| 135 |
0.0153 |
0.379 |
b1245 |
oppC |
-10.91 |
0.134968 |
184 -- 214 |
42 -- 65 |
oligopeptide ABC transporter permease |
|
_____________183_____________________________215\n_____________|_______________________________|\n5'-GGU...GUUAC___________CUC______A__UUA_____GAAAA...UUA-3'\n______________UGAUACUGGAG___GCGAUG_UG___AGUAA\n______________|:||||||||:___||:|||_||___||:||\n______________AUUAUGACCUU___CGUUAC_AC___UCGUU\n3'-UUU...GAUUC_______________________________ACAGC...GCG-5'\n_____________|_______________________________|\n_____________66______________________________41\n |
188 -- 194 |
55 -- 61 |
-22.5581 kcal/mol |
8.34668 kcal/mol |
3.30456 kcal/mol |
183 215@LB@ | |@LB@5'-GGU...GUUAC CUC A UUA GAAAA...UUA-3'@LB@ UGAUACUGGAG GCGAUG UG AGUAA@LB@ |:||||||||: ||:||| || ||:||@LB@ AUUAUGACCUU CGUUAC AC UCGUU@LB@3'-UUU...GAUUC ACAGC...GCG-5'@LB@ | |@LB@ 66 41@LB@@LB@@LB@Energy -10.91 kcal/mol@LB@Hybridization Energy -22.5581 kcal/mol@LB@Unfolding Energy - mRNA 8.34668 kcal/mol@LB@Unfolding Energy - sRNA 3.30456 kcal/mol@LB@@LB@Position - mRNA 184 -- 214@LB@Position - sRNA 42 -- 65@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 85 |
0.008408 |
0.3323 |
b1246 |
oppD |
-9.75 |
0.205761 |
38 -- 64 |
37 -- 61 |
oligopeptide ABC transporter ATPase |
|
_____________37__________________________65\n_____________|___________________________|\n5'-AGC...AAGCA_______U___U__C_________G__CGAAC...ACG-3'\n______________GCUGGGG_GCA_UG_UGAGUGAUG_CG\n______________:||||::_|||_||_||||::|||_||\n______________UGACCUU_CGU_AC_ACUCGUUAC_GC\n3'-UUU...CAUUA___________U____________A__ACGAA...GCG-5'\n_____________|___________________________|\n_____________62__________________________36\n |
55 -- 61 |
40 -- 46 |
-27.1525 kcal/mol |
14.0993 kcal/mol |
3.30158 kcal/mol |
37 65@LB@ | |@LB@5'-AGC...AAGCA U U C G CGAAC...ACG-3'@LB@ GCUGGGG GCA UG UGAGUGAUG CG@LB@ :||||:: ||| || ||||::||| ||@LB@ UGACCUU CGU AC ACUCGUUAC GC@LB@3'-UUU...CAUUA U A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -27.1525 kcal/mol@LB@Unfolding Energy - mRNA 14.0993 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 38 -- 64@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 55 -- 61@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 194 |
0.02479 |
0.4226 |
b1260 |
trpA |
-8.29 |
0.338830 |
290 -- 297 |
41 -- 48 |
tryptophan synthase alpha subunit |
|
_____________289______298\n_____________|________|\n5'-GCC...GGCAU________CAU-3'\n______________UGAGCAGU\n______________||||||:|\n______________ACUCGUUA\n3'-UUU...GUUAC________CAGCA...GCG-5'\n_____________|________|\n_____________49_______40\n |
291 -- 297 |
41 -- 47 |
-10.1831 kcal/mol |
0.772851 kcal/mol |
1.11967 kcal/mol |
289 298@LB@ | |@LB@5'-GCC...GGCAU CAU-3'@LB@ UGAGCAGU@LB@ ||||||:|@LB@ ACUCGUUA@LB@3'-UUU...GUUAC CAGCA...GCG-5'@LB@ | |@LB@ 49 40@LB@@LB@@LB@Energy -8.29 kcal/mol@LB@Hybridization Energy -10.1831 kcal/mol@LB@Unfolding Energy - mRNA 0.772851 kcal/mol@LB@Unfolding Energy - sRNA 1.11967 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 41 -- 48@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 89 |
0.009246 |
0.3393 |
b1279 |
yciS |
-12.08 |
0.086714 |
189 -- 204 |
46 -- 61 |
DUF1049 family inner membrane protein function unknown |
|
_____________188______________205\n_____________|________________|\n5'-ACC...ACAUA__G_____________AAUAU...UGU-3'\n______________AC_GGAAGUAAUGUGA\n______________||_|||||:|||||||\n______________UG_CCUUCGUUACACU\n3'-UUU...CAUUA__A_____________CGUUA...GCG-5'\n_____________|________________|\n_____________62_______________45\n |
198 -- 204 |
46 -- 52 |
-21.4875 kcal/mol |
6.16612 kcal/mol |
3.24422 kcal/mol |
188 205@LB@ | |@LB@5'-ACC...ACAUA G AAUAU...UGU-3'@LB@ AC GGAAGUAAUGUGA@LB@ || |||||:|||||||@LB@ UG CCUUCGUUACACU@LB@3'-UUU...CAUUA A CGUUA...GCG-5'@LB@ | |@LB@ 62 45@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -21.4875 kcal/mol@LB@Unfolding Energy - mRNA 6.16612 kcal/mol@LB@Unfolding Energy - sRNA 3.24422 kcal/mol@LB@@LB@Position - mRNA 189 -- 204@LB@Position - sRNA 46 -- 61@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 163 |
0.02026 |
0.4072 |
b1283 |
osmB |
-10.88 |
0.136535 |
231 -- 259 |
38 -- 61 |
osmotically and stress inducible lipoprotein |
|
_____________230___________________________260\n_____________|_____________________________|\n5'-UAA...CCGCG____UUCU______UACUUU_________UCUGA...ACA-3'\n______________GCUG____GGCAAU______GGCAAUGUC\n______________:|||____:|||||______:||||||||\n______________UGAC____UCGUUA______UCGUUACAG\n3'-UUU...CAUUA____CU________CAC____________CACGA...GCG-5'\n_____________|_____________________________|\n_____________62____________________________37\n |
253 -- 259 |
38 -- 44 |
-21.4164 kcal/mol |
7.23917 kcal/mol |
3.30134 kcal/mol |
230 260@LB@ | |@LB@5'-UAA...CCGCG UUCU UACUUU UCUGA...ACA-3'@LB@ GCUG GGCAAU GGCAAUGUC@LB@ :||| :||||| :||||||||@LB@ UGAC UCGUUA UCGUUACAG@LB@3'-UUU...CAUUA CU CAC CACGA...GCG-5'@LB@ | |@LB@ 62 37@LB@@LB@@LB@Energy -10.88 kcal/mol@LB@Hybridization Energy -21.4164 kcal/mol@LB@Unfolding Energy - mRNA 7.23917 kcal/mol@LB@Unfolding Energy - sRNA 3.30134 kcal/mol@LB@@LB@Position - mRNA 231 -- 259@LB@Position - sRNA 38 -- 61@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 36 |
0.00312 |
0.2776 |
b1418 |
cybB |
-18.82 |
0.006053 |
229 -- 299 |
21 -- 85 |
cytochrome b561 |
|
_____________228__________________________________________________________________________300\n_____________|____________________________________________________________________________|\n5'-AAC...ACAAA_______UCA_________CUUUU________UUAUC____C__AUU_C______GA_________U__U______C-3'\n______________UCAGCAU___CUGGCUGGU_______UACUGG_____GCAG_GU___G_GCAAUG__GU___UUCG_GG_UUCUUC\n______________:|||||:___|:||||||:_______||||||_____|||:_||___|_||||||__||___|||:_||_||||:|\n______________GGUCGUG___GGCCGACCG_______AUGACC_____CGUU_CA___C_CGUUAC__CA___AAGU_CC_AAGAGG\n______3'-UUUUC___________________AUUCAUU______UU_______A______U______AG__CGA______________CGCUC...GCG-5'\n_____________|____________________________________________________________________________|\n_____________86___________________________________________________________________________20\n |
241 -- 247 |
70 -- 76 |
-54.3818 kcal/mol |
15.9593 kcal/mol |
19.6 kcal/mol |
228 300@LB@ | |@LB@5'-AAC...ACAAA UCA CUUUU UUAUC C AUU C GA U U C-3'@LB@ UCAGCAU CUGGCUGGU UACUGG GCAG GU G GCAAUG GU UUCG GG UUCUUC@LB@ :|||||: |:||||||: |||||| |||: || | |||||| || |||: || ||||:|@LB@ GGUCGUG GGCCGACCG AUGACC CGUU CA C CGUUAC CA AAGU CC AAGAGG@LB@ 3'-UUUUC AUUCAUU UU A U AG CGA CGCUC...GCG-5'@LB@ | |@LB@ 86 20@LB@@LB@@LB@Energy -18.82 kcal/mol@LB@Hybridization Energy -54.3818 kcal/mol@LB@Unfolding Energy - mRNA 15.9593 kcal/mol@LB@Unfolding Energy - sRNA 19.6 kcal/mol@LB@@LB@Position - mRNA 229 -- 299@LB@Position - sRNA 21 -- 85@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 10 |
0.0006218 |
0.2043 |
b1423 |
ydcJ |
-15.65 |
0.021404 |
209 -- 256 |
38 -- 84 |
putative metalloenzyme |
|
_____________208__________________________________________________257\n_____________|____________________________________________________|\n5'-GAA...GCGAA_______A_______A____AUUCG___________UUUC_CA_________AGCCA...UGG-3'\n______________CAGCAUC_CGGC_GG_UGAG_______GGAA_CAGU____G__GGCAAUGUC\n______________|||||:|_||||_||_|:||_______||||_||:|____|__:||||||||\n______________GUCGUGG_GCCG_CC_AUUC_______CCUU_GUUA____C__UCGUUACAG\n_____3'-UUUUCG____________A__G____AUUAUGA____C_________AC_________CACGA...GCG-5'\n_____________|____________________________________________________|\n_____________85___________________________________________________37\n |
250 -- 256 |
38 -- 44 |
-41.5422 kcal/mol |
10.9926 kcal/mol |
14.897 kcal/mol |
208 257@LB@ | |@LB@5'-GAA...GCGAA A A AUUCG UUUC CA AGCCA...UGG-3'@LB@ CAGCAUC CGGC GG UGAG GGAA CAGU G GGCAAUGUC@LB@ |||||:| |||| || |:|| |||| ||:| | :||||||||@LB@ GUCGUGG GCCG CC AUUC CCUU GUUA C UCGUUACAG@LB@ 3'-UUUUCG A G AUUAUGA C AC CACGA...GCG-5'@LB@ | |@LB@ 85 37@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -41.5422 kcal/mol@LB@Unfolding Energy - mRNA 10.9926 kcal/mol@LB@Unfolding Energy - sRNA 14.897 kcal/mol@LB@@LB@Position - mRNA 209 -- 256@LB@Position - sRNA 38 -- 84@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 104 |
0.01058 |
0.3418 |
b1475 |
fdnH |
-14.92 |
0.028592 |
64 -- 96 |
25 -- 61 |
formate dehydrogenase-N Fe-S (beta) subunit nitrate-inducible |
|
_____________63____________________________________97\n_____________|_____________________________________|\n5'-CGC...AAUCC_________UU______________C__GUAA_____AUAUC...UUA-3'\n______________ACUGG_GGC____UGAG_GGUGUCG_GC____AGGUU\n______________|||||_:||____||||_::|||||_||____|||||\n______________UGACC_UCG____ACUC_UUACAGC_CG____UCCAA\n3'-UUU...CAUUA_____U___UUAC____G_______A__AAAG_____GAGGC...GCG-5'\n_____________|_____________________________________|\n_____________62____________________________________24\n |
78 -- 84 |
37 -- 43 |
-32.5853 kcal/mol |
9.68233 kcal/mol |
7.98175 kcal/mol |
63 97@LB@ | |@LB@5'-CGC...AAUCC UU C GUAA AUAUC...UUA-3'@LB@ ACUGG GGC UGAG GGUGUCG GC AGGUU@LB@ ||||| :|| |||| ::||||| || |||||@LB@ UGACC UCG ACUC UUACAGC CG UCCAA@LB@3'-UUU...CAUUA U UUAC G A AAAG GAGGC...GCG-5'@LB@ | |@LB@ 62 24@LB@@LB@@LB@Energy -14.92 kcal/mol@LB@Hybridization Energy -32.5853 kcal/mol@LB@Unfolding Energy - mRNA 9.68233 kcal/mol@LB@Unfolding Energy - sRNA 7.98175 kcal/mol@LB@@LB@Position - mRNA 64 -- 96@LB@Position - sRNA 25 -- 61@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 195 |
0.0249 |
0.4226 |
b1476 |
fdnI |
-9.91 |
0.194140 |
190 -- 212 |
37 -- 58 |
formate dehydrogenase-N cytochrome B556 (gamma) subunit nitrate-inducible |
|
_____________189______________________213\n_____________|________________________|\n5'-CGU...GACGA_____AU__UCA____________AAAAU...UUU-3'\n______________GGAGG__CA___UGAGUAA_GUCG\n______________|||:|__||___||||:||_||||\n______________CCUUC__GU___ACUCGUU_CAGC\n3'-UUU...UAUGA_________UAC_______A____ACGAA...GCG-5'\n_____________|________________________|\n_____________59_______________________36\n |
202 -- 208 |
42 -- 48 |
-19.5397 kcal/mol |
6.39857 kcal/mol |
3.22699 kcal/mol |
189 213@LB@ | |@LB@5'-CGU...GACGA AU UCA AAAAU...UUU-3'@LB@ GGAGG CA UGAGUAA GUCG@LB@ |||:| || ||||:|| ||||@LB@ CCUUC GU ACUCGUU CAGC@LB@3'-UUU...UAUGA UAC A ACGAA...GCG-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -19.5397 kcal/mol@LB@Unfolding Energy - mRNA 6.39857 kcal/mol@LB@Unfolding Energy - sRNA 3.22699 kcal/mol@LB@@LB@Position - mRNA 190 -- 212@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 13 |
0.000833 |
0.2153 |
b1531 |
marA |
-8.74 |
0.292618 |
190 -- 205 |
38 -- 57 |
multiple antibiotic resistance transcriptional regulator |
|
_____________189__________________206\n_____________|____________________|\n5'-AAG...AAAAA____________________CAGAC...AGC-3'\n______________GAGGUA___UGA_CGAUGUC\n______________||:|:|___|||_|:|||||\n______________CUUCGU___ACU_GUUACAG\n3'-UUU...AUGAC______UAC___C_______CACGA...GCG-5'\n_____________|____________________|\n_____________58___________________37\n |
199 -- 205 |
38 -- 44 |
-15.3925 kcal/mol |
3.44101 kcal/mol |
3.2161 kcal/mol |
189 206@LB@ | |@LB@5'-AAG...AAAAA CAGAC...AGC-3'@LB@ GAGGUA UGA CGAUGUC@LB@ ||:|:| ||| |:|||||@LB@ CUUCGU ACU GUUACAG@LB@3'-UUU...AUGAC UAC C CACGA...GCG-5'@LB@ | |@LB@ 58 37@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -15.3925 kcal/mol@LB@Unfolding Energy - mRNA 3.44101 kcal/mol@LB@Unfolding Energy - sRNA 3.2161 kcal/mol@LB@@LB@Position - mRNA 190 -- 205@LB@Position - sRNA 38 -- 57@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |
