| 33 |
0.0009705 |
0.114 |
bsu20780 |
yopS |
-12.53 |
0.106187 |
15 -- 36 |
34 -- 54 |
XRE family transcriptional regulator |
|
_____________14_______________37\n_____________|________________|\n5'-GUU...ACCUG________C_______UAUGU...AAC-3'\n______________CCAUC_CU_AUUCUCC\n______________|||||_||_||||:||\n______________GGUAG_GA_UAAGGGG\n3'-AUU...GCAUG_____A__A_______UAAAG...CAA-5'\n_____________|________________|\n_____________55_______________33\n |
23 -- 29 |
39 -- 45 |
-17.4753 kcal/mol |
0.463886 kcal/mol |
7.9005 kcal/mol |
14 37@LB@ | |@LB@5'-GUU...ACCUG C UAUGU...AAC-3'@LB@ CCAUC CU AUUCUCC@LB@ ||||| || ||||:||@LB@ GGUAG GA UAAGGGG@LB@3'-AUU...GCAUG A A UAAAG...CAA-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -17.4753 kcal/mol@LB@Unfolding Energy - mRNA 0.463886 kcal/mol@LB@Unfolding Energy - sRNA 7.9005 kcal/mol@LB@@LB@Position - mRNA 15 -- 36@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 130 |
0.005995 |
0.1741 |
bsu19660 |
yozD |
-10.24 |
0.285413 |
18 -- 51 |
105 -- 135 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________17_________________________________52\n_____________|__________________________________|\n5'-CAC...CUUUG____UUUU_____U______AUCAAAU_______CGUCC...UGU-3'\n______________AGCG____UUCCA_UAUGAU_______CUUUCUC\n______________|||:____|||||_|||:||_______|||||||\n______________UCGU____AAGGU_AUAUUA_______GAAAGAG\n3'-AUU...AGGCG____UC______________CAACAGU_______UAGAA...CAA-5'\n_____________|__________________________________|\n_____________136________________________________104\n |
45 -- 51 |
105 -- 111 |
-19.2876 kcal/mol |
2.67508 kcal/mol |
6.61557 kcal/mol |
17 52@LB@ | |@LB@5'-CAC...CUUUG UUUU U AUCAAAU CGUCC...UGU-3'@LB@ AGCG UUCCA UAUGAU CUUUCUC@LB@ |||: ||||| |||:|| |||||||@LB@ UCGU AAGGU AUAUUA GAAAGAG@LB@3'-AUU...AGGCG UC CAACAGU UAGAA...CAA-5'@LB@ | |@LB@ 136 104@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -19.2876 kcal/mol@LB@Unfolding Energy - mRNA 2.67508 kcal/mol@LB@Unfolding Energy - sRNA 6.61557 kcal/mol@LB@@LB@Position - mRNA 18 -- 51@LB@Position - sRNA 105 -- 135@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 105 -- 111@LB@ |
| 118 |
0.005364 |
0.1741 |
bsu21980 |
ypdP |
-14.81 |
0.036422 |
190 -- 236 |
72 -- 112 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________189_______________________________________________237\n_____________|_________________________________________________|\n5'-AAC...AGGAA_____________GUUUAAUAAUUC__UU___________U________AUUCA...GGA-3'\n______________GCUUUUUCAUCUU____________GU__UGGAU__CUUU_UUGCGAUC\n______________:||||:|||||||____________||__||:||__|||:_||||:|||\n______________UGAAAGAGUAGAA____________CA__ACUUA__GAAG_AACGUUAG\n3'-AUU...AACAG_____________GUUU__________UU_____CC____C________AACCG...CAA-5'\n_____________|_________________________________________________|\n_____________113_______________________________________________71\n |
230 -- 236 |
72 -- 78 |
-29.9578 kcal/mol |
5.88063 kcal/mol |
12.3236 kcal/mol |
189 237@LB@ | |@LB@5'-AAC...AGGAA GUUUAAUAAUUC UU U AUUCA...GGA-3'@LB@ GCUUUUUCAUCUU GU UGGAU CUUU UUGCGAUC@LB@ :||||:||||||| || ||:|| |||: ||||:|||@LB@ UGAAAGAGUAGAA CA ACUUA GAAG AACGUUAG@LB@3'-AUU...AACAG GUUU UU CC C AACCG...CAA-5'@LB@ | |@LB@ 113 71@LB@@LB@@LB@Energy -14.81 kcal/mol@LB@Hybridization Energy -29.9578 kcal/mol@LB@Unfolding Energy - mRNA 5.88063 kcal/mol@LB@Unfolding Energy - sRNA 12.3236 kcal/mol@LB@@LB@Position - mRNA 190 -- 236@LB@Position - sRNA 72 -- 112@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 8 |
0.0001871 |
0.08823 |
bsu22860 |
yphA |
-19.72 |
0.003251 |
3 -- 123 |
37 -- 178 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________2_______________________________________________________________________________________________________124\n_____________|_______________________________________________________________________________________________________|\n5'-UCG...AAGGC________CCG______________________AC_G__C_______GAUUC______________AAGCUUUGAGUUUUU________CUGUCUU_______GAUCA...UUA-3'\n______________UUGUCGCU___UCA_________UAGUGAAUGG__U_GU_GCGAUCU_____GAC__UC_UGCCUG_______________UCUCUUGU_______UUCCCAU\n______________|||||:||___|||_________||:|||||||__|_||_||:||||_____:||__||_|:||::_______________||||||:|_______|:|||||\n______________AACAGUGA___AGU_________AUUACUUACC__A_CA_CGUUAGA_____UUG__AG_AUGGGU_______________AGAGAAUA_______AGGGGUA\n3'-AUU...AUUAC________AAG___AGAAGUUUC__________GA_G__A_______ACCGU___UU__C___________________________________________AAGAA...CAA-5'\n_____________|_______________________________________________________________________________________________________|\n_____________179_____________________________________________________________________________________________________36\n |
117 -- 123 |
37 -- 43 |
-53.1639 kcal/mol |
19.1133 kcal/mol |
22.4377 kcal/mol |
2 124@LB@ | |@LB@5'-UCG...AAGGC CCG AC G C GAUUC AAGCUUUGAGUUUUU CUGUCUU GAUCA...UUA-3'@LB@ UUGUCGCU UCA UAGUGAAUGG U GU GCGAUCU GAC UC UGCCUG UCUCUUGU UUCCCAU@LB@ |||||:|| ||| ||:||||||| | || ||:|||| :|| || |:||:: ||||||:| |:|||||@LB@ AACAGUGA AGU AUUACUUACC A CA CGUUAGA UUG AG AUGGGU AGAGAAUA AGGGGUA@LB@3'-AUU...AUUAC AAG AGAAGUUUC GA G A ACCGU UU C AAGAA...CAA-5'@LB@ | |@LB@ 179 36@LB@@LB@@LB@Energy -19.72 kcal/mol@LB@Hybridization Energy -53.1639 kcal/mol@LB@Unfolding Energy - mRNA 19.1133 kcal/mol@LB@Unfolding Energy - sRNA 22.4377 kcal/mol@LB@@LB@Position - mRNA 3 -- 123@LB@Position - sRNA 37 -- 178@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 142 |
0.006636 |
0.1741 |
bsu22510 |
ypjC |
-12.74 |
0.096342 |
122 -- 155 |
156 -- 190 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; PubMedId: 15849754 16850406; Product type pm: membrane component' |
|
_____________121_____________________________________________________________________________156\n_____________|_______________________________________________________________________________|\n5'-UAA...UCAUC_____A___GUUAGCUAAUU___AU___U______AA_____A_____C_____________C____UU__________CACUA...UGG-3'\n______________CUCUU_CAU___________CAG__ACG_UUGACA__UGUUU__AGCA_GUU________UG_UGUU__CUUUUUCAUC\n______________|||||_|||___________|||__||:_||||||__|||::__||||_|||________||_|||:__||||:|||||\n______________GAGAA_GUA___________GUC__UGU_AACUGU__ACAGG__UCGU_CAA________AC_ACAG__GAAAGAGUAG\n3'-AUU...AAAAU_________GUU___________C___________A______CG____U___GGUAUAUU__A____U___________AAGUU...CAA-5'\n_____________|_______________________________________________________________________________|\n_____________191_____________________________________________________________________________155\n |
146 -- 152 |
102 -- 108 |
-35.2093 kcal/mol |
10.3676 kcal/mol |
14.8184 kcal/mol |
121 156@LB@ | |@LB@5'-UAA...UCAUC A GUUAGCUAAUU AU U AA A C C UU CACUA...UGG-3'@LB@ CUCUU CAU CAG ACG UUGACA UGUUU AGCA GUU UG UGUU CUUUUUCAUC@LB@ ||||| ||| ||| ||: |||||| |||:: |||| ||| || |||: ||||:|||||@LB@ GAGAA GUA GUC UGU AACUGU ACAGG UCGU CAA AC ACAG GAAAGAGUAG@LB@3'-AUU...AAAAU GUU C A CG U GGUAUAUU A U AAGUU...CAA-5'@LB@ | |@LB@ 191 155@LB@@LB@@LB@Energy -12.74 kcal/mol@LB@Hybridization Energy -35.2093 kcal/mol@LB@Unfolding Energy - mRNA 10.3676 kcal/mol@LB@Unfolding Energy - sRNA 14.8184 kcal/mol@LB@@LB@Position - mRNA 122 -- 155@LB@Position - sRNA 156 -- 190@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 102 -- 108@LB@ |
| 58 |
0.001848 |
0.1212 |
bsu21840 |
ypjP |
-10.31 |
0.277541 |
15 -- 73 |
14 -- 70 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________14___________________________________________________________74\n_____________|____________________________________________________________|\n5'-UAA...AACUG__________AG___CAA____GCGGAAAG____C____A_______A___U________UUACA...CCG-3'\n______________UGGCAAACAG__CGU___UCAU________CCUC_UUUC__UGAAAU_UUG_AAGCGUUU\n______________|||||||||:__|||___:|||________||:|_||||__||||||_|||_||:||:||\n______________ACCGUUUGUU__GCA___GGUA________GGGG_AAAG__ACUUUA_AAC_UUUGCGAA\n3'-AUU...UUAGA__________A____UG_____GAGAAUAA____U____AA__________U________UUAAA...CAA-5'\n_____________|____________________________________________________________|\n_____________71___________________________________________________________13\n |
67 -- 73 |
14 -- 20 |
-38.3558 kcal/mol |
13.3253 kcal/mol |
15.5628 kcal/mol |
14 74@LB@ | |@LB@5'-UAA...AACUG AG CAA GCGGAAAG C A A U UUACA...CCG-3'@LB@ UGGCAAACAG CGU UCAU CCUC UUUC UGAAAU UUG AAGCGUUU@LB@ |||||||||: ||| :||| ||:| |||| |||||| ||| ||:||:||@LB@ ACCGUUUGUU GCA GGUA GGGG AAAG ACUUUA AAC UUUGCGAA@LB@3'-AUU...UUAGA A UG GAGAAUAA U AA U UUAAA...CAA-5'@LB@ | |@LB@ 71 13@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -38.3558 kcal/mol@LB@Unfolding Energy - mRNA 13.3253 kcal/mol@LB@Unfolding Energy - sRNA 15.5628 kcal/mol@LB@@LB@Position - mRNA 15 -- 73@LB@Position - sRNA 14 -- 70@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 112 |
0.00483 |
0.1671 |
bsu26010 |
yqbQ |
-18.75 |
0.005285 |
180 -- 239 |
82 -- 139 |
Evidence 4: Homologs of previously reported genes of unknown function |
bsu12700 |
_____________179______________________________________________________________240\n_____________|________________________________________________________________|\n5'-CUA...AAAUA_______________G______ACA__AUAGA___________A______AAACG_________GAGCU...UUA-3'\n______________CCGCAGUAAG___CA_GUGAUG___UG_____AC_UUUUCGUC_UUAAAG_____GAAUGGCUU\n______________||||||:|||___||_:|:|||___||_____||_||:||:||_|:||||_____|||||||||\n______________GGCGUCGUUC___GU_UAUUAC___AC_____UG_AAGAGUAG_AGUUUC_____CUUACCGAA\n3'-AUU...UAACA__________AAG__A______A____AG_____A________A______AUUA__________GCAAC...CAA-5'\n_____________|________________________________________________________________|\n_____________140______________________________________________________________81\n |
233 -- 239 |
82 -- 88 |
-46.2512 kcal/mol |
11.9879 kcal/mol |
18.3017 kcal/mol |
179 240@LB@ | |@LB@5'-CUA...AAAUA G ACA AUAGA A AAACG GAGCU...UUA-3'@LB@ CCGCAGUAAG CA GUGAUG UG AC UUUUCGUC UUAAAG GAAUGGCUU@LB@ ||||||:||| || :|:||| || || ||:||:|| |:|||| |||||||||@LB@ GGCGUCGUUC GU UAUUAC AC UG AAGAGUAG AGUUUC CUUACCGAA@LB@3'-AUU...UAACA AAG A A AG A A AUUA GCAAC...CAA-5'@LB@ | |@LB@ 140 81@LB@@LB@@LB@Energy -18.75 kcal/mol@LB@Hybridization Energy -46.2512 kcal/mol@LB@Unfolding Energy - mRNA 11.9879 kcal/mol@LB@Unfolding Energy - sRNA 18.3017 kcal/mol@LB@@LB@Position - mRNA 180 -- 239@LB@Position - sRNA 82 -- 139@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 62 |
0.001958 |
0.1214 |
bsu25150 |
yqfQ |
-10.78 |
0.228520 |
210 -- 221 |
125 -- 139 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________209_____________222\n_____________|_______________|\n5'-AAU...UUUCA_______________AUGAG...UGC-3'\n______________CCGCAGCAG___CCA\n______________||||||||:___|||\n______________GGCGUCGUU___GGU\n3'-AUU...UAACA_________CAA___AUAUU...CAA-5'\n_____________|_______________|\n_____________140_____________124\n |
212 -- 218 |
131 -- 137 |
-17.5181 kcal/mol |
2.74724 kcal/mol |
6.06036 kcal/mol |
209 222@LB@ | |@LB@5'-AAU...UUUCA AUGAG...UGC-3'@LB@ CCGCAGCAG CCA@LB@ ||||||||: |||@LB@ GGCGUCGUU GGU@LB@3'-AUU...UAACA CAA AUAUU...CAA-5'@LB@ | |@LB@ 140 124@LB@@LB@@LB@Energy -10.78 kcal/mol@LB@Hybridization Energy -17.5181 kcal/mol@LB@Unfolding Energy - mRNA 2.74724 kcal/mol@LB@Unfolding Energy - sRNA 6.06036 kcal/mol@LB@@LB@Position - mRNA 210 -- 221@LB@Position - sRNA 125 -- 139@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 3 |
8.73e-05 |
0.08823 |
bsu25090 |
yqfW |
-16.63 |
0.015052 |
29 -- 79 |
33 -- 81 |
nucleotidase YqfW |
|
_____________28____________________________________________________80\n_____________|_____________________________________________________|\n5'-CCU...GUAAC______U___AC___UUUUCG_______UUG___C___CA_______C_____GUUUU...ACG-3'\n______________UGUUGU_AUC___GC______UAAUCGU___CCA_CUU__AUUCCCC__UUCU\n______________:||||:_|||___||______:||||||___|||_||:__|||||||__||||\n______________GCAACG_UAG___CG______GUUAGCA___GGU_GAG__UAAGGGG__AAGA\n3'-AUU...CCGAA______U___AAC__UUU__________UG____A___AA_______UA____AACUU...CAA-5'\n_____________|_____________________________________________________|\n_____________82____________________________________________________32\n |
68 -- 74 |
39 -- 45 |
-32.9438 kcal/mol |
5.67451 kcal/mol |
13.9362 kcal/mol |
28 80@LB@ | |@LB@5'-CCU...GUAAC U AC UUUUCG UUG C CA C GUUUU...ACG-3'@LB@ UGUUGU AUC GC UAAUCGU CCA CUU AUUCCCC UUCU@LB@ :||||: ||| || :|||||| ||| ||: ||||||| ||||@LB@ GCAACG UAG CG GUUAGCA GGU GAG UAAGGGG AAGA@LB@3'-AUU...CCGAA U AAC UUU UG A AA UA AACUU...CAA-5'@LB@ | |@LB@ 82 32@LB@@LB@@LB@Energy -16.63 kcal/mol@LB@Hybridization Energy -32.9438 kcal/mol@LB@Unfolding Energy - mRNA 5.67451 kcal/mol@LB@Unfolding Energy - sRNA 13.9362 kcal/mol@LB@@LB@Position - mRNA 29 -- 79@LB@Position - sRNA 33 -- 81@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 144 |
0.006712 |
0.1741 |
bsu25040 |
yqgB |
-19.28 |
0.004052 |
60 -- 160 |
55 -- 168 |
Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; PubMedId: 15294815; Product type ph: phenotype |
|
_____________59_____________________________________________________161\n_____________|______________________________________________________|\n5'-UAA...AAAAC__C_______AACA__CAAU______A_______AG___CCAUCC_________ACUCU...UUU-3'\n______________CG_UGCAAUC____GC____ACAA_C_UAUCCAU__CUU______UCCCAUUUU\n______________||_|||||||____||____||||_|_||:||||__|||______:|||||||:\n______________GC_ACGUUAG____CG____UGUU_G_AUGGGUA__GAA______GGGGUAAAG\n3'-AUU...CCGAA__A_______AAC___UU______A_C_______GA___UAA____________AAACU...CAA-5'\n_____________|______________________________________________________|\n_____________169____________________________________________________54\n |
105 -- 111 |
34 -- 40 |
-33.5165 kcal/mol |
5.00067 kcal/mol |
13.93 kcal/mol |
59 161@LB@ | |@LB@5'-UAA...AAAAC C AACA CAAU A AG CCAUCC ACUCU...UUU-3'@LB@ CG UGCAAUC GC ACAA C UAUCCAU CUU UCCCAUUUU@LB@ || ||||||| || |||| | ||:|||| ||| :|||||||:@LB@ GC ACGUUAG CG UGUU G AUGGGUA GAA GGGGUAAAG@LB@3'-AUU...CCGAA A AAC UU A C GA UAA AAACU...CAA-5'@LB@ | |@LB@ 169 54@LB@@LB@@LB@Energy -19.28 kcal/mol@LB@Hybridization Energy -33.5165 kcal/mol@LB@Unfolding Energy - mRNA 5.00067 kcal/mol@LB@Unfolding Energy - sRNA 13.93 kcal/mol@LB@@LB@Position - mRNA 60 -- 160@LB@Position - sRNA 55 -- 168@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 34 -- 40@LB@ |
