| 91 |
0.00349 |
0.1486 |
bsu28050 |
maf |
-6.37 |
0.874324 |
134 -- 184 |
39 -- 85 |
septum formation protein Maf |
|
_____________133_____185\n_____________|_______|\n5'-GAA...CCCUA_______AUUGU...AAG-3'\n______________CUCCAUU\n______________|:|||||\n______________GGGGUAA\n3'-AUU...AAUAA_______AGAAA...CAA-5'\n_____________|_______|\n_____________86______38\n |
275 -- 281 |
36 -- 42 |
-8.4297 kcal/mol |
0.414575 kcal/mol |
2.55634 kcal/mol |
133 185@LB@ | |@LB@5'-GAA...CCCUA AUUGU...AAG-3'@LB@ CUCCAUU@LB@ |:|||||@LB@ GGGGUAA@LB@3'-AUU...AAUAA AGAAA...CAA-5'@LB@ | |@LB@ 86 38@LB@@LB@@LB@Energy -6.37 kcal/mol@LB@Hybridization Energy -8.4297 kcal/mol@LB@Unfolding Energy - mRNA 0.414575 kcal/mol@LB@Unfolding Energy - sRNA 2.55634 kcal/mol@LB@@LB@Position - mRNA 134 -- 184@LB@Position - sRNA 39 -- 85@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 88 |
0.003231 |
0.1423 |
bsu34620 |
mdxD |
-9.76 |
0.344052 |
128 -- 173 |
81 -- 130 |
glucan 1 4-alpha-maltohexaosidase |
|
_____________127____________174\n_____________|______________|\n5'-GUU...AUGCA__GA_______C__GCCAU...GUG-3'\n______________GC__UUCAUCA_CA\n______________:|__|||||||_||\n______________UG__AAGUAGU_GU\n3'-AUU...AAAAA__AG_______U__CCUGU...CAA-5'\n_____________|______________|\n_____________131____________80\n |
220 -- 226 |
158 -- 164 |
-10.4913 kcal/mol |
1.73429 kcal/mol |
1.41528 kcal/mol |
127 174@LB@ | |@LB@5'-GUU...AUGCA GA C GCCAU...GUG-3'@LB@ GC UUCAUCA CA@LB@ :| ||||||| ||@LB@ UG AAGUAGU GU@LB@3'-AUU...AAAAA AG U CCUGU...CAA-5'@LB@ | |@LB@ 131 80@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -10.4913 kcal/mol@LB@Unfolding Energy - mRNA 1.73429 kcal/mol@LB@Unfolding Energy - sRNA 1.41528 kcal/mol@LB@@LB@Position - mRNA 128 -- 173@LB@Position - sRNA 81 -- 130@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 158 -- 164@LB@ |
| 9 |
0.0002071 |
0.08823 |
bsu08425 |
mprF |
-16.98 |
0.012672 |
3 -- 50 |
34 -- 81 |
phosphatidylglycerol lysyltransferase |
|
_____________2_______________________________________________51\n_____________|_______________________________________________|\n_________5'-AC__________GU_______U__AU__________AUCAC________CAUUC...AUC-3'\n______________UGUUGU_AUC___GUAAAU_AU____UCCAUUUC_____UUCCUCAU\n______________:||||:_|||___|:|||:_||____:||||:||_____||||:|||\n______________GCAACG_UAG___CGUUUG_UA____GGGUAGAG_____AAGGGGUA\n3'-AUU...CCGAA______U___AAC______U__GCAU________AAU__________AAGAA...CAA-5'\n_____________|_______________________________________________|\n_____________82______________________________________________33\n |
39 -- 45 |
37 -- 43 |
-29.0114 kcal/mol |
1.80779 kcal/mol |
13.626 kcal/mol |
2 51@LB@ | |@LB@ 5'-AC GU U AU AUCAC CAUUC...AUC-3'@LB@ UGUUGU AUC GUAAAU AU UCCAUUUC UUCCUCAU@LB@ :||||: ||| |:|||: || :||||:|| ||||:|||@LB@ GCAACG UAG CGUUUG UA GGGUAGAG AAGGGGUA@LB@3'-AUU...CCGAA U AAC U GCAU AAU AAGAA...CAA-5'@LB@ | |@LB@ 82 33@LB@@LB@@LB@Energy -16.98 kcal/mol@LB@Hybridization Energy -29.0114 kcal/mol@LB@Unfolding Energy - mRNA 1.80779 kcal/mol@LB@Unfolding Energy - sRNA 13.626 kcal/mol@LB@@LB@Position - mRNA 3 -- 50@LB@Position - sRNA 34 -- 81@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 46 |
0.001434 |
0.1206 |
bsu07700 |
nagP |
-14.91 |
0.034715 |
11 -- 49 |
31 -- 62 |
PTS system-N-acetylglucosamine-specific transporter subunit EIICB |
|
_____________10______________________________________50\n_____________|_______________________________________|\n5'-UCU...UUCUU______UUGUUACAA______G_C______GC_______UUAAA...UAU-3'\n______________GAUCGU_________UCAUCU_U_AUUCCC__UUUCUUU\n______________:|||||_________:|||||_|_||||||__|||||||\n______________UUAGCA_________GGUAGA_A_UAAGGG__AAAGAAA\n3'-AUU...GUUUG______UG_____________G_A______GU_______CUUUA...CAA-5'\n_____________|_______________________________________|\n_____________63______________________________________30\n |
43 -- 49 |
31 -- 37 |
-26.4462 kcal/mol |
2.72756 kcal/mol |
10.7322 kcal/mol |
10 50@LB@ | |@LB@5'-UCU...UUCUU UUGUUACAA G C GC UUAAA...UAU-3'@LB@ GAUCGU UCAUCU U AUUCCC UUUCUUU@LB@ :||||| :||||| | |||||| |||||||@LB@ UUAGCA GGUAGA A UAAGGG AAAGAAA@LB@3'-AUU...GUUUG UG G A GU CUUUA...CAA-5'@LB@ | |@LB@ 63 30@LB@@LB@@LB@Energy -14.91 kcal/mol@LB@Hybridization Energy -26.4462 kcal/mol@LB@Unfolding Energy - mRNA 2.72756 kcal/mol@LB@Unfolding Energy - sRNA 10.7322 kcal/mol@LB@@LB@Position - mRNA 11 -- 49@LB@Position - sRNA 31 -- 62@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 177 |
0.008148 |
0.1751 |
bsu37320 |
narK |
-12.38 |
0.113512 |
147 -- 292 |
34 -- 178 |
nitrite extrusion protein |
|
_____________146________________________________________________________________________________________________________________________________________________________293\n_____________|__________________________________________________________________________________________________________________________________________________________|\n5'-CAA...UUGGC__G_______AU____A___UGAUU_____AU_____AAA_G___________A_____CAACC__CAA___A___AA_____G___C___CAUUAA______G__G___________UU______UGG_____G_________CA________CCAAAUCA-3'\n______________UA_UUUUUGU__GAUA_GAC_____AUUGA__CAUUG___G_GGCAAG__CCA_AUGAU_____GU___CAC_UUC__UUAUC_UUA_AGU________GCUU_GU_GCAG____GGU__AUGGUU___GUGCU_AUUUC__AU__CUCAUUUC\n______________||_|:||::|__:|:|_|||_____|||||__|||||___|_:|||||__|||_||:||_____||___|||_|||__|:|||_|:|_|||________||||_||_|||:____||:__|:::|:___||:|:_||:||__||__|:||||||\n______________AU_AGAAGUA__UUGU_CUG_____UAACU__GUAAC___C_UCGUUC__GGU_UAUUA_____CA___GUG_AAG__AGUAG_AGU_UCA________CGAA_CA_CGUU____CCG__UGUUAG___CAUGG_UAGAG__UA__GGGUAAAG\n3'-AUU...AAAAA__G_______G_____C____________________AGG_G______AA___A____________ACA___A__________A___U___UUACUUAC____G__A____AGAA___UU______________G_____AA__AG________AAACU...CAA-5'\n_____________|__________________________________________________________________________________________________________________________________________________________|\n_____________179________________________________________________________________________________________________________________________________________________________33\n |
286 -- 292 |
34 -- 40 |
-71.0788 kcal/mol |
32.1142 kcal/mol |
31.2836 kcal/mol |
146 293@LB@ | |@LB@5'-CAA...UUGGC G AU A UGAUU AU AAA G A CAACC CAA A AA G C CAUUAA G G UU UGG G CA CCAAAUCA-3'@LB@ UA UUUUUGU GAUA GAC AUUGA CAUUG G GGCAAG CCA AUGAU GU CAC UUC UUAUC UUA AGU GCUU GU GCAG GGU AUGGUU GUGCU AUUUC AU CUCAUUUC@LB@ || |:||::| :|:| ||| ||||| ||||| | :||||| ||| ||:|| || ||| ||| |:||| |:| ||| |||| || |||: ||: |:::|: ||:|: ||:|| || |:||||||@LB@ AU AGAAGUA UUGU CUG UAACU GUAAC C UCGUUC GGU UAUUA CA GUG AAG AGUAG AGU UCA CGAA CA CGUU CCG UGUUAG CAUGG UAGAG UA GGGUAAAG@LB@3'-AUU...AAAAA G G C AGG G AA A ACA A A U UUACUUAC G A AGAA UU G AA AG AAACU...CAA-5'@LB@ | |@LB@ 179 33@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -71.0788 kcal/mol@LB@Unfolding Energy - mRNA 32.1142 kcal/mol@LB@Unfolding Energy - sRNA 31.2836 kcal/mol@LB@@LB@Position - mRNA 147 -- 292@LB@Position - sRNA 34 -- 178@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 186 |
0.00854 |
0.1751 |
bsu03320 |
nasB |
-11.11 |
0.199178 |
25 -- 36 |
33 -- 45 |
assimilatory nitrate reductase electron transfer subunit |
bsu03300 |
_____________24____________37\n_____________|_____________|\n5'-UUU...AUAAG_____________AGACC...UCA-3'\n______________AUUCCCC_UUUCU\n______________|||||||_|||||\n______________UAAGGGG_AAAGA\n3'-AUU...GAGAA_______U_____AACUU...CAA-5'\n_____________|_____________|\n_____________46____________32\n |
25 -- 31 |
39 -- 45 |
-15.5675 kcal/mol |
1.76448 kcal/mol |
4.94568 kcal/mol |
24 37@LB@ | |@LB@5'-UUU...AUAAG AGACC...UCA-3'@LB@ AUUCCCC UUUCU@LB@ ||||||| |||||@LB@ UAAGGGG AAAGA@LB@3'-AUU...GAGAA U AACUU...CAA-5'@LB@ | |@LB@ 46 32@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -15.5675 kcal/mol@LB@Unfolding Energy - mRNA 1.76448 kcal/mol@LB@Unfolding Energy - sRNA 4.94568 kcal/mol@LB@@LB@Position - mRNA 25 -- 36@LB@Position - sRNA 33 -- 45@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 103 |
0.004238 |
0.1594 |
bsu09690 |
nhaX |
-18.33 |
0.006526 |
38 -- 80 |
34 -- 77 |
stress response protein NhaX |
|
_____________37________________________________________________81\n_____________|_________________________________________________|\n5'-GGU...AACAC____AUUC_______U____________________CCA____G_____AUCUU...CCG-3'\n______________GCAA____CUUGGCA_AGCAA____ACCC_UC_CUU___UUCU_AUUUC\n______________||||____|||||||_|:|||____||||_||_|||___|:|:_|||||\n______________CGUU____GAACCGU_UUGUU____UGGG_AG_GAA___AGGG_UAAAG\n3'-AUU...AGCAA____A________________AGCA____U__A___UA_____G_____AAACU...CAA-5'\n_____________|_________________________________________________|\n_____________78________________________________________________33\n |
46 -- 52 |
66 -- 72 |
-32.0538 kcal/mol |
3.14542 kcal/mol |
13.7939 kcal/mol |
37 81@LB@ | |@LB@5'-GGU...AACAC AUUC U CCA G AUCUU...CCG-3'@LB@ GCAA CUUGGCA AGCAA ACCC UC CUU UUCU AUUUC@LB@ |||| ||||||| |:||| |||| || ||| |:|: |||||@LB@ CGUU GAACCGU UUGUU UGGG AG GAA AGGG UAAAG@LB@3'-AUU...AGCAA A AGCA U A UA G AAACU...CAA-5'@LB@ | |@LB@ 78 33@LB@@LB@@LB@Energy -18.33 kcal/mol@LB@Hybridization Energy -32.0538 kcal/mol@LB@Unfolding Energy - mRNA 3.14542 kcal/mol@LB@Unfolding Energy - sRNA 13.7939 kcal/mol@LB@@LB@Position - mRNA 38 -- 80@LB@Position - sRNA 34 -- 77@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 23 |
0.0006135 |
0.1011 |
bsu23610 |
nudF |
-13.21 |
0.077687 |
6 -- 79 |
37 -- 88 |
adp-ribose pyrophosphatase |
|
_____________5__________________________________________________________________________80\n_____________|__________________________________________________________________________|\n______5'-CUUUU_________AGAUC_______UCA__UAUUG__A_____GU____A_____UUAACUUCGCUCGA_________GCUUU...AAG-3'\n______________AUGGCUUUG_____CAAUCUU___CA_____AA_UGUGC__CCAU_CUCUU______________AUUUCCCAU\n______________|||||||:|_____|||||||___||_____||_:||:|__||||_|||||______________|||:|||||\n______________UACCGAAGC_____GUUAGAA___GU_____UU_GCAUG__GGUA_GAGAA______________UAAGGGGUA\n3'-AUU...UUACU_________AAC_________CC___UUG____A________________________________________AAGAA...CAA-5'\n_____________|__________________________________________________________________________|\n_____________89_________________________________________________________________________36\n |
73 -- 79 |
37 -- 43 |
-36.6547 kcal/mol |
11.779 kcal/mol |
14.1528 kcal/mol |
5 80@LB@ | |@LB@ 5'-CUUUU AGAUC UCA UAUUG A GU A UUAACUUCGCUCGA GCUUU...AAG-3'@LB@ AUGGCUUUG CAAUCUU CA AA UGUGC CCAU CUCUU AUUUCCCAU@LB@ |||||||:| ||||||| || || :||:| |||| ||||| |||:|||||@LB@ UACCGAAGC GUUAGAA GU UU GCAUG GGUA GAGAA UAAGGGGUA@LB@3'-AUU...UUACU AAC CC UUG A AAGAA...CAA-5'@LB@ | |@LB@ 89 36@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -36.6547 kcal/mol@LB@Unfolding Energy - mRNA 11.779 kcal/mol@LB@Unfolding Energy - sRNA 14.1528 kcal/mol@LB@@LB@Position - mRNA 6 -- 79@LB@Position - sRNA 37 -- 88@LB@Position Seed - mRNA 73 -- 79@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 193 |
0.008782 |
0.1751 |
bsu13160 |
ohrB |
-9.78 |
0.341127 |
32 -- 61 |
100 -- 129 |
organic hydroperoxide resistance protein OhrB |
|
_____________31_________62\n_____________|__________|\n5'-CAU...GGACG__________AUUAC...AUG-3'\n______________AGCAGGACAU\n______________|:||||||||\n______________UUGUCCUGUA\n3'-AUU...AGUAG__________ACUGU...CAA-5'\n_____________|__________|\n_____________130________99\n |
245 -- 251 |
149 -- 155 |
-15.2334 kcal/mol |
1.87143 kcal/mol |
5.55277 kcal/mol |
31 62@LB@ | |@LB@5'-CAU...GGACG AUUAC...AUG-3'@LB@ AGCAGGACAU@LB@ |:||||||||@LB@ UUGUCCUGUA@LB@3'-AUU...AGUAG ACUGU...CAA-5'@LB@ | |@LB@ 130 99@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -15.2334 kcal/mol@LB@Unfolding Energy - mRNA 1.87143 kcal/mol@LB@Unfolding Energy - sRNA 5.55277 kcal/mol@LB@@LB@Position - mRNA 32 -- 61@LB@Position - sRNA 100 -- 129@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 149 -- 155@LB@ |
| 87 |
0.003215 |
0.1423 |
bsu04140 |
pbpC |
-8.12 |
0.599206 |
128 -- 139 |
96 -- 107 |
penicillin-binding protein 3 |
|
______________128_____140\n______________|_______|\n___________5'-________AAGGC...CAU-3'\n______________UCUUGUUC\n______________||||:|||\n______________AGAAUAAG\n3'-AUU...GGUAG________GGGUA...CAA-5'\n_____________|________|\n_____________108______95\n |
2 -- 8 |
42 -- 48 |
-8.08477 kcal/mol |
0.903572 kcal/mol |
0.0615861 kcal/mol |
128 140@LB@ | |@LB@ 5'- AAGGC...CAU-3'@LB@ UCUUGUUC@LB@ ||||:|||@LB@ AGAAUAAG@LB@3'-AUU...GGUAG GGGUA...CAA-5'@LB@ | |@LB@ 108 95@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -8.08477 kcal/mol@LB@Unfolding Energy - mRNA 0.903572 kcal/mol@LB@Unfolding Energy - sRNA 0.0615861 kcal/mol@LB@@LB@Position - mRNA 128 -- 139@LB@Position - sRNA 96 -- 107@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 42 -- 48@LB@ |
