| 37 |
0.003144 |
0.2776 |
b3743 |
asnC |
-18.99 |
0.005660 |
240 -- 261 |
40 -- 60 |
transcriptional activator of asnA; autorepressor |
|
_____________239____________________262\n_____________|______________________|\n5'-AUU...GCAUC_________UUAA_________CGCGC...GCG-3'\n______________CUGGAAGCA____UGGGCAAUG\n______________|||||||||____||:||||||\n______________GACCUUCGU____ACUCGUUAC\n3'-UUU...AUUAU_________UAC__________AGCAC...GCG-5'\n_____________|______________________|\n_____________61_____________________39\n |
255 -- 261 |
40 -- 46 |
-27.3577 kcal/mol |
5.06736 kcal/mol |
3.29985 kcal/mol |
239 262@LB@ | |@LB@5'-AUU...GCAUC UUAA CGCGC...GCG-3'@LB@ CUGGAAGCA UGGGCAAUG@LB@ ||||||||| ||:||||||@LB@ GACCUUCGU ACUCGUUAC@LB@3'-UUU...AUUAU UAC AGCAC...GCG-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -18.99 kcal/mol@LB@Hybridization Energy -27.3577 kcal/mol@LB@Unfolding Energy - mRNA 5.06736 kcal/mol@LB@Unfolding Energy - sRNA 3.29985 kcal/mol@LB@@LB@Position - mRNA 240 -- 261@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 181 |
0.0223 |
0.4113 |
b3770 |
ilvE |
-12.64 |
0.069830 |
250 -- 281 |
37 -- 61 |
branched-chain amino acid aminotransferase |
|
_____________249______________________________282\n_____________|________________________________|\n5'-UUU...GGUUC_______AGAC____AG___CAU_________CACGC...GCA-3'\n______________GCUGGGA____GCGA__GUG___GUGAUGUCG\n______________:||||:|____||:|__|||___|::||||||\n______________UGACCUU____CGUU__CAC___CGUUACAGC\n3'-UUU...CAUUA_______________A____U___________ACGAA...GCG-5'\n_____________|________________________________|\n_____________62_______________________________36\n |
275 -- 281 |
37 -- 43 |
-25.0056 kcal/mol |
9.06403 kcal/mol |
3.30158 kcal/mol |
249 282@LB@ | |@LB@5'-UUU...GGUUC AGAC AG CAU CACGC...GCA-3'@LB@ GCUGGGA GCGA GUG GUGAUGUCG@LB@ :||||:| ||:| ||| |::||||||@LB@ UGACCUU CGUU CAC CGUUACAGC@LB@3'-UUU...CAUUA A U ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -12.64 kcal/mol@LB@Hybridization Energy -25.0056 kcal/mol@LB@Unfolding Energy - mRNA 9.06403 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 250 -- 281@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 123 |
0.0134 |
0.3627 |
b3774 |
ilvC |
-11.90 |
0.092739 |
9 -- 41 |
1 -- 25 |
ketol-acid reductoisomerase NAD(P)-binding |
|
_____________8__________________________________42\n_____________|__________________________________|\n___5'-AUGGCGGC_______CAGAUGCAG__A_______A_______GUAAA...GCU-3'\n______________UUUCCGC_________GA_GGUUUUC__GAUCGC\n______________|:|||||_________||_|||:|||__||||||\n______________AGAGGCG_________CU_CCAGAAG__CUAGCG\n3'-UUU...GUCCA__________________C_______GA______-5'\n_____________|_________________________________|\n_____________26________________________________1\n |
28 -- 34 |
9 -- 15 |
-28.1375 kcal/mol |
8.51703 kcal/mol |
7.71912 kcal/mol |
8 42@LB@ | |@LB@ 5'-AUGGCGGC CAGAUGCAG A A GUAAA...GCU-3'@LB@ UUUCCGC GA GGUUUUC GAUCGC@LB@ |:||||| || |||:||| ||||||@LB@ AGAGGCG CU CCAGAAG CUAGCG@LB@3'-UUU...GUCCA C GA -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -11.90 kcal/mol@LB@Hybridization Energy -28.1375 kcal/mol@LB@Unfolding Energy - mRNA 8.51703 kcal/mol@LB@Unfolding Energy - sRNA 7.71912 kcal/mol@LB@@LB@Position - mRNA 9 -- 41@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 29 |
0.002852 |
0.2776 |
b3779 |
gpp |
-14.27 |
0.036904 |
25 -- 63 |
25 -- 66 |
guanosine pentaphosphatase/exopolyphosphatase |
|
_____________24__________________________________________64\n_____________|___________________________________________|\n5'-GCC...UCCGC__C_______C___UCC___C_____C_______G________AAAUA...UGA-3'\n______________GU_GUACUGG__GC_____G_GUAAU_GUCGU_C_UUCAGGUU\n______________||_:||||||__||_____|_|:|||_|||||_|_||||||||\n______________CA_UAUGACC__CG_____C_CGUUA_CAGCA_G_AAGUCCAA\n3'-UUU...CGAUU__U_______UU__UUACA_U___________C_A________GAGGC...GCG-5'\n_____________|___________________________________________|\n_____________67__________________________________________24\n |
57 -- 63 |
25 -- 31 |
-32.1436 kcal/mol |
9.87719 kcal/mol |
7.99254 kcal/mol |
24 64@LB@ | |@LB@5'-GCC...UCCGC C C UCC C C G AAAUA...UGA-3'@LB@ GU GUACUGG GC G GUAAU GUCGU C UUCAGGUU@LB@ || :|||||| || | |:||| ||||| | ||||||||@LB@ CA UAUGACC CG C CGUUA CAGCA G AAGUCCAA@LB@3'-UUU...CGAUU U UU UUACA U C A GAGGC...GCG-5'@LB@ | |@LB@ 67 24@LB@@LB@@LB@Energy -14.27 kcal/mol@LB@Hybridization Energy -32.1436 kcal/mol@LB@Unfolding Energy - mRNA 9.87719 kcal/mol@LB@Unfolding Energy - sRNA 7.99254 kcal/mol@LB@@LB@Position - mRNA 25 -- 63@LB@Position - sRNA 25 -- 66@LB@Position Seed - mRNA 57 -- 63@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 199 |
0.02505 |
0.4226 |
b3794 |
wecG |
-14.56 |
0.032964 |
62 -- 86 |
1 -- 25 |
UDP-N-acetyl-D-mannosaminuronic acid transferase |
|
_____________61_________________________87\n_____________|__________________________|\n5'-UUC...GUUUG____A____U__________U_____GGUCU...ACG-3'\n______________UCUC_CGCG__GGUCUUUUU_AUCGU\n______________||||_||||__||||||::|_||||:\n______________AGAG_GCGC__CCAGAAGGA_UAGCG\n3'-UUU...GUCCA_________UC_________C_____-5'\n_____________|_________________________|\n_____________26________________________1\n |
74 -- 80 |
7 -- 13 |
-28.4933 kcal/mol |
6.21356 kcal/mol |
7.71912 kcal/mol |
61 87@LB@ | |@LB@5'-UUC...GUUUG A U U GGUCU...ACG-3'@LB@ UCUC CGCG GGUCUUUUU AUCGU@LB@ |||| |||| ||||||::| ||||:@LB@ AGAG GCGC CCAGAAGGA UAGCG@LB@3'-UUU...GUCCA UC C -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -14.56 kcal/mol@LB@Hybridization Energy -28.4933 kcal/mol@LB@Unfolding Energy - mRNA 6.21356 kcal/mol@LB@Unfolding Energy - sRNA 7.71912 kcal/mol@LB@@LB@Position - mRNA 62 -- 86@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 92 |
0.009626 |
0.3393 |
b3811 |
xerC |
-15.13 |
0.026359 |
57 -- 92 |
33 -- 64 |
site-specific tyrosine recombinase |
|
_____________56___________________________________93\n_____________|____________________________________|\n5'-CCA...AUGUC______G__________C___UUUG___________GUUUA...UUG-3'\n______________GAUGCU_GGAAGCGAUG_UGA____GGUGUCGUGCU\n______________:||:||_||||||:|||_|||____::|||||||||\n______________UUAUGA_CCUUCGUUAC_ACU____UUACAGCACGA\n3'-UUU...AUUCA_____________________CG_____________AAGUC...GCG-5'\n_____________|____________________________________|\n_____________65___________________________________32\n |
83 -- 89 |
36 -- 42 |
-41.1335 kcal/mol |
19.2369 kcal/mol |
6.76965 kcal/mol |
56 93@LB@ | |@LB@5'-CCA...AUGUC G C UUUG GUUUA...UUG-3'@LB@ GAUGCU GGAAGCGAUG UGA GGUGUCGUGCU@LB@ :||:|| ||||||:||| ||| ::|||||||||@LB@ UUAUGA CCUUCGUUAC ACU UUACAGCACGA@LB@3'-UUU...AUUCA CG AAGUC...GCG-5'@LB@ | |@LB@ 65 32@LB@@LB@@LB@Energy -15.13 kcal/mol@LB@Hybridization Energy -41.1335 kcal/mol@LB@Unfolding Energy - mRNA 19.2369 kcal/mol@LB@Unfolding Energy - sRNA 6.76965 kcal/mol@LB@@LB@Position - mRNA 57 -- 92@LB@Position - sRNA 33 -- 64@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 133 |
0.0147 |
0.3709 |
b3832 |
rmuC |
-11.93 |
0.091595 |
31 -- 71 |
21 -- 63 |
DNA recombination protein |
|
_____________30________________________________________________72\n_____________|_________________________________________________|\n5'-AAA...AAAUC___G_________________C______CU___GUAA___UC_______UGUCU...AGC-3'\n______________GUG_UGGAAGC______GGCG__GUCGU__GCU____UUC___UUCUCC\n______________:|:_|||||||______:||:__|||||__|||____|||___||||||\n______________UAU_ACCUUCG______UCGU__CAGCA__CGA____AAG___AAGAGG\n3'-UUU...UUCAU___G_______UUACAC____UA_________________UCC______CGCUC...GCG-5'\n_____________|_________________________________________________|\n_____________64________________________________________________20\n |
35 -- 41 |
53 -- 59 |
-30.4211 kcal/mol |
10.4952 kcal/mol |
7.99187 kcal/mol |
30 72@LB@ | |@LB@5'-AAA...AAAUC G C CU GUAA UC UGUCU...AGC-3'@LB@ GUG UGGAAGC GGCG GUCGU GCU UUC UUCUCC@LB@ :|: ||||||| :||: ||||| ||| ||| ||||||@LB@ UAU ACCUUCG UCGU CAGCA CGA AAG AAGAGG@LB@3'-UUU...UUCAU G UUACAC UA UCC CGCUC...GCG-5'@LB@ | |@LB@ 64 20@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -30.4211 kcal/mol@LB@Unfolding Energy - mRNA 10.4952 kcal/mol@LB@Unfolding Energy - sRNA 7.99187 kcal/mol@LB@@LB@Position - mRNA 31 -- 71@LB@Position - sRNA 21 -- 63@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 4 |
0.0001495 |
0.1256 |
b3867 |
hemN |
-18.37 |
0.007265 |
188 -- 239 |
3 -- 58 |
coproporphyrinogen III oxidase SAM and NAD(P)H dependent oxygen-independent |
|
_____________187_________________________________________________________240\n_____________|___________________________________________________________|\n5'-CGG...CCAUC_____G___________________A_____CAAA____ACU___A___GGC_______CAGAA...CAG-3'\n______________GGAAG_A__GUGAGC_AUGUC_UGU___CAG_____UCG___GGG_UCU___CCUGAUC\n______________|||||_|__||||||_|||||_||:___|||_____:||___|||_|||___|||||||\n______________CCUUC_U__CACUCG_UACAG_ACG___GUC_____GGC___CCC_AGA___GGACUAG\n3'-UUU...UAUGA_____G_UA______U_____C___AAA___CAAGA___GCU_______A_________CG-5'\n_____________|___________________________________________________________|\n_____________59__________________________________________________________2\n |
233 -- 239 |
3 -- 9 |
-47.0013 kcal/mol |
14.5919 kcal/mol |
14.0436 kcal/mol |
187 240@LB@ | |@LB@5'-CGG...CCAUC G A CAAA ACU A GGC CAGAA...CAG-3'@LB@ GGAAG A GUGAGC AUGUC UGU CAG UCG GGG UCU CCUGAUC@LB@ ||||| | |||||| ||||| ||: ||| :|| ||| ||| |||||||@LB@ CCUUC U CACUCG UACAG ACG GUC GGC CCC AGA GGACUAG@LB@3'-UUU...UAUGA G UA U C AAA CAAGA GCU A CG-5'@LB@ | |@LB@ 59 2@LB@@LB@@LB@Energy -18.37 kcal/mol@LB@Hybridization Energy -47.0013 kcal/mol@LB@Unfolding Energy - mRNA 14.5919 kcal/mol@LB@Unfolding Energy - sRNA 14.0436 kcal/mol@LB@@LB@Position - mRNA 188 -- 239@LB@Position - sRNA 3 -- 58@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 40 |
0.003423 |
0.2776 |
b3901 |
rhaM |
-14.12 |
0.039141 |
284 -- 296 |
49 -- 61 |
L-rhamnose mutarotase |
|
_____________283___________297\n_____________|_____________|\n5'-ACG...CCAGA_____________CUGA-3'\n______________ACUGGAAGCAGUG\n______________||||||||||:||\n______________UGACCUUCGUUAC\n3'-UUU...CAUUA_____________ACUCG...GCG-5'\n_____________|_____________|\n_____________62____________48\n |
290 -- 296 |
49 -- 55 |
-21.3506 kcal/mol |
4.21776 kcal/mol |
3.00866 kcal/mol |
283 297@LB@ | |@LB@5'-ACG...CCAGA CUGA-3'@LB@ ACUGGAAGCAGUG@LB@ ||||||||||:||@LB@ UGACCUUCGUUAC@LB@3'-UUU...CAUUA ACUCG...GCG-5'@LB@ | |@LB@ 62 48@LB@@LB@@LB@Energy -14.12 kcal/mol@LB@Hybridization Energy -21.3506 kcal/mol@LB@Unfolding Energy - mRNA 4.21776 kcal/mol@LB@Unfolding Energy - sRNA 3.00866 kcal/mol@LB@@LB@Position - mRNA 284 -- 296@LB@Position - sRNA 49 -- 61@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 49 -- 55@LB@ |
| 95 |
0.009964 |
0.3393 |
b3902 |
rhaD |
-16.21 |
0.017174 |
243 -- 283 |
43 -- 89 |
rhamnulose-1-phosphate aldolase |
|
_____________242_______________________________________________284\n_____________|_________________________________________________|\n5'-AGA...UGAUC_______C____GA__C________AAG_____________________CAACG...UGA-3'\n______________AAAGCCA_CACC__CG_CUGGCUGA_____GCUGGGA______UGAGCG\n______________|||||||_||||__||_||||||:|_____:||||:|______|||||:\n______________UUUCGGU_GUGG__GC_GACCGAUU_____UGACCUU______ACUCGU\n__________3'-U_______C________C________CAUUA_______CGUUAC______UACAG...GCG-5'\n_____________|_________________________________________________|\n_____________90________________________________________________42\n |
271 -- 277 |
55 -- 61 |
-44.1539 kcal/mol |
13.0365 kcal/mol |
14.9102 kcal/mol |
242 284@LB@ | |@LB@5'-AGA...UGAUC C GA C AAG CAACG...UGA-3'@LB@ AAAGCCA CACC CG CUGGCUGA GCUGGGA UGAGCG@LB@ ||||||| |||| || ||||||:| :||||:| |||||:@LB@ UUUCGGU GUGG GC GACCGAUU UGACCUU ACUCGU@LB@ 3'-U C C CAUUA CGUUAC UACAG...GCG-5'@LB@ | |@LB@ 90 42@LB@@LB@@LB@Energy -16.21 kcal/mol@LB@Hybridization Energy -44.1539 kcal/mol@LB@Unfolding Energy - mRNA 13.0365 kcal/mol@LB@Unfolding Energy - sRNA 14.9102 kcal/mol@LB@@LB@Position - mRNA 243 -- 283@LB@Position - sRNA 43 -- 89@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 55 -- 61@LB@ |
