182 |
0.008397 |
0.1751 |
bsu38410 |
sacX |
-16.96 |
0.012854 |
69 -- 151 |
101 -- 169 |
negative regulator of SacY activity |
|
_____________68_____________________________________________________________________________________152\n_____________|______________________________________________________________________________________|\n5'-ACA...UCUCA_____CG_________C_______U________AUUUU____C___AUUUCUCACUUUU_____UU____A______AC_______UUGAU...UAA-3'\n______________UGCUC__UCGUCGACG_GGGCAUU____UUGUC_____CAGC_GGU_____________UUCAU____UG_UUGUCA__UUUUCAU\n______________|:|||__||:||:||:_||:||||____|||||_____||||_:||_____________|:|||____||_||||||__||:||||\n______________AUGAG__AGUAGUUGU_CCUGUAA____AACAG_____GUCG_UCA_____________AGGUA____AC_AACAGU__AAGAGUA\n3'-AUU...AAAAA_____A__________________CUGU_____GC_______U_____________________UAUU_________GA_______GAAGU...CAA-5'\n_____________|______________________________________________________________________________________|\n_____________170____________________________________________________________________________________100\n |
143 -- 149 |
103 -- 109 |
-47.5037 kcal/mol |
18.4019 kcal/mol |
14.5039 kcal/mol |
68 152@LB@ | |@LB@5'-ACA...UCUCA CG C U AUUUU C AUUUCUCACUUUU UU A AC UUGAU...UAA-3'@LB@ UGCUC UCGUCGACG GGGCAUU UUGUC CAGC GGU UUCAU UG UUGUCA UUUUCAU@LB@ |:||| ||:||:||: ||:|||| ||||| |||| :|| |:||| || |||||| ||:||||@LB@ AUGAG AGUAGUUGU CCUGUAA AACAG GUCG UCA AGGUA AC AACAGU AAGAGUA@LB@3'-AUU...AAAAA A CUGU GC U UAUU GA GAAGU...CAA-5'@LB@ | |@LB@ 170 100@LB@@LB@@LB@Energy -16.96 kcal/mol@LB@Hybridization Energy -47.5037 kcal/mol@LB@Unfolding Energy - mRNA 18.4019 kcal/mol@LB@Unfolding Energy - sRNA 14.5039 kcal/mol@LB@@LB@Position - mRNA 69 -- 151@LB@Position - sRNA 101 -- 169@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 103 -- 109@LB@ |
65 |
0.002089 |
0.123 |
bsu15330 |
sigG |
-7.32 |
0.735765 |
1 -- 8 |
133 -- 140 |
RNA polymerase sigma-G factor |
|
______________1_______9\n______________|_______|\n___________5'-________UUGAG...AUG-3'\n______________UUCGCGGC\n______________|:|||:||\n______________AGGCGUCG\n3'-AUU...GUAAC________UUCAA...CAA-5'\n_____________|________|\n_____________141______132\n |
2 -- 8 |
133 -- 139 |
-12.0754 kcal/mol |
1.63369 kcal/mol |
4.3229 kcal/mol |
1 9@LB@ | |@LB@ 5'- UUGAG...AUG-3'@LB@ UUCGCGGC@LB@ |:|||:||@LB@ AGGCGUCG@LB@3'-AUU...GUAAC UUCAA...CAA-5'@LB@ | |@LB@ 141 132@LB@@LB@@LB@Energy -7.32 kcal/mol@LB@Hybridization Energy -12.0754 kcal/mol@LB@Unfolding Energy - mRNA 1.63369 kcal/mol@LB@Unfolding Energy - sRNA 4.3229 kcal/mol@LB@@LB@Position - mRNA 1 -- 8@LB@Position - sRNA 133 -- 140@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 133 -- 139@LB@ |
21 |
0.0005858 |
0.1011 |
bsu27120 |
sigV |
-13.38 |
0.071859 |
12 -- 26 |
38 -- 54 |
RNA polymerase sigma factor SigV |
|
______________12__________________________27\n______________|___________________________|\n___________5'-______GUUUG_________________AAAAC...AAG-3'\n______________AAUAAU_____UCAUCUCUUA__CCCCA\n______________||:|||_____:|||||||||__|||||\n______________UUGUUA_____GGUAGAGAAU__GGGGU\n3'-AUU...ACCGU______GCAUG__________AA_____AAAGA...CAA-5'\n_____________|____________________________|\n_____________55___________________________37\n |
15 -- 21 |
45 -- 51 |
-23.0819 kcal/mol |
1.75763 kcal/mol |
10.671 kcal/mol |
12 27@LB@ | |@LB@ 5'- GUUUG AAAAC...AAG-3'@LB@ AAUAAU UCAUCUCUUA CCCCA@LB@ ||:||| :||||||||| |||||@LB@ UUGUUA GGUAGAGAAU GGGGU@LB@3'-AUU...ACCGU GCAUG AA AAAGA...CAA-5'@LB@ | |@LB@ 55 37@LB@@LB@@LB@Energy -13.38 kcal/mol@LB@Hybridization Energy -23.0819 kcal/mol@LB@Unfolding Energy - mRNA 1.75763 kcal/mol@LB@Unfolding Energy - sRNA 10.671 kcal/mol@LB@@LB@Position - mRNA 12 -- 26@LB@Position - sRNA 38 -- 54@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 45 -- 51@LB@ |
12 |
0.0004273 |
0.1011 |
bsu13640 |
spo0E |
-21.66 |
0.001221 |
136 -- 180 |
32 -- 78 |
aspartyl-phosphate phosphatase Spo0E |
|
_____________135________________________________________________181\n_____________|__________________________________________________|\n5'-GGC...UAAUC______AAU__________A______A___AAA_________________AGCGG...AUG-3'\n______________UGUAAU____GC__ACAAU___ACCC_AUC___CUUGUUUCCUAUUUCUU\n______________||:|||____||__|||||___||||_|||___|||:||:||:|||||||\n______________ACGUUA____CG__UGUUA___UGGG_UAG___GAAUAAGGGGUAAAGAA\n3'-AUU...AAGCA______GAAC__UU_____GCA________A___________________ACUUU...CAA-5'\n_____________|__________________________________________________|\n_____________79_________________________________________________31\n |
172 -- 178 |
34 -- 40 |
-36.2602 kcal/mol |
3.78665 kcal/mol |
13.8985 kcal/mol |
135 181@LB@ | |@LB@5'-GGC...UAAUC AAU A A AAA AGCGG...AUG-3'@LB@ UGUAAU GC ACAAU ACCC AUC CUUGUUUCCUAUUUCUU@LB@ ||:||| || ||||| |||| ||| |||:||:||:|||||||@LB@ ACGUUA CG UGUUA UGGG UAG GAAUAAGGGGUAAAGAA@LB@3'-AUU...AAGCA GAAC UU GCA A ACUUU...CAA-5'@LB@ | |@LB@ 79 31@LB@@LB@@LB@Energy -21.66 kcal/mol@LB@Hybridization Energy -36.2602 kcal/mol@LB@Unfolding Energy - mRNA 3.78665 kcal/mol@LB@Unfolding Energy - sRNA 13.8985 kcal/mol@LB@@LB@Position - mRNA 136 -- 180@LB@Position - sRNA 32 -- 78@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 34 -- 40@LB@ |
52 |
0.001732 |
0.1212 |
bsu29530 |
sppA |
-10.15 |
0.295539 |
2 -- 29 |
39 -- 81 |
signal peptide peptidase SppA |
|
_____________1________________________________________________________30\n_____________|________________________________________________________|\n5'-GCG...CUCUG_G______C____UGUCUAUU_____CAG__________GA_______________GCGUC...AAG-3'\n______________G_GAUUUU_GGCG________AUCGU___CAUCUC_UAU_____GUUUCUUUGAAA\n______________|_:||:||_|||:________|||||___||||||_|||_____:|||||||||||\n______________C_UUAGAA_CCGU________UAGCA___GUAGAG_AUA_____UAAAGAAACUUU\n3'-AUU...AGCAA_G___________UUGU_________UGG______A___AGGGG____________AAACU...CAA-5'\n_____________|________________________________________________________|\n_____________82_______________________________________________________38\n |
284 -- 290 |
28 -- 34 |
-34.8894 kcal/mol |
12.7856 kcal/mol |
14.4529 kcal/mol |
1 30@LB@ | |@LB@5'-GCG...CUCUG G C UGUCUAUU CAG GA GCGUC...AAG-3'@LB@ G GAUUUU GGCG AUCGU CAUCUC UAU GUUUCUUUGAAA@LB@ | :||:|| |||: ||||| |||||| ||| :|||||||||||@LB@ C UUAGAA CCGU UAGCA GUAGAG AUA UAAAGAAACUUU@LB@3'-AUU...AGCAA G UUGU UGG A AGGGG AAACU...CAA-5'@LB@ | |@LB@ 82 38@LB@@LB@@LB@Energy -10.15 kcal/mol@LB@Hybridization Energy -34.8894 kcal/mol@LB@Unfolding Energy - mRNA 12.7856 kcal/mol@LB@Unfolding Energy - sRNA 14.4529 kcal/mol@LB@@LB@Position - mRNA 2 -- 29@LB@Position - sRNA 39 -- 81@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 28 -- 34@LB@ |
66 |
0.002095 |
0.123 |
bsu28660 |
sspI |
-12.58 |
0.103691 |
257 -- 278 |
56 -- 77 |
small acid-soluble spore protein I |
|
_____________256_____________________279\n_____________|_______________________|\n5'-UUG...CAGGA_________A___U_________GAUGC...AAG-3'\n______________GCAG_CUUG_GCA_ACAAUCGUA\n______________|||:_||||_|||_|||||||||\n______________CGUU_GAAC_CGU_UGUUAGCAU\n3'-AUU...AGCAA____A________U_________GGGUA...CAA-5'\n_____________|_______________________|\n_____________78______________________55\n |
271 -- 277 |
57 -- 63 |
-25.139 kcal/mol |
6.36558 kcal/mol |
6.79705 kcal/mol |
256 279@LB@ | |@LB@5'-UUG...CAGGA A U GAUGC...AAG-3'@LB@ GCAG CUUG GCA ACAAUCGUA@LB@ |||: |||| ||| |||||||||@LB@ CGUU GAAC CGU UGUUAGCAU@LB@3'-AUU...AGCAA A U GGGUA...CAA-5'@LB@ | |@LB@ 78 55@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -25.139 kcal/mol@LB@Unfolding Energy - mRNA 6.36558 kcal/mol@LB@Unfolding Energy - sRNA 6.79705 kcal/mol@LB@@LB@Position - mRNA 257 -- 278@LB@Position - sRNA 56 -- 77@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 57 -- 63@LB@ |
147 |
0.006774 |
0.1741 |
bsu08550 |
sspK |
-14.99 |
0.033457 |
165 -- 208 |
137 -- 183 |
small acid-soluble spore protein K |
|
_____________164_____________________________209\n_____________|_______________________________|\n5'-UUU...UUGAU___GAACC___G_____________G_____AAAUA...ACG-3'\n______________CUC_____UAG_GGGAUAU_GACAU_GUCCG\n______________|||_____:|:_:|||:||_|||||_|||||\n______________GAG_____GUU_UCCUGUA_CUGUA_CAGGC\n3'-AUU...AAAAU___AAGUA___G_______A_____A_____GUCGU...CAA-5'\n_____________|_______________________________|\n_____________184_____________________________136\n |
191 -- 197 |
149 -- 155 |
-28.8408 kcal/mol |
8.70873 kcal/mol |
7.49334 kcal/mol |
164 209@LB@ | |@LB@5'-UUU...UUGAU GAACC G G AAAUA...ACG-3'@LB@ CUC UAG GGGAUAU GACAU GUCCG@LB@ ||| :|: :|||:|| ||||| |||||@LB@ GAG GUU UCCUGUA CUGUA CAGGC@LB@3'-AUU...AAAAU AAGUA G A A GUCGU...CAA-5'@LB@ | |@LB@ 184 136@LB@@LB@@LB@Energy -14.99 kcal/mol@LB@Hybridization Energy -28.8408 kcal/mol@LB@Unfolding Energy - mRNA 8.70873 kcal/mol@LB@Unfolding Energy - sRNA 7.49334 kcal/mol@LB@@LB@Position - mRNA 165 -- 208@LB@Position - sRNA 137 -- 183@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 149 -- 155@LB@ |
199 |
0.00902 |
0.1751 |
bsu30990 |
thiT |
-13.50 |
0.067771 |
270 -- 291 |
126 -- 147 |
thiamine transporter ThiT |
|
_____________269_____________________292\n_____________|_______________________|\n5'-AUG...UUUUA______________G__U_____UUAGC...UGC-3'\n______________GACAUUGUCU_CAG_AA_GUUUC\n______________|||||||||:_|||_||_|||:|\n______________CUGUAACAGG_GUC_UU_CAAGG\n3'-AUU...UGUAA__________C___G________UAUAU...CAA-5'\n_____________|_______________________|\n_____________148_____________________125\n |
273 -- 279 |
138 -- 144 |
-23.3567 kcal/mol |
5.16312 kcal/mol |
6.80985 kcal/mol |
269 292@LB@ | |@LB@5'-AUG...UUUUA G U UUAGC...UGC-3'@LB@ GACAUUGUCU CAG AA GUUUC@LB@ |||||||||: ||| || |||:|@LB@ CUGUAACAGG GUC UU CAAGG@LB@3'-AUU...UGUAA C G UAUAU...CAA-5'@LB@ | |@LB@ 148 125@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -23.3567 kcal/mol@LB@Unfolding Energy - mRNA 5.16312 kcal/mol@LB@Unfolding Energy - sRNA 6.80985 kcal/mol@LB@@LB@Position - mRNA 270 -- 291@LB@Position - sRNA 126 -- 147@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 138 -- 144@LB@ |
39 |
0.001272 |
0.1206 |
bsu38090 |
vpr |
-13.65 |
0.063330 |
246 -- 286 |
133 -- 174 |
minor extracellular protease vpr |
|
_____________245__________________________________________287\n_____________|____________________________________________|\n5'-AUU...CUUAU_______G_______C__________ACG______CAG______UCCGG...CAA-3'\n______________UUUUUGC___UUAUC_ACAGG_CAUU___GGCGUU____GCAGC\n______________|||||:|___|:|||_|||||_||||___|:|:||____|||||\n______________AAAAAUG___AGUAG_UGUCC_GUAA___CUGUAA____CGUCG\n3'-AUU...CGAAA_______AGA_____U_____U_____________CAGG_____UUCAA...CAA-5'\n_____________|____________________________________________|\n_____________175__________________________________________132\n |
247 -- 253 |
167 -- 173 |
-30.59 kcal/mol |
9.01512 kcal/mol |
10.7895 kcal/mol |
245 287@LB@ | |@LB@5'-AUU...CUUAU G C ACG CAG UCCGG...CAA-3'@LB@ UUUUUGC UUAUC ACAGG CAUU GGCGUU GCAGC@LB@ |||||:| |:||| ||||| |||| |:|:|| |||||@LB@ AAAAAUG AGUAG UGUCC GUAA CUGUAA CGUCG@LB@3'-AUU...CGAAA AGA U U CAGG UUCAA...CAA-5'@LB@ | |@LB@ 175 132@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -30.59 kcal/mol@LB@Unfolding Energy - mRNA 9.01512 kcal/mol@LB@Unfolding Energy - sRNA 10.7895 kcal/mol@LB@@LB@Position - mRNA 246 -- 286@LB@Position - sRNA 133 -- 174@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 167 -- 173@LB@ |
166 |
0.007737 |
0.1751 |
bsu10770 |
wprA |
-9.60 |
0.364837 |
176 -- 232 |
111 -- 164 |
cell wall-associated protease |
|
_____________175_________________________________________________________233\n_____________|___________________________________________________________|\n5'-CUG...GGAGA_______UUUU______G_GAUA____GAAA_____AAAA_____GCUCG______G__GGCAG...GCG-3'\n______________UUCAUUA____GCAGGA_G____ACAU____CGCAG_____UUCA______GUUGU_GC\n______________|||||:|____:|||||_:____||||____|||||_____|:||______|||||_:|\n______________AAGUAGU____UGUCCU_U____UGUA____GCGUC_____AGGU______CAACA_UG\n3'-AUU...AUGAG_________________G_AAC_____ACAG_____GUUCA____AUAUUA_____G__AAAGA...CAA-5'\n_____________|___________________________________________________________|\n_____________165_________________________________________________________110\n |
176 -- 182 |
158 -- 164 |
-36.1081 kcal/mol |
15.1078 kcal/mol |
11.9485 kcal/mol |
175 233@LB@ | |@LB@5'-CUG...GGAGA UUUU G GAUA GAAA AAAA GCUCG G GGCAG...GCG-3'@LB@ UUCAUUA GCAGGA G ACAU CGCAG UUCA GUUGU GC@LB@ |||||:| :||||| : |||| ||||| |:|| ||||| :|@LB@ AAGUAGU UGUCCU U UGUA GCGUC AGGU CAACA UG@LB@3'-AUU...AUGAG G AAC ACAG GUUCA AUAUUA G AAAGA...CAA-5'@LB@ | |@LB@ 165 110@LB@@LB@@LB@Energy -9.60 kcal/mol@LB@Hybridization Energy -36.1081 kcal/mol@LB@Unfolding Energy - mRNA 15.1078 kcal/mol@LB@Unfolding Energy - sRNA 11.9485 kcal/mol@LB@@LB@Position - mRNA 176 -- 232@LB@Position - sRNA 111 -- 164@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 158 -- 164@LB@ |