43 |
0.003552 |
0.2776 |
b3453 |
ugpB |
-15.55 |
0.022327 |
231 -- 272 |
40 -- 85 |
sn-glycerol-3-phosphate ABC transporter periplasmic binding protein |
|
_____________230______________________________________________273\n_____________|________________________________________________|\n5'-UUC...CAGCA___________A_____GU_______G_____U___CA__________ACGAC...UGG-3'\n______________CUGGCGCUCGG_CUGGC____UAAUG__GGAA_GCA_____GGCAGUG\n______________|::||:|:|||_|||||____||||:__||||_|||_____:|||:||\n______________GGUCGUGGGCC_GACCG____AUUAU__CCUU_CGU_____UCGUUAC\n______3'-UUUUC_________________AUUC_____GA________UACAC_______AGCAC...GCG-5'\n_____________|________________________________________________|\n_____________86_______________________________________________39\n |
266 -- 272 |
40 -- 46 |
-44.9281 kcal/mol |
14.4718 kcal/mol |
14.9103 kcal/mol |
230 273@LB@ | |@LB@5'-UUC...CAGCA A GU G U CA ACGAC...UGG-3'@LB@ CUGGCGCUCGG CUGGC UAAUG GGAA GCA GGCAGUG@LB@ |::||:|:||| ||||| ||||: |||| ||| :|||:||@LB@ GGUCGUGGGCC GACCG AUUAU CCUU CGU UCGUUAC@LB@ 3'-UUUUC AUUC GA UACAC AGCAC...GCG-5'@LB@ | |@LB@ 86 39@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -44.9281 kcal/mol@LB@Unfolding Energy - mRNA 14.4718 kcal/mol@LB@Unfolding Energy - sRNA 14.9103 kcal/mol@LB@@LB@Position - mRNA 231 -- 272@LB@Position - sRNA 40 -- 85@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 40 -- 46@LB@ |
153 |
0.01881 |
0.4072 |
b3524 |
yhjG |
-16.11 |
0.017836 |
180 -- 208 |
42 -- 68 |
putative inner membrane-anchored periplasmic AsmA family protein |
|
_____________179____________________________209\n_____________|______________________________|\n5'-UUG...ACAGG_________GA________ACGA_______GGCAG...GAC-3'\n______________AAG_AAUAU__GGAAGCGA____UGAGCAA\n______________|||_||||:__||||||:|____|||||||\n______________UUC_UUAUG__CCUUCGUU____ACUCGUU\n3'-UUU...ACCGA___A_____A_________AC_________ACAGC...GCG-5'\n_____________|______________________________|\n_____________69_____________________________41\n |
202 -- 208 |
42 -- 48 |
-23.3114 kcal/mol |
3.89448 kcal/mol |
3.30492 kcal/mol |
179 209@LB@ | |@LB@5'-UUG...ACAGG GA ACGA GGCAG...GAC-3'@LB@ AAG AAUAU GGAAGCGA UGAGCAA@LB@ ||| ||||: ||||||:| |||||||@LB@ UUC UUAUG CCUUCGUU ACUCGUU@LB@3'-UUU...ACCGA A A AC ACAGC...GCG-5'@LB@ | |@LB@ 69 41@LB@@LB@@LB@Energy -16.11 kcal/mol@LB@Hybridization Energy -23.3114 kcal/mol@LB@Unfolding Energy - mRNA 3.89448 kcal/mol@LB@Unfolding Energy - sRNA 3.30492 kcal/mol@LB@@LB@Position - mRNA 180 -- 208@LB@Position - sRNA 42 -- 68@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 42 -- 48@LB@ |
74 |
0.006788 |
0.3082 |
b3525 |
yhjH |
-16.42 |
0.015793 |
272 -- 288 |
44 -- 60 |
cyclic-di-GMP phosphodiesterase FlhDC-regulated |
|
_____________271_______________289\n_____________|_________________|\n5'-UUA...CGUUU____UU___________GUGCU...CCU-3'\n______________UUGG__GCAGUGUGAGC\n______________:|||__|||:|||||||\n______________GACC__CGUUACACUCG\n3'-UUU...AUUAU____UU___________UUACA...GCG-5'\n_____________|_________________|\n_____________61________________43\n |
279 -- 285 |
47 -- 53 |
-25.6078 kcal/mol |
5.89114 kcal/mol |
3.2985 kcal/mol |
271 289@LB@ | |@LB@5'-UUA...CGUUU UU GUGCU...CCU-3'@LB@ UUGG GCAGUGUGAGC@LB@ :||| |||:|||||||@LB@ GACC CGUUACACUCG@LB@3'-UUU...AUUAU UU UUACA...GCG-5'@LB@ | |@LB@ 61 43@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -25.6078 kcal/mol@LB@Unfolding Energy - mRNA 5.89114 kcal/mol@LB@Unfolding Energy - sRNA 3.2985 kcal/mol@LB@@LB@Position - mRNA 272 -- 288@LB@Position - sRNA 44 -- 60@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 47 -- 53@LB@ |
130 |
0.01403 |
0.3627 |
b3531 |
bcsZ |
-10.44 |
0.160598 |
268 -- 291 |
50 -- 82 |
endo-1 4-D-glucanase |
|
_____________267_______________________________292\n_____________|_________________________________|\n5'-UCA...AGCCU_________CU______________________UUAAA...AGG-3'\n______________GUACCUGGC__GC_________CUGGGAGCAGU\n______________|:|||:|||__||_________||||:||||:|\n______________CGUGGGCCG__CG_________GACCUUCGUUA\n___3'-UUUUCGGU_________AC__AUUCAUUAU___________CACUC...GCG-5'\n_____________|_________________________________|\n_____________83________________________________49\n |
283 -- 289 |
52 -- 58 |
-33.5305 kcal/mol |
8.70748 kcal/mol |
14.3864 kcal/mol |
267 292@LB@ | |@LB@5'-UCA...AGCCU CU UUAAA...AGG-3'@LB@ GUACCUGGC GC CUGGGAGCAGU@LB@ |:|||:||| || ||||:||||:|@LB@ CGUGGGCCG CG GACCUUCGUUA@LB@ 3'-UUUUCGGU AC AUUCAUUAU CACUC...GCG-5'@LB@ | |@LB@ 83 49@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -33.5305 kcal/mol@LB@Unfolding Energy - mRNA 8.70748 kcal/mol@LB@Unfolding Energy - sRNA 14.3864 kcal/mol@LB@@LB@Position - mRNA 268 -- 291@LB@Position - sRNA 50 -- 82@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 52 -- 58@LB@ |
106 |
0.01088 |
0.3447 |
b3543 |
dppB |
-11.69 |
0.100651 |
144 -- 153 |
41 -- 50 |
dipeptide/heme ABC transporter permease |
|
_____________143________154\n_____________|__________|\n5'-CGG...UGAUU__________ACAGA...AUC-3'\n______________UGUGAGCAAU\n______________||||||||||\n______________ACACUCGUUA\n3'-UUU...UCGUU__________CAGCA...GCG-5'\n_____________|__________|\n_____________51_________40\n |
147 -- 153 |
41 -- 47 |
-14.8509 kcal/mol |
2.00067 kcal/mol |
1.16388 kcal/mol |
143 154@LB@ | |@LB@5'-CGG...UGAUU ACAGA...AUC-3'@LB@ UGUGAGCAAU@LB@ ||||||||||@LB@ ACACUCGUUA@LB@3'-UUU...UCGUU CAGCA...GCG-5'@LB@ | |@LB@ 51 40@LB@@LB@@LB@Energy -11.69 kcal/mol@LB@Hybridization Energy -14.8509 kcal/mol@LB@Unfolding Energy - mRNA 2.00067 kcal/mol@LB@Unfolding Energy - sRNA 1.16388 kcal/mol@LB@@LB@Position - mRNA 144 -- 153@LB@Position - sRNA 41 -- 50@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 41 -- 47@LB@ |
60 |
0.005592 |
0.2905 |
b3577 |
yiaM |
-14.71 |
0.031138 |
209 -- 232 |
41 -- 64 |
2 3-diketo-L-gulonate TRAP transporter small permease protein |
|
_____________208______________________233\n_____________|________________________|\n5'-UUC...AAAAA______C________ACU______UAAUC...GCA-3'\n______________AAUACU_GAAGCAAU___GGCGAU\n______________||||||_||||||||___:||:||\n______________UUAUGA_CUUCGUUA___UCGUUA\n3'-UUU...AUUCA______C________CAC______CAGCA...GCG-5'\n_____________|________________________|\n_____________65_______________________40\n |
217 -- 223 |
50 -- 56 |
-21.6131 kcal/mol |
3.60615 kcal/mol |
3.30185 kcal/mol |
208 233@LB@ | |@LB@5'-UUC...AAAAA C ACU UAAUC...GCA-3'@LB@ AAUACU GAAGCAAU GGCGAU@LB@ |||||| |||||||| :||:||@LB@ UUAUGA CUUCGUUA UCGUUA@LB@3'-UUU...AUUCA C CAC CAGCA...GCG-5'@LB@ | |@LB@ 65 40@LB@@LB@@LB@Energy -14.71 kcal/mol@LB@Hybridization Energy -21.6131 kcal/mol@LB@Unfolding Energy - mRNA 3.60615 kcal/mol@LB@Unfolding Energy - sRNA 3.30185 kcal/mol@LB@@LB@Position - mRNA 209 -- 232@LB@Position - sRNA 41 -- 64@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 50 -- 56@LB@ |
51 |
0.00476 |
0.2905 |
b3607 |
cysE |
-15.05 |
0.027128 |
184 -- 209 |
34 -- 63 |
serine acetyltransferase |
|
_____________183_____________________________210\n_____________|_______________________________|\n5'-CGG...AUCUC__CG__U________________________GAAGA...CGA-3'\n______________AU__UG_GGAGUA_____AGCAAUGUCGUGU\n______________||__||_|:||:|_____||||||||||||:\n______________UA__AC_CUUCGU_____UCGUUACAGCACG\n3'-UUU...UUCAU__UG_________UACAC_____________AAAGU...GCG-5'\n_____________|_______________________________|\n_____________64______________________________33\n |
203 -- 209 |
34 -- 40 |
-26.8035 kcal/mol |
4.97985 kcal/mol |
6.76935 kcal/mol |
183 210@LB@ | |@LB@5'-CGG...AUCUC CG U GAAGA...CGA-3'@LB@ AU UG GGAGUA AGCAAUGUCGUGU@LB@ || || |:||:| ||||||||||||:@LB@ UA AC CUUCGU UCGUUACAGCACG@LB@3'-UUU...UUCAU UG UACAC AAAGU...GCG-5'@LB@ | |@LB@ 64 33@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -26.8035 kcal/mol@LB@Unfolding Energy - mRNA 4.97985 kcal/mol@LB@Unfolding Energy - sRNA 6.76935 kcal/mol@LB@@LB@Position - mRNA 184 -- 209@LB@Position - sRNA 34 -- 63@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 34 -- 40@LB@ |
125 |
0.0136 |
0.3627 |
b3647 |
ligB |
-15.20 |
0.025592 |
210 -- 279 |
1 -- 59 |
DNA ligase NAD(+)-dependent |
|
_____________209_____________________________________________________________________280\n_____________|_______________________________________________________________________|\n5'-GGC...AAGUA____U______AUUAAUA____UC________GG__AUCA___G______C_____GUCCGG_________CAGCC...AAA-3'\n______________UGGA_GGCGAU_______GGUA___UUGUGCU__CA____UCU_UGUGGG_GGUCU______CCUGGUCGC\n______________||||_:||:||_______:|:|___|:|||||__||____|||_:|:|:|_|||||______||||:||||\n______________ACCU_UCGUUA_______UCGU___AGCACGA__GU____AGA_GCGCUC_CCAGA______GGACUAGCG\n3'-UUU...UUAUG___________CAC________UAC_______AA__CCA____G____________A______________-5'\n_____________|______________________________________________________________________|\n_____________60_____________________________________________________________________1\n |
273 -- 279 |
1 -- 7 |
-52.2567 kcal/mol |
22.9457 kcal/mol |
14.1095 kcal/mol |
209 280@LB@ | |@LB@5'-GGC...AAGUA U AUUAAUA UC GG AUCA G C GUCCGG CAGCC...AAA-3'@LB@ UGGA GGCGAU GGUA UUGUGCU CA UCU UGUGGG GGUCU CCUGGUCGC@LB@ |||| :||:|| :|:| |:||||| || ||| :|:|:| ||||| ||||:||||@LB@ ACCU UCGUUA UCGU AGCACGA GU AGA GCGCUC CCAGA GGACUAGCG@LB@3'-UUU...UUAUG CAC UAC AA CCA G A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -15.20 kcal/mol@LB@Hybridization Energy -52.2567 kcal/mol@LB@Unfolding Energy - mRNA 22.9457 kcal/mol@LB@Unfolding Energy - sRNA 14.1095 kcal/mol@LB@@LB@Position - mRNA 210 -- 279@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 1 -- 7@LB@ |
59 |
0.005518 |
0.2905 |
b3663 |
yicN |
-20.80 |
0.002740 |
224 -- 256 |
26 -- 61 |
DUF1198 family protein |
|
_____________223__________________________________257\n_____________|____________________________________|\n5'-CUU...GCCAC_____C________UU__G_________________GCUGA...AUC-3'\n______________GCUGG_GGUAGUGU__GU___GUUG_GUUUUCGGGU\n______________:||||_:|:|:|||__|:___||:|_|:||||:|||\n______________UGACC_UCGUUACA__CG___CAGC_CGAAAGUCCA\n3'-UUU...CAUUA_____U________CU__UUA____A__________AGAGG...GCG-5'\n_____________|____________________________________|\n_____________62___________________________________25\n |
250 -- 256 |
26 -- 32 |
-36.0496 kcal/mol |
7.2648 kcal/mol |
7.98122 kcal/mol |
223 257@LB@ | |@LB@5'-CUU...GCCAC C UU G GCUGA...AUC-3'@LB@ GCUGG GGUAGUGU GU GUUG GUUUUCGGGU@LB@ :|||| :|:|:||| |: ||:| |:||||:|||@LB@ UGACC UCGUUACA CG CAGC CGAAAGUCCA@LB@3'-UUU...CAUUA U CU UUA A AGAGG...GCG-5'@LB@ | |@LB@ 62 25@LB@@LB@@LB@Energy -20.80 kcal/mol@LB@Hybridization Energy -36.0496 kcal/mol@LB@Unfolding Energy - mRNA 7.2648 kcal/mol@LB@Unfolding Energy - sRNA 7.98122 kcal/mol@LB@@LB@Position - mRNA 224 -- 256@LB@Position - sRNA 26 -- 61@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 26 -- 32@LB@ |
47 |
0.004313 |
0.2905 |
b3739 |
atpI |
-14.34 |
0.035947 |
179 -- 205 |
38 -- 58 |
ATP synthase membrane-bound accessory factor |
|
_____________178_________________________206\n_____________|___________________________|\n5'-GAA...UCGAA________GA____AAAAC________UGUGU...ACC-3'\n______________GGGAGCAG__GUGA_____GUGAUGUC\n______________||:||||:__||||_____|::|||||\n______________CCUUCGUU__CACU_____CGUUACAG\n3'-UUU...UAUGA________A__________________CACGA...GCG-5'\n_____________|___________________________|\n_____________59__________________________37\n |
199 -- 205 |
38 -- 44 |
-24.0387 kcal/mol |
6.48162 kcal/mol |
3.21639 kcal/mol |
178 206@LB@ | |@LB@5'-GAA...UCGAA GA AAAAC UGUGU...ACC-3'@LB@ GGGAGCAG GUGA GUGAUGUC@LB@ ||:||||: |||| |::|||||@LB@ CCUUCGUU CACU CGUUACAG@LB@3'-UUU...UAUGA A CACGA...GCG-5'@LB@ | |@LB@ 59 37@LB@@LB@@LB@Energy -14.34 kcal/mol@LB@Hybridization Energy -24.0387 kcal/mol@LB@Unfolding Energy - mRNA 6.48162 kcal/mol@LB@Unfolding Energy - sRNA 3.21639 kcal/mol@LB@@LB@Position - mRNA 179 -- 205@LB@Position - sRNA 38 -- 58@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 38 -- 44@LB@ |