
49 -- 84 |
colanic acid biosynthesis protein |
|
_____________6_____________________________________39\n_____________|_____________________________________|\n_____5'-GGCUGA__A__________________C_____A_________CUCGC...AAA-3'\n______________CA__AUCCGGCUGGCU_GGUG___CUG_GAA_CGAUG\n______________||__|:||||||||||_:||:___|||_|||_|:|||\n______________GU__UGGGCCGACCGA_UCAU___GAC_CUU_GUUAC\n_____3'-UUUUCG__CG____________U____UAU_______C_____ACUCG...GCG-5'\n_____________|_____________________________________|\n_____________85____________________________________48\n |
15 -- 21 |
69 -- 75 |
-36.8983 kcal/mol |
9.08712 kcal/mol |
14.5597 kcal/mol |
6 39@LB@ | |@LB@ 5'-GGCUGA A C A CUCGC...AAA-3'@LB@ CA AUCCGGCUGGCU GGUG CUG GAA CGAUG@LB@ || |:|||||||||| :||: ||| ||| |:|||@LB@ GU UGGGCCGACCGA UCAU GAC CUU GUUAC@LB@ 3'-UUUUCG CG U UAU C ACUCG...GCG-5'@LB@ | |@LB@ 85 48@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -36.8983 kcal/mol@LB@Unfolding Energy - mRNA 9.08712 kcal/mol@LB@Unfolding Energy - sRNA 14.5597 kcal/mol@LB@@LB@Position - mRNA 7 -- 38@LB@Position - sRNA 49 -- 84@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 72 |
0.00645 |
0.301 |
b2125 |
yehT |
-9.24 |
0.246554 |
1 -- 8 |
14 -- 21 |
putative response regulator in two-component system withYehU |
|
______________1_______9\n______________|_______|\n___________5'-________GCAAC...GUU-3'\n______________CGUGAGGG\n______________||:|||||\n______________GCGCUCCC\n3'-UUU...AAGAG________AGAAG...GCG-5'\n_____________|________|\n_____________22_______13\n |
2 -- 8 |
14 -- 20 |
-15.432 kcal/mol |
1.85513 kcal/mol |
4.33947 kcal/mol |
1 9@LB@ | |@LB@ 5'- GCAAC...GUU-3'@LB@ CGUGAGGG@LB@ ||:|||||@LB@ GCGCUCCC@LB@3'-UUU...AAGAG AGAAG...GCG-5'@LB@ | |@LB@ 22 13@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -15.432 kcal/mol@LB@Unfolding Energy - mRNA 1.85513 kcal/mol@LB@Unfolding Energy - sRNA 4.33947 kcal/mol@LB@@LB@Position - mRNA 1 -- 8@LB@Position - sRNA 14 -- 21@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 126 |
0.01361 |
0.3627 |
b2135 |
yohC |
-14.18 |
0.038247 |
192 -- 212 |
38 -- 58 |
Yip1 family inner membrane protein |
|
_____________191___________________213\n_____________|_____________________|\n5'-CAU...AACAA_________A_____C_____UGGGG...UUU-3'\n______________GGGGGCGGU_UGAGC_AUGUC\n______________||::||::|_|||||_|||||\n______________CCUUCGUUA_ACUCG_UACAG\n3'-UUU...UAUGA_________C_____U_____CACGA...GCG-5'\n_____________|_____________________|\n_____________59____________________37\n |
192 -- 198 |
52 -- 58 |
-26.6444 kcal/mol |
9.24504 kcal/mol |
3.21639 kcal/mol |
191 213@LB@ | |@LB@5'-CAU...AACAA A C UGGGG...UUU-3'@LB@ GGGGGCGGU UGAGC AUGUC@LB@ ||::||::| ||||| |||||@LB@ CCUUCGUUA ACUCG UACAG@LB@3'-UUU...UAUGA C U CACGA...GCG-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -14.18 kcal/mol@LB@Hybridization Energy -26.6444 kcal/mol@LB@Unfolding Energy - mRNA 9.24504 kcal/mol@LB@Unfolding Energy - sRNA 3.21639 kcal/mol@LB@@LB@Position - mRNA 192 -- 212@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 75 |
0.007199 |
0.3134 |
b2167 |
fruA |
-15.16 |
0.026023 |
90 -- 122 |
43 -- 84 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________89_________________________________________123\n_____________|__________________________________________|\n5'-CGC...UGUUG____________________CA____________________UUACC...AAA-3'\n______________CAGC_CCUGGC_GG_UAAGU________AAGCAAUGUGGGUA\n______________||||_||:|||_||_|||||________||||||||||:|:|\n______________GUCG_GGGCCG_CC_AUUCA________UUCGUUACACUCGU\n_____3'-UUUUCG____U______A__G_____UUAUGACC______________UACAG...GCG-5'\n_____________|__________________________________________|\n_____________85_________________________________________42\n |
116 -- 122 |
43 -- 49 |
-41.7817 kcal/mol |
11.7261 kcal/mol |
14.8963 kcal/mol |
89 123@LB@ | |@LB@5'-CGC...UGUUG CA UUACC...AAA-3'@LB@ CAGC CCUGGC GG UAAGU AAGCAAUGUGGGUA@LB@ |||| ||:||| || ||||| ||||||||||:|:|@LB@ GUCG GGGCCG CC AUUCA UUCGUUACACUCGU@LB@ 3'-UUUUCG U A G UUAUGACC UACAG...GCG-5'@LB@ | |@LB@ 85 42@LB@@LB@@LB@Energy -15.16 kcal/mol@LB@Hybridization Energy -41.7817 kcal/mol@LB@Unfolding Energy - mRNA 11.7261 kcal/mol@LB@Unfolding Energy - sRNA 14.8963 kcal/mol@LB@@LB@Position - mRNA 90 -- 122@LB@Position - sRNA 43 -- 84@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 43 -- 49@LB@ |
