14 |
0.0009144 |
0.2195 |
b0181 |
lpxA |
-19.56 |
0.004514 |
124 -- 202 |
1 -- 90 |
UDP-N-acetylglucosamine acetyltransferase |
|
_____________123_____________________________________________________________________________________________203\n_____________|_______________________________________________________________________________________________|\n5'-CGG...UUUUA_____G_U_________CGA____A___________C_______C_________________CG___________G_______________A___GAUUG...GAC-3'\n______________AAGGG_U_GC_UCUGGU___UGGU_AAGUAGU_UUG_GAAGCAA___GA_UGAUGU_GUGCU__UAG_____CCG_GAGG_____CCUGAU_CGU\n______________||::|_:_||_:|:||:___|||:_|||||:|_:||_|||||||___||_::||||_|||||__:||_____|||_||||_____||||||_||:\n______________UUUUC_G_CG_GGGCCG___ACCG_UUCAUUA_GAC_CUUCGUU___CU_GUUACA_CACGA__GUC_____GGC_CUCC_____GGACUA_GCG\n___________3'-_____G_U__U_____________A_______U___________ACA__C______G_____AA___CAAGA___G____CAGAA__________-5'\n______________|_____________________________________________________________________________________________|\n______________90____________________________________________________________________________________________1\n |
159 -- 165 |
51 -- 57 |
-68.8911 kcal/mol |
23.6052 kcal/mol |
25.7298 kcal/mol |
123 203@LB@ | |@LB@5'-CGG...UUUUA G U CGA A C C CG G A GAUUG...GAC-3'@LB@ AAGGG U GC UCUGGU UGGU AAGUAGU UUG GAAGCAA GA UGAUGU GUGCU UAG CCG GAGG CCUGAU CGU@LB@ ||::| : || :|:||: |||: |||||:| :|| ||||||| || ::|||| ||||| :|| ||| |||| |||||| ||:@LB@ UUUUC G CG GGGCCG ACCG UUCAUUA GAC CUUCGUU CU GUUACA CACGA GUC GGC CUCC GGACUA GCG@LB@ 3'- G U U A U ACA C G AA CAAGA G CAGAA -5'@LB@ | |@LB@ 90 1@LB@@LB@@LB@Energy -19.56 kcal/mol@LB@Hybridization Energy -68.8911 kcal/mol@LB@Unfolding Energy - mRNA 23.6052 kcal/mol@LB@Unfolding Energy - sRNA 25.7298 kcal/mol@LB@@LB@Position - mRNA 124 -- 202@LB@Position - sRNA 1 -- 90@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
83 |
0.008249 |
0.3318 |
b0183 |
rnhB |
-13.04 |
0.059790 |
42 -- 55 |
44 -- 58 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
_____________41______________56\n_____________|_______________|\n5'-AAU...UUGCA_______________CGCAA...UCC-3'\n______________GGAAG_AGUGUGAGC\n______________|||||_|:|||||||\n______________CCUUC_UUACACUCG\n3'-UUU...UAUGA_____G_________UUACA...GCG-5'\n_____________|_______________|\n_____________59______________43\n |
49 -- 55 |
44 -- 50 |
-21.6429 kcal/mol |
5.39444 kcal/mol |
3.20799 kcal/mol |
41 56@LB@ | |@LB@5'-AAU...UUGCA CGCAA...UCC-3'@LB@ GGAAG AGUGUGAGC@LB@ ||||| |:|||||||@LB@ CCUUC UUACACUCG@LB@3'-UUU...UAUGA G UUACA...GCG-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -13.04 kcal/mol@LB@Hybridization Energy -21.6429 kcal/mol@LB@Unfolding Energy - mRNA 5.39444 kcal/mol@LB@Unfolding Energy - sRNA 3.20799 kcal/mol@LB@@LB@Position - mRNA 42 -- 55@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 44 -- 50@LB@ |
97 |
0.0101 |
0.3393 |
b0192 |
nlpE |
-13.07 |
0.059097 |
192 -- 230 |
40 -- 68 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________191_____________________________________231\n_____________|_______________________________________|\n5'-UCA...AAAAG___GA___GA___UGAAAA_______A____CA______GCUGU...CGC-3'\n______________AAG__AUG__UGG______AAGCGAU_GUGA__GCGAUG\n______________|||__||:__|||______||||:||_||||__||:|||\n______________UUC__UAU__ACC______UUCGUUA_CACU__CGUUAC\n3'-UUU...ACCGA___AU___G______________________________AGCAC...GCG-5'\n_____________|_______________________________________|\n_____________69______________________________________39\n |
211 -- 217 |
50 -- 56 |
-20.8621 kcal/mol |
4.48665 kcal/mol |
3.30507 kcal/mol |
191 231@LB@ | |@LB@5'-UCA...AAAAG GA GA UGAAAA A CA GCUGU...CGC-3'@LB@ AAG AUG UGG AAGCGAU GUGA GCGAUG@LB@ ||| ||: ||| ||||:|| |||| ||:|||@LB@ UUC UAU ACC UUCGUUA CACU CGUUAC@LB@3'-UUU...ACCGA AU G AGCAC...GCG-5'@LB@ | |@LB@ 69 39@LB@@LB@@LB@Energy -13.07 kcal/mol@LB@Hybridization Energy -20.8621 kcal/mol@LB@Unfolding Energy - mRNA 4.48665 kcal/mol@LB@Unfolding Energy - sRNA 3.30507 kcal/mol@LB@@LB@Position - mRNA 192 -- 230@LB@Position - sRNA 40 -- 68@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 50 -- 56@LB@ |
16 |
0.00116 |
0.2406 |
b0221 |
fadE |
-14.73 |
0.030789 |
87 -- 104 |
36 -- 53 |
acyl coenzyme A dehydrogenase |
|
_____________86_________________105\n_____________|__________________|\n5'-GUG...AGCAA__________UU______AAUUA...GGA-3'\n______________CAAUGUGAGC__UGUUGU\n______________||||||||||__|||:||\n______________GUUACACUCG__ACAGCA\n3'-UUU...CCUUC__________UU______CGAAA...GCG-5'\n_____________|__________________|\n_____________54_________________35\n |
90 -- 96 |
44 -- 50 |
-23.2381 kcal/mol |
5.2956 kcal/mol |
3.20883 kcal/mol |
86 105@LB@ | |@LB@5'-GUG...AGCAA UU AAUUA...GGA-3'@LB@ CAAUGUGAGC UGUUGU@LB@ |||||||||| |||:||@LB@ GUUACACUCG ACAGCA@LB@3'-UUU...CCUUC UU CGAAA...GCG-5'@LB@ | |@LB@ 54 35@LB@@LB@@LB@Energy -14.73 kcal/mol@LB@Hybridization Energy -23.2381 kcal/mol@LB@Unfolding Energy - mRNA 5.2956 kcal/mol@LB@Unfolding Energy - sRNA 3.20883 kcal/mol@LB@@LB@Position - mRNA 87 -- 104@LB@Position - sRNA 36 -- 53@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 44 -- 50@LB@ |
136 |
0.01542 |
0.379 |
b0428 |
cyoE |
-15.83 |
0.019915 |
1 -- 35 |
23 -- 58 |
protoheme IX farnesyltransferase |
|
______________1____________________________________36\n______________|____________________________________|\n___________5'-_________CCU_______GCA___G_A_________GGUGC...GCA-3'\n______________GGAA_CAAU___GGCAAUG___GUG_U__CAGGUUCU\n______________||||_||||___:||||||___|||_|__||||||||\n______________CCUU_GUUA___UCGUUAC___CAC_A__GUCCAAGA\n3'-UUU...UAUGA____C____CAC_______AG____G_AA________GGCGC...GCG-5'\n_____________|_____________________________________|\n_____________59____________________________________22\n |
29 -- 35 |
23 -- 29 |
-31.8533 kcal/mol |
8.10531 kcal/mol |
7.91355 kcal/mol |
1 36@LB@ | |@LB@ 5'- CCU GCA G A GGUGC...GCA-3'@LB@ GGAA CAAU GGCAAUG GUG U CAGGUUCU@LB@ |||| |||| :|||||| ||| | ||||||||@LB@ CCUU GUUA UCGUUAC CAC A GUCCAAGA@LB@3'-UUU...UAUGA C CAC AG G AA GGCGC...GCG-5'@LB@ | |@LB@ 59 22@LB@@LB@@LB@Energy -15.83 kcal/mol@LB@Hybridization Energy -31.8533 kcal/mol@LB@Unfolding Energy - mRNA 8.10531 kcal/mol@LB@Unfolding Energy - sRNA 7.91355 kcal/mol@LB@@LB@Position - mRNA 1 -- 35@LB@Position - sRNA 23 -- 58@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 23 -- 29@LB@ |
166 |
0.02064 |
0.4072 |
b0429 |
cyoD |
-11.77 |
0.097498 |
188 -- 206 |
44 -- 59 |
cytochrome o ubiquinol oxidase subunit IV |
|
_____________187_________________207\n_____________|___________________|\n5'-UUC...UCUGA____________AAU____CAUUC...UCU-3'\n______________UGGGGGCGAUGU___GAGU\n______________|||::||:||||___|||:\n______________ACCUUCGUUACA___CUCG\n3'-UUU...UUAUG___________________UUACA...GCG-5'\n_____________|___________________|\n_____________60__________________43\n |
193 -- 199 |
48 -- 54 |
-20.4312 kcal/mol |
5.39053 kcal/mol |
3.27056 kcal/mol |
187 207@LB@ | |@LB@5'-UUC...UCUGA AAU CAUUC...UCU-3'@LB@ UGGGGGCGAUGU GAGU@LB@ |||::||:|||| |||:@LB@ ACCUUCGUUACA CUCG@LB@3'-UUU...UUAUG UUACA...GCG-5'@LB@ | |@LB@ 60 43@LB@@LB@@LB@Energy -11.77 kcal/mol@LB@Hybridization Energy -20.4312 kcal/mol@LB@Unfolding Energy - mRNA 5.39053 kcal/mol@LB@Unfolding Energy - sRNA 3.27056 kcal/mol@LB@@LB@Position - mRNA 188 -- 206@LB@Position - sRNA 44 -- 59@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 48 -- 54@LB@ |
120 |
0.0128 |
0.3585 |
b0445 |
ybaE |
-11.02 |
0.129416 |
154 -- 176 |
41 -- 63 |
putative ABC transporter periplasmic binding protein |
|
_____________153______________________177\n_____________|________________________|\n5'-CGU...GAUAU______________A____A____UAAAU...GUU-3'\n______________AUAC_GGAAGUAAU_GUGA_UAGU\n______________||||_|||||:|||_||||_:|:|\n______________UAUG_CCUUCGUUA_CACU_GUUA\n3'-UUU...UUCAU____A______________C____CAGCA...GCG-5'\n_____________|________________________|\n_____________64_______________________40\n |
159 -- 165 |
51 -- 57 |
-19.1991 kcal/mol |
4.87781 kcal/mol |
3.30177 kcal/mol |
153 177@LB@ | |@LB@5'-CGU...GAUAU A A UAAAU...GUU-3'@LB@ AUAC GGAAGUAAU GUGA UAGU@LB@ |||| |||||:||| |||| :|:|@LB@ UAUG CCUUCGUUA CACU GUUA@LB@3'-UUU...UUCAU A C CAGCA...GCG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -19.1991 kcal/mol@LB@Unfolding Energy - mRNA 4.87781 kcal/mol@LB@Unfolding Energy - sRNA 3.30177 kcal/mol@LB@@LB@Position - mRNA 154 -- 176@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
116 |
0.01242 |
0.3585 |
b0468 |
ybaN |
-14.97 |
0.028033 |
230 -- 260 |
44 -- 78 |
DUF454 family inner membrane protein |
|
_____________229___________________________________261\n_____________|_____________________________________|\n5'-GUC...AUUGG_______________________UAC___________GUGGU...UGC-3'\n______________CUGGCUGGC__GGUAGUGCUGGG___GC____UGGGC\n______________|:|||||||__:|||:|:||||:___||____||:||\n______________GGCCGACCG__UCAUUAUGACCU___CG____ACUCG\n3'-UUU...UCGUG_________AU____________U____UUAC_____UUACA...GCG-5'\n_____________|_____________________________________|\n_____________79____________________________________43\n |
244 -- 250 |
56 -- 62 |
-40.2392 kcal/mol |
12.5705 kcal/mol |
12.6976 kcal/mol |
229 261@LB@ | |@LB@5'-GUC...AUUGG UAC GUGGU...UGC-3'@LB@ CUGGCUGGC GGUAGUGCUGGG GC UGGGC@LB@ |:||||||| :|||:|:||||: || ||:||@LB@ GGCCGACCG UCAUUAUGACCU CG ACUCG@LB@3'-UUU...UCGUG AU U UUAC UUACA...GCG-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -40.2392 kcal/mol@LB@Unfolding Energy - mRNA 12.5705 kcal/mol@LB@Unfolding Energy - sRNA 12.6976 kcal/mol@LB@@LB@Position - mRNA 230 -- 260@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 56 -- 62@LB@ |
156 |
0.0192 |
0.4072 |
b0472 |
recR |
-11.39 |
0.112512 |
68 -- 82 |
54 -- 68 |
gap repair protein |
|
_____________67______________83\n_____________|_______________|\n5'-GUG...CGACA___A___________ACCUG...UUC-3'\n______________AAG_GAUGCUGGAAG\n______________|||_:||:|||||||\n______________UUC_UUAUGACCUUC\n3'-UUU...ACCGA___A___________GUUAC...GCG-5'\n_____________|_______________|\n_____________69______________53\n |
76 -- 82 |
54 -- 60 |
-16.6291 kcal/mol |
2.52602 kcal/mol |
2.71091 kcal/mol |
67 83@LB@ | |@LB@5'-GUG...CGACA A ACCUG...UUC-3'@LB@ AAG GAUGCUGGAAG@LB@ ||| :||:|||||||@LB@ UUC UUAUGACCUUC@LB@3'-UUU...ACCGA A GUUAC...GCG-5'@LB@ | |@LB@ 69 53@LB@@LB@@LB@Energy -11.39 kcal/mol@LB@Hybridization Energy -16.6291 kcal/mol@LB@Unfolding Energy - mRNA 2.52602 kcal/mol@LB@Unfolding Energy - sRNA 2.71091 kcal/mol@LB@@LB@Position - mRNA 68 -- 82@LB@Position - sRNA 54 -- 68@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 54 -- 60@LB@ |
54 |
0.00511 |
0.2905 |
b0487 |
cueR |
-8.71 |
0.294876 |
81 -- 102 |
6 -- 25 |
copper-responsive regulon transcriptional regulator |
|
_____________80_____________________103\n_____________|______________________|\n5'-GUU...ACAUC________C_CA__A_______UAUUA...AAA-3'\n______________UCUCUGUG_G__GU_CUUCCUG\n______________||||:|:|_|__||_|||||||\n______________AGAGGCGC_C__CA_GAAGGAC\n3'-UUU...GUCCA________U_C___________UAGCG-5'\n_____________|______________________|\n_____________26_____________________5\n |
96 -- 102 |
6 -- 12 |
-22.4921 kcal/mol |
6.07455 kcal/mol |
7.70509 kcal/mol |
80 103@LB@ | |@LB@5'-GUU...ACAUC C CA A UAUUA...AAA-3'@LB@ UCUCUGUG G GU CUUCCUG@LB@ ||||:|:| | || |||||||@LB@ AGAGGCGC C CA GAAGGAC@LB@3'-UUU...GUCCA U C UAGCG-5'@LB@ | |@LB@ 26 5@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -22.4921 kcal/mol@LB@Unfolding Energy - mRNA 6.07455 kcal/mol@LB@Unfolding Energy - sRNA 7.70509 kcal/mol@LB@@LB@Position - mRNA 81 -- 102@LB@Position - sRNA 6 -- 25@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 6 -- 12@LB@ |