| 131 |
0.006003 |
0.1741 |
bsu37510 |
pbpG |
-10.90 |
0.216982 |
70 -- 106 |
84 -- 108 |
penicillin-binding protein 2D |
|
_____________69____________________________________107\n_____________|_____________________________________|\n5'-UGU...UGAAA___________CCUAAGGAAA_____UAGA_______GGGGA...UGU-3'\n______________UCUCAUUUUCA__________AAGUA____GGAUGGC\n______________||||||:||||__________|||||____|:|||||\n______________AGAGUAGAAGU__________UUCAU____CUUACCG\n3'-AUU...GUGAA__________________________UA_________AAGCA...CAA-5'\n_____________|_____________________________________|\n_____________109___________________________________83\n |
100 -- 106 |
84 -- 90 |
-24.2284 kcal/mol |
7.40636 kcal/mol |
9.09036 kcal/mol |
69 107@LB@ | |@LB@5'-UGU...UGAAA CCUAAGGAAA UAGA GGGGA...UGU-3'@LB@ UCUCAUUUUCA AAGUA GGAUGGC@LB@ ||||||:|||| ||||| |:|||||@LB@ AGAGUAGAAGU UUCAU CUUACCG@LB@3'-AUU...GUGAA UA AAGCA...CAA-5'@LB@ | |@LB@ 109 83@LB@@LB@@LB@Energy -10.90 kcal/mol@LB@Hybridization Energy -24.2284 kcal/mol@LB@Unfolding Energy - mRNA 7.40636 kcal/mol@LB@Unfolding Energy - sRNA 9.09036 kcal/mol@LB@@LB@Position - mRNA 70 -- 106@LB@Position - sRNA 84 -- 108@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 84 -- 90@LB@ |
| 98 |
0.003906 |
0.1544 |
bsu29990 |
pbuO |
-11.33 |
0.180719 |
218 -- 233 |
123 -- 137 |
guanine/hypoxanthine permease PbuO |
|
_____________217______________234\n_____________|________________|\n5'-GGU...AAAGA_______ACA______AAGCA...CGG-3'\n______________GCAGCAA___UCCAUA\n______________|||||||___||||||\n______________CGUCGUU___AGGUAU\n3'-AUU...ACAGG_______CA_______AUUAC...CAA-5'\n_____________|________________|\n_____________138______________122\n |
218 -- 224 |
131 -- 137 |
-16.3971 kcal/mol |
2.46726 kcal/mol |
3.21202 kcal/mol |
217 234@LB@ | |@LB@5'-GGU...AAAGA ACA AAGCA...CGG-3'@LB@ GCAGCAA UCCAUA@LB@ ||||||| ||||||@LB@ CGUCGUU AGGUAU@LB@3'-AUU...ACAGG CA AUUAC...CAA-5'@LB@ | |@LB@ 138 122@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -16.3971 kcal/mol@LB@Unfolding Energy - mRNA 2.46726 kcal/mol@LB@Unfolding Energy - sRNA 3.21202 kcal/mol@LB@@LB@Position - mRNA 218 -- 233@LB@Position - sRNA 123 -- 137@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 83 |
0.002931 |
0.1368 |
bsu18650 |
pelB |
-17.38 |
0.010445 |
17 -- 103 |
38 -- 142 |
pectin lyase |
|
_____________16________________________________________________________________________________________________________________104\n_____________|_________________________________________________________________________________________________________________|\n5'-AGG...UAAGC_________U_______G_____UCAA____________CUA_________________________A___U____UU__________________________AGUAA____ACAUU...CAA-3'\n______________UG_CUGCAG_CAA___C_GUGUA______UC_CUUUCUU___UUUCAA______________UUGUU_GUA_GUCU__UGGC__GCAAUC___UCUAUUUUUUA_____CCCA\n______________||_|:||||_|||___|_:|:||______||_||||||:___:|||||______________|:|||_|:|_:|||__||||__:|||||___:|:||:|:|||_____||||\n______________AC_GGCGUC_GUU___G_UAUAU______AG_GAAAGAG___GAAGUU______________AGCAA_CGU_UAGA__ACCG__UGUUAG___GGGUAGAGAAU_____GGGU\n3'-AUU...CUGUA__A__________CAA_G_____UACAAC__U_______UA_______UCAUUACUUACCGA____________________UU______CAU___________AAG______AAAGA...CAA-5'\n_____________|_________________________________________________________________________________________________________________|\n_____________143_______________________________________________________________________________________________________________37\n |
42 -- 48 |
105 -- 111 |
-52.303 kcal/mol |
11.0023 kcal/mol |
27.6117 kcal/mol |
16 104@LB@ | |@LB@5'-AGG...UAAGC U G UCAA CUA A U UU AGUAA ACAUU...CAA-3'@LB@ UG CUGCAG CAA C GUGUA UC CUUUCUU UUUCAA UUGUU GUA GUCU UGGC GCAAUC UCUAUUUUUUA CCCA@LB@ || |:|||| ||| | :|:|| || ||||||: :||||| |:||| |:| :||| |||| :||||| :|:||:|:||| ||||@LB@ AC GGCGUC GUU G UAUAU AG GAAAGAG GAAGUU AGCAA CGU UAGA ACCG UGUUAG GGGUAGAGAAU GGGU@LB@3'-AUU...CUGUA A CAA G UACAAC U UA UCAUUACUUACCGA UU CAU AAG AAAGA...CAA-5'@LB@ | |@LB@ 143 37@LB@@LB@@LB@Energy -17.38 kcal/mol@LB@Hybridization Energy -52.303 kcal/mol@LB@Unfolding Energy - mRNA 11.0023 kcal/mol@LB@Unfolding Energy - sRNA 27.6117 kcal/mol@LB@@LB@Position - mRNA 17 -- 103@LB@Position - sRNA 38 -- 142@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 105 -- 111@LB@ |
| 29 |
0.000814 |
0.1059 |
bsu35860 |
pgdS |
-7.84 |
0.648005 |
23 -- 34 |
130 -- 140 |
gamma-dl-glutamyl hydrolase |
|
______________23________________________________35\n______________|_________________________________|\n___________5'-________GGAAAUGAAUAAAA___A________AAGAA...AUA-3'\n______________AUUGAUAU______________UCC_GCAGCAGG\n______________|||||:||______________|||_||||||:|\n______________UAACUGUA______________AGG_CGUCGUUC\n3'-AUU...UCCUG________AC________________________AAGGU...CAA-5'\n_____________|__________________________________|\n_____________141________________________________129\n |
28 -- 34 |
130 -- 136 |
-20.8842 kcal/mol |
7.79874 kcal/mol |
6.50607 kcal/mol |
23 35@LB@ | |@LB@ 5'- GGAAAUGAAUAAAA A AAGAA...AUA-3'@LB@ AUUGAUAU UCC GCAGCAGG@LB@ |||||:|| ||| ||||||:|@LB@ UAACUGUA AGG CGUCGUUC@LB@3'-AUU...UCCUG AC AAGGU...CAA-5'@LB@ | |@LB@ 141 129@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -20.8842 kcal/mol@LB@Unfolding Energy - mRNA 7.79874 kcal/mol@LB@Unfolding Energy - sRNA 6.50607 kcal/mol@LB@@LB@Position - mRNA 23 -- 34@LB@Position - sRNA 130 -- 140@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 130 -- 136@LB@ |
| 140 |
0.006451 |
0.1741 |
bsu29090 |
polA |
-11.51 |
0.167440 |
58 -- 84 |
30 -- 56 |
DNA polymerase I |
|
_____________57________________85\n_____________|_________________|\n5'-AUG...CGGGA________G________GUCCU...AUA-3'\n______________ACCUAUUU__UGUUCCC\n______________|||:||:|__|:|||||\n______________UGGGUAGA__AUAAGGG\n3'-AUU...UAGCA________GA_______GUAAA...CAA-5'\n_____________|_________________|\n_____________57________________29\n |
67 -- 73 |
40 -- 46 |
-17.5976 kcal/mol |
2.41953 kcal/mol |
7.22212 kcal/mol |
57 85@LB@ | |@LB@5'-AUG...CGGGA G GUCCU...AUA-3'@LB@ ACCUAUUU UGUUCCC@LB@ |||:||:| |:|||||@LB@ UGGGUAGA AUAAGGG@LB@3'-AUU...UAGCA GA GUAAA...CAA-5'@LB@ | |@LB@ 57 29@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -17.5976 kcal/mol@LB@Unfolding Energy - mRNA 2.41953 kcal/mol@LB@Unfolding Energy - sRNA 7.22212 kcal/mol@LB@@LB@Position - mRNA 58 -- 84@LB@Position - sRNA 30 -- 56@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 179 |
0.008166 |
0.1751 |
bsu40550 |
ppaC |
-16.23 |
0.018315 |
37 -- 106 |
8 -- 74 |
manganese-dependent inorganic pyrophosphatase |
|
_____________36_______________________________________________________________________107\n_____________|________________________________________________________________________|\n5'-GAC...AUUAC__________C____________GUA_____CACA__U_____CCUUAGCUCAAA__________CUUA___ACAUC...AUG-3'\n______________AUUUU_GCAA_UAAUC_UACCCA___UUUUA____CC_UUUCU____________GAAAAUGCUU____UUC\n______________||:||_||||_:||||_||||||___|:|||____||_|||||____________|||||:||||____|||\n______________UAGAA_CGUU_GUUAG_AUGGGU___AGAAU____GG_AAAGA____________CUUUUGCGAA____AAG\n3'-AUU...AACGU_____C____U_____C______AG______AAGG__U_____AACUUUAAA_____________UUA____AAAACAA-5'\n_____________|________________________________________________________________________|\n_____________75_______________________________________________________________________7\n |
93 -- 99 |
14 -- 20 |
-36.8068 kcal/mol |
5.4197 kcal/mol |
15.7808 kcal/mol |
36 107@LB@ | |@LB@5'-GAC...AUUAC C GUA CACA U CCUUAGCUCAAA CUUA ACAUC...AUG-3'@LB@ AUUUU GCAA UAAUC UACCCA UUUUA CC UUUCU GAAAAUGCUU UUC@LB@ ||:|| |||| :|||| |||||| |:||| || ||||| |||||:|||| |||@LB@ UAGAA CGUU GUUAG AUGGGU AGAAU GG AAAGA CUUUUGCGAA AAG@LB@3'-AUU...AACGU C U C AG AAGG U AACUUUAAA UUA AAAACAA-5'@LB@ | |@LB@ 75 7@LB@@LB@@LB@Energy -16.23 kcal/mol@LB@Hybridization Energy -36.8068 kcal/mol@LB@Unfolding Energy - mRNA 5.4197 kcal/mol@LB@Unfolding Energy - sRNA 15.7808 kcal/mol@LB@@LB@Position - mRNA 37 -- 106@LB@Position - sRNA 8 -- 74@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 95 |
0.003784 |
0.1541 |
bsu12910 |
proG |
-16.76 |
0.014152 |
1 -- 50 |
33 -- 83 |
pyrroline-5-carboxylate reductase 3 |
|
______________1______________________________________________________51\n______________|______________________________________________________|\n___________5'-________U_________UC_____A_U________A_______A_U________CUAUU...UUG-3'\n______________UUCGUU_C_GUUUU__CA__ACGAU_G_UAUCCAUC___UGUUC_C_CCGUUUCU\n______________||||||_|_:|:||__||__||:||_|_||:|||||___|:|||_|_||:|||||\n______________AAGCAA_G_UAGAA__GU__UGUUA_C_AUGGGUAG___AUAAG_G_GGUAAAGA\n3'-AUU...UACCG______C_U_____CC__U______G__________AGA________________AACUU...CAA-5'\n_____________|_______________________________________________________|\n_____________84______________________________________________________32\n |
44 -- 50 |
33 -- 39 |
-32.4348 kcal/mol |
4.82786 kcal/mol |
13.9589 kcal/mol |
1 51@LB@ | |@LB@ 5'- U UC A U A A U CUAUU...UUG-3'@LB@ UUCGUU C GUUUU CA ACGAU G UAUCCAUC UGUUC C CCGUUUCU@LB@ |||||| | :|:|| || ||:|| | ||:||||| |:||| | ||:|||||@LB@ AAGCAA G UAGAA GU UGUUA C AUGGGUAG AUAAG G GGUAAAGA@LB@3'-AUU...UACCG C U CC U G AGA AACUU...CAA-5'@LB@ | |@LB@ 84 32@LB@@LB@@LB@Energy -16.76 kcal/mol@LB@Hybridization Energy -32.4348 kcal/mol@LB@Unfolding Energy - mRNA 4.82786 kcal/mol@LB@Unfolding Energy - sRNA 13.9589 kcal/mol@LB@@LB@Position - mRNA 1 -- 50@LB@Position - sRNA 33 -- 83@LB@Position Seed - mRNA 44 -- 50@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 47 |
0.001488 |
0.1206 |
bsu18480 |
proH |
-12.75 |
0.095888 |
85 -- 112 |
155 -- 184 |
pyrroline-5-carboxylate reductase 1 |
bsu23800 |
_____________84_______________113\n_____________|________________|\n5'-AGC...UUUUC____________U___UAUUU...CAG-3'\n______________UGCUUUUCAUUA_ACA\n______________|:||:|||||:|_|||\n______________AUGAGAAGUAGU_UGU\n3'-AUU...AAAAA________________CCUGU...CAA-5'\n_____________|________________|\n_____________185______________154\n |
102 -- 108 |
158 -- 164 |
-13.4777 kcal/mol |
3.19807 kcal/mol |
1.41616 kcal/mol |
84 113@LB@ | |@LB@5'-AGC...UUUUC U UAUUU...CAG-3'@LB@ UGCUUUUCAUUA ACA@LB@ |:||:|||||:| |||@LB@ AUGAGAAGUAGU UGU@LB@3'-AUU...AAAAA CCUGU...CAA-5'@LB@ | |@LB@ 185 154@LB@@LB@@LB@Energy -12.75 kcal/mol@LB@Hybridization Energy -13.4777 kcal/mol@LB@Unfolding Energy - mRNA 3.19807 kcal/mol@LB@Unfolding Energy - sRNA 1.41616 kcal/mol@LB@@LB@Position - mRNA 85 -- 112@LB@Position - sRNA 155 -- 184@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 158 -- 164@LB@ |
| 200 |
0.009037 |
0.1751 |
bsu15760 |
prpC |
-17.37 |
0.010506 |
124 -- 148 |
133 -- 158 |
protein phosphatase PrpC |
|
_____________123_________________________149\n_____________|___________________________|\n5'-ACG...AAGAG___A_______________A_______CUGCG...UUG-3'\n______________AGC_AGGACA_UGACAUUG__CGCAGC\n______________|:|_||||||_||||||||__||||||\n______________UUG_UCCUGU_ACUGUAAC__GCGUCG\n3'-AUU...AGUAG__________A________AG______UUCAA...CAA-5'\n_____________|___________________________|\n_____________159_________________________132\n |
135 -- 141 |
141 -- 147 |
-32.4946 kcal/mol |
7.19227 kcal/mol |
8.48433 kcal/mol |
123 149@LB@ | |@LB@5'-ACG...AAGAG A A CUGCG...UUG-3'@LB@ AGC AGGACA UGACAUUG CGCAGC@LB@ |:| |||||| |||||||| ||||||@LB@ UUG UCCUGU ACUGUAAC GCGUCG@LB@3'-AUU...AGUAG A AG UUCAA...CAA-5'@LB@ | |@LB@ 159 132@LB@@LB@@LB@Energy -17.37 kcal/mol@LB@Hybridization Energy -32.4946 kcal/mol@LB@Unfolding Energy - mRNA 7.19227 kcal/mol@LB@Unfolding Energy - sRNA 8.48433 kcal/mol@LB@@LB@Position - mRNA 124 -- 148@LB@Position - sRNA 133 -- 158@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 141 -- 147@LB@ |
| 196 |
0.008988 |
0.1751 |
bsu24970 |
pstA |
-9.97 |
0.317060 |
128 -- 176 |
38 -- 86 |
ABC transporter permease |
|
_____________127___________________________________________________177\n_____________|_____________________________________________________|\n5'-AUU...AAUGG___________U__________UGU__U__U________CUG_______G___CUUGU...UUA-3'\n______________GGCUU_G_UGC__UC_UGGUGA___CA_UC_UGUUCAUC___CUUAUUC_CUA\n______________|||||_|_|||__||_|||::|___||_||_|:::||||___|||||||_|:|\n______________CCGAA_C_ACG__AG_ACCGUU___GU_AG_AUGGGUAG___GAAUAAG_GGU\n3'-AUU...ACUUA_____G_A___UU__A______U____U__C________A_________G___AAAGA...CAA-5'\n_____________|_____________________________________________________|\n_____________87____________________________________________________37\n |
166 -- 172 |
42 -- 48 |
-33.9261 kcal/mol |
12.9253 kcal/mol |
13.9524 kcal/mol |
127 177@LB@ | |@LB@5'-AUU...AAUGG U UGU U U CUG G CUUGU...UUA-3'@LB@ GGCUU G UGC UC UGGUGA CA UC UGUUCAUC CUUAUUC CUA@LB@ ||||| | ||| || |||::| || || |:::|||| ||||||| |:|@LB@ CCGAA C ACG AG ACCGUU GU AG AUGGGUAG GAAUAAG GGU@LB@3'-AUU...ACUUA G A UU A U U C A G AAAGA...CAA-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -9.97 kcal/mol@LB@Hybridization Energy -33.9261 kcal/mol@LB@Unfolding Energy - mRNA 12.9253 kcal/mol@LB@Unfolding Energy - sRNA 13.9524 kcal/mol@LB@@LB@Position - mRNA 128 -- 176@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 42 -- 48@LB@ |
